; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10010596 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10010596
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNase H domain-containing protein
Genome locationChr06:23760956..23761225
RNA-Seq ExpressionHG10010596
SyntenyHG10010596
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031982.1 hypothetical protein E6C27_scaffold134G00730 [Cucumis melo var. makuwa]2.8e-0444.29Show/hide
Query:  LNVDVACHSEKLGVGFGVVVRDWRGNIVAAQSIYRSGRLAAKAGEISAILAGLKFVEETGVGAVVVEFDA
        ++VDVAC     G G+GVV+R+ +G IV AQ+  R      +AG+I AI+ GL  VE  G   V V+ DA
Subjt:  LNVDVACHSEKLGVGFGVVVRDWRGNIVAAQSIYRSGRLAAKAGEISAILAGLKFVEETGVGAVVVEFDA

KAF8408042.1 hypothetical protein HHK36_007182 [Tetracentron sinense]1.3e-0442.11Show/hide
Query:  GGSFKLNVDVACHSEKLGVGFGVVVRDWRGNIVAAQSIYRSGRLAAKAGEISAILAGLKFVEETGVGAVVVEFDAL
        G  FK+N+D A H E    G GVVVRD  G+++AA S   S   +A   E  A   GLKF  E G+  V++E D++
Subjt:  GGSFKLNVDVACHSEKLGVGFGVVVRDWRGNIVAAQSIYRSGRLAAKAGEISAILAGLKFVEETGVGAVVVEFDAL

XP_019150973.1 PREDICTED: uncharacterized protein LOC109147770 [Ipomoea nil]7.4e-0542.47Show/hide
Query:  GSFKLNVDVACHSEKLGVGFGVVVRDWRGNIVAAQSIYRSGRLAAKAGEISAILAGLKFVEETGVGAVVVEFD
        G  KLN D A + E   +GFG V+RD  GN +AA++I   G  A +  E+ +I   L ++ +TG+GAV VE D
Subjt:  GSFKLNVDVACHSEKLGVGFGVVVRDWRGNIVAAQSIYRSGRLAAKAGEISAILAGLKFVEETGVGAVVVEFD

XP_021807757.1 uncharacterized protein LOC110751579 [Prunus avium]3.3e-0544.59Show/hide
Query:  GSFKLNVDVACHSEKLGVGFGVVVRDWRGNIVAAQSIYRSGRLAAKAGEISAILAGLKFVEETGVGAVVVEFDA
        G  KLNVD AC +     G G VVR+  G+++ A S+  +G  +AK  E+ AI  GL+F  ETG  ++VVE DA
Subjt:  GSFKLNVDVACHSEKLGVGFGVVVRDWRGNIVAAQSIYRSGRLAAKAGEISAILAGLKFVEETGVGAVVVEFDA

XP_023920968.1 uncharacterized protein LOC112032440 [Quercus suber]1.3e-0445.33Show/hide
Query:  GSFKLNVDVACHSEKLGVGFGVVVRDWRGNIVAAQSIYRSGRLAAKAGEISAILAGLKFVEETGVGAVVVEFDAL
        G FK+NVD A  S+    G GV+VRD  GN++AA +      L A A E  A+  G+ FVEE G+  VV E D+L
Subjt:  GSFKLNVDVACHSEKLGVGFGVVVRDWRGNIVAAQSIYRSGRLAAKAGEISAILAGLKFVEETGVGAVVVEFDAL

TrEMBL top hitse value%identityAlignment
A0A2P5CZ49 Ribonuclease H-like domain containing protein1.8e-0434.67Show/hide
Query:  GSFKLNVDVACHSEKLGVGFGVVVRDWRGNIVAAQSIYRSGRLAAKAGEISAILAGLKFVEETGVGAVVVEFDAL
        G FK+NVDVA +++   VG G ++R+ +G ++A  +   +G L+AK  E  A++  L +  + G+    +E DAL
Subjt:  GSFKLNVDVACHSEKLGVGFGVVVRDWRGNIVAAQSIYRSGRLAAKAGEISAILAGLKFVEETGVGAVVVEFDAL

