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HG10010469 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10010469
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationChr06:22509711..22510311
RNA-Seq ExpressionHG10010469
SyntenyHG10010469
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033214.1 uncharacterized protein E6C27_scaffold845G00030 [Cucumis melo var. makuwa]1.7e-5267.1Show/hide
Query:  MLMFRLENLDPFLDAILALHRFGKNGTIECSPSMFSIIVPHHYIELNVAFQMMPQFFNHFFSNNTHSSKIFLQPFYITLKHMHESQFSRMSLYLLKHLDR
        ML+F LEN D FLDA+  L RF +N  IE SPSMFS+ VPHHYIELNVAFQMMPQFFNHFFSNNTH SKI LQP + T+K M E Q+S MS+++ K+L+R
Subjt:  MLMFRLENLDPFLDAILALHRFGKNGTIECSPSMFSIIVPHHYIELNVAFQMMPQFFNHFFSNNTHSSKIFLQPFYITLKHMHESQFSRMSLYLLKHLDR

Query:  LVLKFFSPRNELSLLRKFEVMSAVKEDLGNIDLGTFVSIDSRQFRHVVMECRDYL
        L++KF+SPR+EL L+RKFEV  AV ED GN+D   FVSIDS QFRH++ ECRDY+
Subjt:  LVLKFFSPRNELSLLRKFEVMSAVKEDLGNIDLGTFVSIDSRQFRHVVMECRDYL

KGN45635.1 hypothetical protein Csa_005498 [Cucumis sativus]7.0e-5472.37Show/hide
Query:  MFRLENLDPFLDAILALHRFGKNGTIECSPSMFSIIVPHHYIELNVAFQMMPQFFNHFFSNNTHSSKIFLQPFYITLKHMHESQFSRMSLYLLKHLDRLV
        MF LENLDPFLDAI  L RFG+N  IECSPSMFS+IVPHH +ELNVAFQMMPQFFN+FFSN THSSKI +QP + T+K M E Q + +S ++LK LDRLV
Subjt:  MFRLENLDPFLDAILALHRFGKNGTIECSPSMFSIIVPHHYIELNVAFQMMPQFFNHFFSNNTHSSKIFLQPFYITLKHMHESQFSRMSLYLLKHLDRLV

Query:  LKFFSPRNELSLLRKFEVMSAVKEDLGNIDLGTFVSIDSRQFRHVVMECRDY
        LKF SPRNEL L+RKF +  AVKED+GNIDL TFVSIDS+QFR VV  CRDY
Subjt:  LKFFSPRNELSLLRKFEVMSAVKEDLGNIDLGTFVSIDSRQFRHVVMECRDY

XP_008458681.1 PREDICTED: uncharacterized protein LOC103498009 [Cucumis melo]9.1e-4661.39Show/hide
Query:  MLMFRLENLDPFLDAILALHRFGKNGTIECSPSMFSIIVPHHYIELNVAFQMMPQFFNHFFSNNTHSSKIFLQPFYITLKHMHESQFSRMSLYLLKHLDR
        MLMF LEN+DP LDA+  L R  +N  I+CSPSM SIIV HH ++LNV+FQMMPQFF+HF SN THSSK  +QP Y TLK M ESQ +  S +LL  LD 
Subjt:  MLMFRLENLDPFLDAILALHRFGKNGTIECSPSMFSIIVPHHYIELNVAFQMMPQFFNHFFSNNTHSSKIFLQPFYITLKHMHESQFSRMSLYLLKHLDR

Query:  LVLKFFSPRNELSLLRKFEVMSAVKEDLGNIDLGTFVSIDSRQFRHVVMECRDYLGNI
        LVLKF+SPRNE  L+RKF  ++A KE+L NID  TFVSIDS QFR ++ +CRDY  ++
Subjt:  LVLKFFSPRNELSLLRKFEVMSAVKEDLGNIDLGTFVSIDSRQFRHVVMECRDYLGNI

XP_031737295.1 uncharacterized protein LOC101209763 [Cucumis sativus]6.1e-5064.52Show/hide
Query:  MLMFRLENLDPFLDAILALHRFGKNGTIECSPSMFSIIVPHHYIELNVAFQMMPQFFNHFFSNNTHSSKIFLQPFYITLKHMHESQFSRMSLYLLKHLDR
        ML+F LEN D FLDA+  L RF ++  IE SPSMFSI +PHHYIELNVAFQMMPQFFN++FSN TH SK+ LQP + T+K M E Q+S MSL+L K+L+R
Subjt:  MLMFRLENLDPFLDAILALHRFGKNGTIECSPSMFSIIVPHHYIELNVAFQMMPQFFNHFFSNNTHSSKIFLQPFYITLKHMHESQFSRMSLYLLKHLDR

