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HG10010629 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10010629
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionChromodomain-helicase-DNA-binding protein 1-like
Genome locationChr06:24141642..24141866
RNA-Seq ExpressionHG10010629
SyntenyHG10010629
Gene Ontology termsGO:0004386 - helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR038718 - SNF2-like, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7025346.1 putative helicase CHR10, partial [Cucurbita argyrosperma subsp. argyrosperma]8.5e-2391.67Show/hide
Query:  MNYERRLKAAAKLILHHDSGSDNSPESCPDFGVTATLKPYQVEGVLWLIRRYHLGVNIIL
        MNYERRLKAAAKLIL HDS SDNSP+SCPD GVTATLKPYQVEGVLWLIRRYHLGVN+IL
Subjt:  MNYERRLKAAAKLILHHDSGSDNSPESCPDFGVTATLKPYQVEGVLWLIRRYHLGVNIIL
XP_022959610.1 probable helicase CHR10 isoform X1 [Cucurbita moschata]1.7e-2391.8Show/hide
Query:  MNYERRLKAAAKLILHHDSGSDNSPESCPDFGVTATLKPYQVEGVLWLIRRYHLGVNIILG
        MNYERRLKAAAKLIL HDS SDNSP+SCPD GVTATLKPYQVEGVLWLIRRYHLGVN+ILG
Subjt:  MNYERRLKAAAKLILHHDSGSDNSPESCPDFGVTATLKPYQVEGVLWLIRRYHLGVNIILG
XP_023004934.1 probable helicase CHR10 isoform X1 [Cucurbita maxima]2.0e-2493.44Show/hide
Query:  MNYERRLKAAAKLILHHDSGSDNSPESCPDFGVTATLKPYQVEGVLWLIRRYHLGVNIILG
        MNYERRLKAAAKLIL HDSGSDNSP+SCPD GVTATLKPYQVEGVLWLIRRYHLGVN+ILG
Subjt:  MNYERRLKAAAKLILHHDSGSDNSPESCPDFGVTATLKPYQVEGVLWLIRRYHLGVNIILG
XP_023515240.1 probable helicase CHR10 isoform X1 [Cucurbita pepo subsp. pepo]5.0e-2391.8Show/hide
Query:  MNYERRLKAAAKLILHHDSGSDNSPESCPDFGVTATLKPYQVEGVLWLIRRYHLGVNIILG
        MNYERRLKAAAKLIL HDS SDNSP+SCPD GVTATLKPYQVEGVLWLIRRYHLGVN ILG
Subjt:  MNYERRLKAAAKLILHHDSGSDNSPESCPDFGVTATLKPYQVEGVLWLIRRYHLGVNIILG
XP_038876157.1 probable helicase CHR10 isoform X1 [Benincasa hispida]4.1e-2595.08Show/hide
Query:  MNYERRLKAAAKLILHHDSGSDNSPESCPDFGVTATLKPYQVEGVLWLIRRYHLGVNIILG
        MNYE RLKAAAKLIL HDSGSDNSPESCPDFGVTATLKPYQVEGVLWLIRRYHLGVN+ILG
Subjt:  MNYERRLKAAAKLILHHDSGSDNSPESCPDFGVTATLKPYQVEGVLWLIRRYHLGVNIILG
TrEMBL top hitse value%identityAlignment
A0A1S3CAH8 probable helicase CHR10 isoform X25.0e-2185.25Show/hide
Query:  MNYERRLKAAAKLILHHDSGSDNSPESCPDFGVTATLKPYQVEGVLWLIRRYHLGVNIILG
        MNYERRLKAAAKLIL HDSGSDNS  S  DFGVTATLKPYQ++GV WLIRRYHLGVN+ILG
Subjt:  MNYERRLKAAAKLILHHDSGSDNSPESCPDFGVTATLKPYQVEGVLWLIRRYHLGVNIILG
A0A1S3CC69 probable helicase CHR10 isoform X15.0e-2185.25Show/hide
Query:  MNYERRLKAAAKLILHHDSGSDNSPESCPDFGVTATLKPYQVEGVLWLIRRYHLGVNIILG
        MNYERRLKAAAKLIL HDSGSDNS  S  DFGVTATLKPYQ++GV WLIRRYHLGVN+ILG