A0A5A7SLR6 RNase H domain-containing protein1.4e-0444.29Show/hide
Query:  LNVDVACHSEKLGVGFGVVVRDWRGNIVAAQSIYRSGRLAAKAGEISAILAGLKFVEETGVGAVVVEFDA
        ++VDVAC     G G+GVV+R+ +G IV AQ+  R      +AG+I AI+ GL  VE  G   V V+ DA
Subjt:  LNVDVACHSEKLGVGFGVVVRDWRGNIVAAQSIYRSGRLAAKAGEISAILAGLKFVEETGVGAVVVEFDA

A0A6P5RZ31 uncharacterized protein LOC1107515791.6e-0544.59Show/hide
Query:  GSFKLNVDVACHSEKLGVGFGVVVRDWRGNIVAAQSIYRSGRLAAKAGEISAILAGLKFVEETGVGAVVVEFDA
        G  KLNVD AC +     G G VVR+  G+++ A S+  +G  +AK  E+ AI  GL+F  ETG  ++VVE DA
Subjt:  GSFKLNVDVACHSEKLGVGFGVVVRDWRGNIVAAQSIYRSGRLAAKAGEISAILAGLKFVEETGVGAVVVEFDA

A0A803PD31 Uncharacterized protein1.0e-0438.89Show/hide
Query:  FKLNVDVACHSEKLGVGFGVVVRDWRGNIVAAQSIYRSGRLAAKAGEISAILAGLKFVEETGVGAVVVEFDA
        ++LN+D A  +E+  +GFG V++DWRGN+VA  SI  +G       E  A+ AGL +     +   VVE D+
Subjt:  FKLNVDVACHSEKLGVGFGVVVRDWRGNIVAAQSIYRSGRLAAKAGEISAILAGLKFVEETGVGAVVVEFDA

A0A803Q0L9 Uncharacterized protein2.1e-0541.1Show/hide
Query:  GSFKLNVDVACHSEKLGVGFGVVVRDWRGNIVAAQSIYRSGRLAAKAGEISAILAGLKFVEETGVGAVVVEFD
        G+ KL VD A  S +  +G G +VRD  G ++AA++  RSG++  KA E  A+L GLK+  E G+    +E D
Subjt:  GSFKLNVDVACHSEKLGVGFGVVVRDWRGNIVAAQSIYRSGRLAAKAGEISAILAGLKFVEETGVGAVVVEFD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCTATGCCATTGGAGGCTCTTTCAAGTTGAATGTGGATGTGGCGTGTCATTCCGAGAAGCTCGGAGTGGGTTTTGGAGTCGTCGTTCGCGACTGGAGGGGGAATAT
TGTCGCTGCTCAATCTATTTACCGATCGGGGAGGCTTGCGGCAAAGGCGGGTGAGATAAGCGCCATTCTCGCCGGGTTGAAGTTCGTGGAAGAGACCGGAGTTGGAGCTG
TGGTGGTGGAATTTGATGCGTTGTGGTGGTTGGCAATTTGCATTCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCTATGCCATTGGAGGCTCTTTCAAGTTGAATGTGGATGTGGCGTGTCATTCCGAGAAGCTCGGAGTGGGTTTTGGAGTCGTCGTTCGCGACTGGAGGGGGAATAT
TGTCGCTGCTCAATCTATTTACCGATCGGGGAGGCTTGCGGCAAAGGCGGGTGAGATAAGCGCCATTCTCGCCGGGTTGAAGTTCGTGGAAGAGACCGGAGTTGGAGCTG
TGGTGGTGGAATTTGATGCGTTGTGGTGGTTGGCAATTTGCATTCAATGA
Protein sequenceShow/hide protein sequence
MVYAIGGSFKLNVDVACHSEKLGVGFGVVVRDWRGNIVAAQSIYRSGRLAAKAGEISAILAGLKFVEETGVGAVVVEFDALWWLAICIQ