Query:  LVLKFFSPRNELSLLRKFEVMSAVKEDLGNIDLGTFVSIDSRQFRHVVMECRDYL
        L++KF+SPR EL L+RKF V  AV ED GN+D   FVSIDS QFRH++ ECRDY+
Subjt:  LVLKFFSPRNELSLLRKFEVMSAVKEDLGNIDLGTFVSIDSRQFRHVVMECRDYL

XP_031744101.1 uncharacterized protein LOC116404781 [Cucumis sativus]8.2e-5572.73Show/hide
Query:  MLMFRLENLDPFLDAILALHRFGKNGTIECSPSMFSIIVPHHYIELNVAFQMMPQFFNHFFSNNTHSSKIFLQPFYITLKHMHESQFSRMSLYLLKHLDR
        MLMF LENLDPFLDAI  L RFG+N  IECSPSMFS+IVPHH +ELNVAFQMMPQFFN+FFSN THSSKI +QP + T+K M E Q + +S ++LK LDR
Subjt:  MLMFRLENLDPFLDAILALHRFGKNGTIECSPSMFSIIVPHHYIELNVAFQMMPQFFNHFFSNNTHSSKIFLQPFYITLKHMHESQFSRMSLYLLKHLDR

Query:  LVLKFFSPRNELSLLRKFEVMSAVKEDLGNIDLGTFVSIDSRQFRHVVMECRDY
        LVLKF SPRNEL L+RKF +  AVKED+GNIDL TFVSIDS+QFR VV  CRDY
Subjt:  LVLKFFSPRNELSLLRKFEVMSAVKEDLGNIDLGTFVSIDSRQFRHVVMECRDY

TrEMBL top hitse value%identityAlignment
A0A0A0K7E0 Uncharacterized protein3.4e-5472.37Show/hide
Query:  MFRLENLDPFLDAILALHRFGKNGTIECSPSMFSIIVPHHYIELNVAFQMMPQFFNHFFSNNTHSSKIFLQPFYITLKHMHESQFSRMSLYLLKHLDRLV
        MF LENLDPFLDAI  L RFG+N  IECSPSMFS+IVPHH +ELNVAFQMMPQFFN+FFSN THSSKI +QP + T+K M E Q + +S ++LK LDRLV
Subjt:  MFRLENLDPFLDAILALHRFGKNGTIECSPSMFSIIVPHHYIELNVAFQMMPQFFNHFFSNNTHSSKIFLQPFYITLKHMHESQFSRMSLYLLKHLDRLV

Query:  LKFFSPRNELSLLRKFEVMSAVKEDLGNIDLGTFVSIDSRQFRHVVMECRDY
        LKF SPRNEL L+RKF +  AVKED+GNIDL TFVSIDS+QFR VV  CRDY
Subjt:  LKFFSPRNELSLLRKFEVMSAVKEDLGNIDLGTFVSIDSRQFRHVVMECRDY

A0A1S3C7Y9 uncharacterized protein LOC1034980094.4e-4661.39Show/hide
Query:  MLMFRLENLDPFLDAILALHRFGKNGTIECSPSMFSIIVPHHYIELNVAFQMMPQFFNHFFSNNTHSSKIFLQPFYITLKHMHESQFSRMSLYLLKHLDR
        MLMF LEN+DP LDA+  L R  +N  I+CSPSM SIIV HH ++LNV+FQMMPQFF+HF SN THSSK  +QP Y TLK M ESQ +  S +LL  LD 
Subjt:  MLMFRLENLDPFLDAILALHRFGKNGTIECSPSMFSIIVPHHYIELNVAFQMMPQFFNHFFSNNTHSSKIFLQPFYITLKHMHESQFSRMSLYLLKHLDR

Query:  LVLKFFSPRNELSLLRKFEVMSAVKEDLGNIDLGTFVSIDSRQFRHVVMECRDYLGNI
        LVLKF+SPRNE  L+RKF  ++A KE+L NID  TFVSIDS QFR ++ +CRDY  ++
Subjt:  LVLKFFSPRNELSLLRKFEVMSAVKEDLGNIDLGTFVSIDSRQFRHVVMECRDYLGNI

A0A5D3BV70 Uncharacterized protein6.0e-1969.86Show/hide
Query:  MHESQFSRMSLYLLKHLDRLVLKFFSPRNELSLLRKFEVMSAVKEDLGNIDLGTFVSIDSRQFRHVVMECRDY
        M E Q + +S ++LK LDRLVLKF SPRN+L L+RKF +M AVKED+GNIDL TFVSIDS+QFRHVV+ CRDY
Subjt:  MHESQFSRMSLYLLKHLDRLVLKFFSPRNELSLLRKFEVMSAVKEDLGNIDLGTFVSIDSRQFRHVVMECRDY

