; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10010470 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10010470
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationChr06:22514114..22514688
RNA-Seq ExpressionHG10010470
SyntenyHG10010470
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045262.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.0e-2043.51Show/hide
Query:  MFLIKVNNLASFLNATSLLTQLANDQVCLKFSPSTFSIIACFPSPPFVSMILMRRSFFSSYFVDRNHILKISLQSLHNALLQGQRFSSMTLHLLEPLNRI
        MFL+K+ N    L+ATS L Q++ D   LKF+PS F IIA   SP F++ + +   +F+++ VD +H  K+SL+S H+A+L G  F+SMT+HLL+  N++
Subjt:  MFLIKVNNLASFLNATSLLTQLANDQVCLKFSPSTFSIIACFPSPPFVSMILMRRSFFSSYFVDRNHILKISLQSLHNALLQGQRFSSMTLHLLEPLNRI

Query:  LLRFET-SRHLAPLLLHHELTILP--MEDWSPGQ---INPKNFCIGSEMFKRII
        +LRF+T S  + P  LHHELT+ P   ED   GQ      K F + S+  +RII
Subjt:  LLRFET-SRHLAPLLLHHELTILP--MEDWSPGQ---INPKNFCIGSEMFKRII

KGN45637.1 hypothetical protein Csa_005027 [Cucumis sativus]2.7e-2948.47Show/hide
Query:  MFLIKVNNLASFLNATSLLTQLANDQVCLKFSPSTFSIIACFPSPPFVSMILMRRSFFSSYFVDRNHILKISLQSLHNALLQGQRFSSMTLHLLEPLNRI
        MF IK++ L   L+A SL T + ND++CLKFS STFSIIA +  P F +M+ +    F+ YFV R+HIL++SL SLH AL +GQ +SS+ +HL E  N I
Subjt:  MFLIKVNNLASFLNATSLLTQLANDQVCLKFSPSTFSIIACFPSPPFVSMILMRRSFFSSYFVDRNHILKISLQSLHNALLQGQRFSSMTLHLLEPLNRI

Query:  LLRFETSRHLAPLLLHHELTI-LPMEDWSPGQI--NPKNFCIGSEMFKRIITTFSVNNEVKSN
         L FE SRH +P+ +  ++   +PMEDWS G+I  + K+F I S++F+ IITTF   NEV ++
Subjt:  LLRFETSRHLAPLLLHHELTI-LPMEDWSPGQI--NPKNFCIGSEMFKRIITTFSVNNEVKSN

KGN61523.1 hypothetical protein Csa_006491 [Cucumis sativus]3.7e-2357.94Show/hide
Query:  MFLIKVNNLASFLNATSLLTQLANDQVCLKFSPSTFSIIACFPSPPFVSMILMRRSFFSSYFVDRNHILKISLQSLHNALLQGQRFSSMTLHLLEPLNRI
        MF IKV+NL  FL+ATSL T+  ND++CLKFSPSTFS+IA +  P F +M+ M    F  Y VDRNHI +ISL+   NALL+GQ +SSM++HL EP N I
Subjt:  MFLIKVNNLASFLNATSLLTQLANDQVCLKFSPSTFSIIACFPSPPFVSMILMRRSFFSSYFVDRNHILKISLQSLHNALLQGQRFSSMTLHLLEPLNRI

Query:  LLRFETS
        L +FE S
Subjt:  LLRFETS

XP_008464344.1 PREDICTED: uncharacterized protein LOC103502250 [Cucumis melo]1.0e-2043.51Show/hide
Query:  MFLIKVNNLASFLNATSLLTQLANDQVCLKFSPSTFSIIACFPSPPFVSMILMRRSFFSSYFVDRNHILKISLQSLHNALLQGQRFSSMTLHLLEPLNRI
        MFL+K+ N    L+ATS L Q++ D   LKF+PS F IIA   SP F++ + +   +F+++ VD +H  K+SL+S H+A+L G  F+SMT+HLL+  N++
Subjt:  MFLIKVNNLASFLNATSLLTQLANDQVCLKFSPSTFSIIACFPSPPFVSMILMRRSFFSSYFVDRNHILKISLQSLHNALLQGQRFSSMTLHLLEPLNRI

Query:  LLRFET-SRHLAPLLLHHELTILP--MEDWSPGQ---INPKNFCIGSEMFKRII
        +LRF+T S  + P  LHHELT+ P   ED   GQ      K F + S+  +RII
Subjt:  LLRFET-SRHLAPLLLHHELTILP--MEDWSPGQ---INPKNFCIGSEMFKRII