Subjt:  MNYERRLKAAAKLILHHDSGSDNSPESCPDFGVTATLKPYQVEGVLWLIRRYHLGVNIILG
A0A6J1DG36 probable helicase CHR101.9e-2083.61Show/hide
Query:  MNYERRLKAAAKLILHHDSGSDNSPESCPDFGVTATLKPYQVEGVLWLIRRYHLGVNIILG
        M+YERRL+AAAKLIL  DS +DN PE+CPDFGVTATLKPYQVEGVLWLIRRY LGVN+ILG
Subjt:  MNYERRLKAAAKLILHHDSGSDNSPESCPDFGVTATLKPYQVEGVLWLIRRYHLGVNIILG
A0A6J1H6S3 probable helicase CHR10 isoform X18.3e-2491.8Show/hide
Query:  MNYERRLKAAAKLILHHDSGSDNSPESCPDFGVTATLKPYQVEGVLWLIRRYHLGVNIILG
        MNYERRLKAAAKLIL HDS SDNSP+SCPD GVTATLKPYQVEGVLWLIRRYHLGVN+ILG
Subjt:  MNYERRLKAAAKLILHHDSGSDNSPESCPDFGVTATLKPYQVEGVLWLIRRYHLGVNIILG
A0A6J1KW01 probable helicase CHR10 isoform X19.8e-2593.44Show/hide
Query:  MNYERRLKAAAKLILHHDSGSDNSPESCPDFGVTATLKPYQVEGVLWLIRRYHLGVNIILG
        MNYERRLKAAAKLIL HDSGSDNSP+SCPD GVTATLKPYQVEGVLWLIRRYHLGVN+ILG
Subjt:  MNYERRLKAAAKLILHHDSGSDNSPESCPDFGVTATLKPYQVEGVLWLIRRYHLGVNIILG
SwissProt top hitse value%identityAlignment
F4IV45 Probable helicase CHR108.0e-1661.67Show/hide
Query:  MNYERRLKAAAKLILHHDSGSDNSPESCPDFGVTATLKPYQVEGVLWLIRRYHLGVNIIL
        M YERRL+AAA++IL  ++   N+P  C +FGVTATLKP+QVEGV WLI++Y LGVN++L
Subjt:  MNYERRLKAAAKLILHHDSGSDNSPESCPDFGVTATLKPYQVEGVLWLIRRYHLGVNIIL
Arabidopsis top hitse value%identityAlignment
AT2G44980.1 SNF2 domain-containing protein / helicase domain-containing protein5.7e-1761.67Show/hide
Query:  MNYERRLKAAAKLILHHDSGSDNSPESCPDFGVTATLKPYQVEGVLWLIRRYHLGVNIIL
        M YERRL+AAA++IL  ++   N+P  C +FGVTATLKP+QVEGV WLI++Y LGVN++L
Subjt:  MNYERRLKAAAKLILHHDSGSDNSPESCPDFGVTATLKPYQVEGVLWLIRRYHLGVNIIL
AT2G44980.2 SNF2 domain-containing protein / helicase domain-containing protein5.7e-1761.67Show/hide
Query:  MNYERRLKAAAKLILHHDSGSDNSPESCPDFGVTATLKPYQVEGVLWLIRRYHLGVNIIL
        M YERRL+AAA++IL  ++   N+P  C +FGVTATLKP+QVEGV WLI++Y LGVN++L
Subjt:  MNYERRLKAAAKLILHHDSGSDNSPESCPDFGVTATLKPYQVEGVLWLIRRYHLGVNIIL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTACGAGAGAAGGCTAAAAGCGGCGGCGAAGCTCATACTTCACCACGATTCTGGCTCCGACAACTCGCCGGAATCCTGTCCGGACTTCGGAGTTACGGCGACTCT
GAAACCCTACCAAGTTGAAGGAGTTCTATGGCTAATTCGGCGATATCATCTTGGCGTCAACATTATTCTCGGTTACACTTCCATCTCATTTTTAGGAATTACTGATGTTG
AATGA
mRNA sequenceShow/hide mRNA sequence
ATGAATTACGAGAGAAGGCTAAAAGCGGCGGCGAAGCTCATACTTCACCACGATTCTGGCTCCGACAACTCGCCGGAATCCTGTCCGGACTTCGGAGTTACGGCGACTCT
GAAACCCTACCAAGTTGAAGGAGTTCTATGGCTAATTCGGCGATATCATCTTGGCGTCAACATTATTCTCGGTTACACTTCCATCTCATTTTTAGGAATTACTGATGTTG
AATGA
Protein sequenceShow/hide protein sequence
MNYERRLKAAAKLILHHDSGSDNSPESCPDFGVTATLKPYQVEGVLWLIRRYHLGVNIILGYTSISFLGITDVE