A0A5D3CM59 Uncharacterized protein8.3e-5367.1Show/hide
Query:  MLMFRLENLDPFLDAILALHRFGKNGTIECSPSMFSIIVPHHYIELNVAFQMMPQFFNHFFSNNTHSSKIFLQPFYITLKHMHESQFSRMSLYLLKHLDR
        ML+F LEN D FLDA+  L RF +N  IE SPSMFS+ VPHHYIELNVAFQMMPQFFNHFFSNNTH SKI LQP + T+K M E Q+S MS+++ K+L+R
Subjt:  MLMFRLENLDPFLDAILALHRFGKNGTIECSPSMFSIIVPHHYIELNVAFQMMPQFFNHFFSNNTHSSKIFLQPFYITLKHMHESQFSRMSLYLLKHLDR

Query:  LVLKFFSPRNELSLLRKFEVMSAVKEDLGNIDLGTFVSIDSRQFRHVVMECRDYL
        L++KF+SPR+EL L+RKFEV  AV ED GN+D   FVSIDS QFRH++ ECRDY+
Subjt:  LVLKFFSPRNELSLLRKFEVMSAVKEDLGNIDLGTFVSIDSRQFRHVVMECRDYL

A0A6J1H3B0 uncharacterized protein LOC1114600106.9e-3146.45Show/hide
Query:  MLMFRLENLDPFLDAILALHRFGKNGTIECSPSMFSIIVPHHYIELNVAFQMMPQFFNHFFSNNTHSSKIFLQPFYITLKHMHESQFSRMSLYLLKHLDR
        ML+ +++  D  L+ I  L+RF ++  +ECSP +FSI V HH +ELNVAFQMMP+FF  F+S+ +H SKI L P Y T++ M        +LY+L+  +R
Subjt:  MLMFRLENLDPFLDAILALHRFGKNGTIECSPSMFSIIVPHHYIELNVAFQMMPQFFNHFFSNNTHSSKIFLQPFYITLKHMHESQFSRMSLYLLKHLDR

Query:  LVLKFFSPRNELSLLRKFEVMSAVKEDLGNIDLGTFVSIDSRQFRHVVMECRDYL
        L LKF  P NE+ LLR   +   +K  +G I+L TFVSIDS  FR +V+E R Y+
Subjt:  LVLKFFSPRNELSLLRKFEVMSAVKEDLGNIDLGTFVSIDSRQFRHVVMECRDYL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAATGTTTAGGCTTGAGAACTTGGATCCTTTTTTGGATGCAATATTGGCTCTACATCGATTTGGTAAAAATGGTACCATTGAATGCTCCCCATCAATGTTCTCCAT
AATAGTTCCTCACCATTATATTGAATTAAATGTAGCCTTTCAAATGATGCCTCAATTCTTCAATCACTTCTTCTCCAACAACACTCACTCTTCAAAGATCTTCCTTCAAC
CATTCTACATTACCCTCAAACACATGCATGAATCCCAATTTTCAAGAATGTCTCTCTATCTTCTTAAACATCTTGATCGCTTAGTCCTCAAATTTTTCTCTCCAAGGAAT
GAGCTATCCTTGCTTCGTAAATTTGAAGTCATGAGTGCGGTAAAGGAGGATTTGGGAAACATTGATTTGGGAACCTTTGTTTCAATTGATTCACGACAATTTAGACACGT
TGTAATGGAGTGTCGTGATTATTTGGGTAATATCTTATATAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTAATGTTTAGGCTTGAGAACTTGGATCCTTTTTTGGATGCAATATTGGCTCTACATCGATTTGGTAAAAATGGTACCATTGAATGCTCCCCATCAATGTTCTCCAT
AATAGTTCCTCACCATTATATTGAATTAAATGTAGCCTTTCAAATGATGCCTCAATTCTTCAATCACTTCTTCTCCAACAACACTCACTCTTCAAAGATCTTCCTTCAAC
CATTCTACATTACCCTCAAACACATGCATGAATCCCAATTTTCAAGAATGTCTCTCTATCTTCTTAAACATCTTGATCGCTTAGTCCTCAAATTTTTCTCTCCAAGGAAT
GAGCTATCCTTGCTTCGTAAATTTGAAGTCATGAGTGCGGTAAAGGAGGATTTGGGAAACATTGATTTGGGAACCTTTGTTTCAATTGATTCACGACAATTTAGACACGT
TGTAATGGAGTGTCGTGATTATTTGGGTAATATCTTATATAATTAA
Protein sequenceShow/hide protein sequence
MLMFRLENLDPFLDAILALHRFGKNGTIECSPSMFSIIVPHHYIELNVAFQMMPQFFNHFFSNNTHSSKIFLQPFYITLKHMHESQFSRMSLYLLKHLDRLVLKFFSPRN
ELSLLRKFEVMSAVKEDLGNIDLGTFVSIDSRQFRHVVMECRDYLGNILYN