XP_031736681.1 uncharacterized protein LOC116402062 [Cucumis sativus]1.7e-2345.06Show/hide
Query:  MFLIKVNNLASFLNATSLLTQLANDQVCLKFSPSTFSIIACFPSPPFVSMILMRRSFFSSYFVDRNHILKISLQSLHNALLQGQRFSSMTLHLLEPLNRI
        MF IK++++  FL+AT L  +L +D++CLKF PST SII  +  P F   + + +  F  Y VDRNHI +ISL S ++ALL+ Q F+++ +HL E  N+I
Subjt:  MFLIKVNNLASFLNATSLLTQLANDQVCLKFSPSTFSIIACFPSPPFVSMILMRRSFFSSYFVDRNHILKISLQSLHNALLQGQRFSSMTLHLLEPLNRI

Query:  LLRFETSRHLAPLLLHHELT-ILPMEDWSPGQIN--PKNFCIGSEMFKRIITTFSVNNEVKS
        LL FE S   + L L+ ELT ++PMEDWS  Q+N   K F I S++F  II  FS   E  +
Subjt:  LLRFETSRHLAPLLLHHELT-ILPMEDWSPGQIN--PKNFCIGSEMFKRIITTFSVNNEVKS

TrEMBL top hitse value%identityAlignment
A0A0A0K902 Uncharacterized protein2.4e-2040.36Show/hide
Query:  MFLIKVNNLASFLNATSLLTQLANDQVCLKFSPSTFSIIACFPSPPFVSMILMRRSFFSSYFVDRNHILKISLQSLHNALLQGQRFSSMTLHLLEPLNRI
        MFL+K+ N    L+ATS   Q++ D   +KF+PS F II+   SP F++ + +   +F+S+ VD +H  K+SL+S H+A+L G  F+SMT+HLL+  N+I
Subjt:  MFLIKVNNLASFLNATSLLTQLANDQVCLKFSPSTFSIIACFPSPPFVSMILMRRSFFSSYFVDRNHILKISLQSLHNALLQGQRFSSMTLHLLEPLNRI

Query:  LLRFET-SRHLAPLLLHHELTILP--MEDWSPGQ---INPKNFCIGSEMFKRIITTFSVNNEVKSN
        +LRF+T S  + P  LHHEL + P   ED   GQ      K F + S+  +RII    +     SN
Subjt:  LLRFET-SRHLAPLLLHHELTILP--MEDWSPGQ---INPKNFCIGSEMFKRIITTFSVNNEVKSN

A0A0A0KB76 Uncharacterized protein1.3e-2948.47Show/hide
Query:  MFLIKVNNLASFLNATSLLTQLANDQVCLKFSPSTFSIIACFPSPPFVSMILMRRSFFSSYFVDRNHILKISLQSLHNALLQGQRFSSMTLHLLEPLNRI
        MF IK++ L   L+A SL T + ND++CLKFS STFSIIA +  P F +M+ +    F+ YFV R+HIL++SL SLH AL +GQ +SS+ +HL E  N I
Subjt:  MFLIKVNNLASFLNATSLLTQLANDQVCLKFSPSTFSIIACFPSPPFVSMILMRRSFFSSYFVDRNHILKISLQSLHNALLQGQRFSSMTLHLLEPLNRI

Query:  LLRFETSRHLAPLLLHHELTI-LPMEDWSPGQI--NPKNFCIGSEMFKRIITTFSVNNEVKSN
         L FE SRH +P+ +  ++   +PMEDWS G+I  + K+F I S++F+ IITTF   NEV ++
Subjt:  LLRFETSRHLAPLLLHHELTI-LPMEDWSPGQI--NPKNFCIGSEMFKRIITTFSVNNEVKSN

A0A0A0LIE0 Uncharacterized protein1.8e-2357.94Show/hide
Query:  MFLIKVNNLASFLNATSLLTQLANDQVCLKFSPSTFSIIACFPSPPFVSMILMRRSFFSSYFVDRNHILKISLQSLHNALLQGQRFSSMTLHLLEPLNRI
        MF IKV+NL  FL+ATSL T+  ND++CLKFSPSTFS+IA +  P F +M+ M    F  Y VDRNHI +ISL+   NALL+GQ +SSM++HL EP N I
Subjt:  MFLIKVNNLASFLNATSLLTQLANDQVCLKFSPSTFSIIACFPSPPFVSMILMRRSFFSSYFVDRNHILKISLQSLHNALLQGQRFSSMTLHLLEPLNRI

Query:  LLRFETS
        L +FE S
Subjt:  LLRFETS

A0A1S3CL88 uncharacterized protein LOC1035022504.9e-2143.51Show/hide
Query:  MFLIKVNNLASFLNATSLLTQLANDQVCLKFSPSTFSIIACFPSPPFVSMILMRRSFFSSYFVDRNHILKISLQSLHNALLQGQRFSSMTLHLLEPLNRI
        MFL+K+ N    L+ATS L Q++ D   LKF+PS F IIA   SP F++ + +   +F+++ VD +H  K+SL+S H+A+L G  F+SMT+HLL+  N++
Subjt:  MFLIKVNNLASFLNATSLLTQLANDQVCLKFSPSTFSIIACFPSPPFVSMILMRRSFFSSYFVDRNHILKISLQSLHNALLQGQRFSSMTLHLLEPLNRI

Query:  LLRFET-SRHLAPLLLHHELTILP--MEDWSPGQ---INPKNFCIGSEMFKRII
        +LRF+T S  + P  LHHELT+ P   ED   GQ      K F + S+  +RII
Subjt:  LLRFET-SRHLAPLLLHHELTILP--MEDWSPGQ---INPKNFCIGSEMFKRII

A0A5D3DZ07 LINE-1 retrotransposable element ORF2 protein4.9e-2143.51Show/hide
Query:  MFLIKVNNLASFLNATSLLTQLANDQVCLKFSPSTFSIIACFPSPPFVSMILMRRSFFSSYFVDRNHILKISLQSLHNALLQGQRFSSMTLHLLEPLNRI
        MFL+K+ N    L+ATS L Q++ D   LKF+PS F IIA   SP F++ + +   +F+++ VD +H  K+SL+S H+A+L G  F+SMT+HLL+  N++
Subjt:  MFLIKVNNLASFLNATSLLTQLANDQVCLKFSPSTFSIIACFPSPPFVSMILMRRSFFSSYFVDRNHILKISLQSLHNALLQGQRFSSMTLHLLEPLNRI

Query:  LLRFET-SRHLAPLLLHHELTILP--MEDWSPGQ---INPKNFCIGSEMFKRII
        +LRF+T S  + P  LHHELT+ P   ED   GQ      K F + S+  +RII
Subjt:  LLRFET-SRHLAPLLLHHELTILP--MEDWSPGQ---INPKNFCIGSEMFKRII

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTTAATCAAGGTCAATAATCTTGCTTCTTTTTTGAACGCAACCTCTCTATTAACTCAACTTGCTAATGATCAAGTCTGCCTGAAATTCTCACCGTCGACGTTCTC
GATAATTGCTTGCTTCCCGTCGCCTCCCTTCGTTTCAATGATACTTATGCGTCGATCGTTTTTCTCCAGCTATTTCGTCGATCGGAATCATATTTTAAAGATTTCCCTCC
AATCCCTCCACAATGCTTTGTTGCAAGGCCAAAGGTTTTCGTCAATGACTCTCCATCTTCTGGAACCCCTAAATCGCATACTCCTTAGATTTGAGACTTCAAGGCATTTG
GCACCATTATTATTGCATCATGAATTGACAATCTTGCCTATGGAAGACTGGTCTCCTGGCCAAATAAATCCAAAAAATTTCTGTATTGGTTCAGAAATGTTTAAACGTAT
TATTACAACATTTTCTGTCAATAATGAAGTTAAAAGTAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCTTAATCAAGGTCAATAATCTTGCTTCTTTTTTGAACGCAACCTCTCTATTAACTCAACTTGCTAATGATCAAGTCTGCCTGAAATTCTCACCGTCGACGTTCTC
GATAATTGCTTGCTTCCCGTCGCCTCCCTTCGTTTCAATGATACTTATGCGTCGATCGTTTTTCTCCAGCTATTTCGTCGATCGGAATCATATTTTAAAGATTTCCCTCC
AATCCCTCCACAATGCTTTGTTGCAAGGCCAAAGGTTTTCGTCAATGACTCTCCATCTTCTGGAACCCCTAAATCGCATACTCCTTAGATTTGAGACTTCAAGGCATTTG
GCACCATTATTATTGCATCATGAATTGACAATCTTGCCTATGGAAGACTGGTCTCCTGGCCAAATAAATCCAAAAAATTTCTGTATTGGTTCAGAAATGTTTAAACGTAT
TATTACAACATTTTCTGTCAATAATGAAGTTAAAAGTAATTAA
Protein sequenceShow/hide protein sequence
MFLIKVNNLASFLNATSLLTQLANDQVCLKFSPSTFSIIACFPSPPFVSMILMRRSFFSSYFVDRNHILKISLQSLHNALLQGQRFSSMTLHLLEPLNRILLRFETSRHL
APLLLHHELTILPMEDWSPGQINPKNFCIGSEMFKRIITTFSVNNEVKSN