CuGenDBv2

Gene ID	HG10010708
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	LITAF domain-containing protein
Genome location	Chr06:25067545..25069187
RNA-Seq Expression	HG10010708
Synteny	HG10010708
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR006629 - LPS-induced tumour necrosis factor alpha factor IPR037519 - LITAF domain containing protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0039847.1 zf-LITAF-like domain-containing protein [Cucumis melo var. makuwa]

1.6e-52

77.44

Show/hide

Query:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTI----------------------SKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVGVPLY GNN YQAGQIP NAIFGDPQGVPI QT+                      SKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTI----------------------SKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALP
        CPSCKEKVGDFEKLDRCAVMDPPHWTQPS+ALP
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALP

XP_004140553.1 GSH-induced LITAF domain protein [Cucumis sativus]

1.2e-52

77.44

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Query:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTI----------------------SKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVGVPLY GNN YQAGQIP NAIFGDP GVPI QT+                      SKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTI----------------------SKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALP
        CPSCKEKVGDFEKLDRCAVMDPPHWTQPS+ALP
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALP

XP_022954275.1 GSH-induced LITAF domain protein [Cucurbita moschata]

1.2e-52

76.87

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Query:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTI----------------------SKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKNDEPVVG+P Y GNNAYQAGQIP NAIFG PQGVPIHQT+                      SKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTI----------------------SKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
        CPSCKEKVGDFEK D CAVMDPPHWTQPSFALPA
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA

XP_022991744.1 GSH-induced LITAF domain protein [Cucurbita maxima]

1.6e-52

76.12

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Query:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTI----------------------SKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKNDEPVVG+P Y GNN+YQAGQIP NAIFG PQGVPIHQT+                      SKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTI----------------------SKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
        CPSCKEKVGDFEK D CAVMDPPHWTQPSFALPA
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA

XP_038906445.1 GSH-induced LITAF domain protein [Benincasa hispida]

5.4e-53

76.87

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Query:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTI----------------------SKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKNDEPVVG+PLYDGNN YQAGQIPSNAIFGDPQGVPI QT+                      SKISSAAVVGCM PF+LGVCFL PSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTI----------------------SKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
        CPSCKEKVGDFEK+DRCAVMDPP+WTQPSFALPA
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KDG7 LITAF domain-containing protein

5.8e-53

77.44

Show/hide

Query:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTI----------------------SKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVGVPLY GNN YQAGQIP NAIFGDP GVPI QT+                      SKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTI----------------------SKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALP
        CPSCKEKVGDFEKLDRCAVMDPPHWTQPS+ALP
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALP

A0A5D3DMB0 Zf-LITAF-like domain-containing protein

7.6e-53

77.44

Show/hide

Query:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTI----------------------SKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKN EPVVGVPLY GNN YQAGQIP NAIFGDPQGVPI QT+                      SKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTI----------------------SKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALP
        CPSCKEKVGDFEKLDRCAVMDPPHWTQPS+ALP
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALP

A0A6J1D5M9 GSH-induced LITAF domain protein

9.9e-53

76.12

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Query:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTI----------------------SKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKNDEPVVG+PLY G+NAYQAGQIPSNAI+GDPQGVPI QT+                      SKISSAAVVGCM+PFMLGVCFL PSM+CLWHKYHY
Subjt:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTI----------------------SKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
        CP+CKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA

A0A6J1GS01 GSH-induced LITAF domain protein

5.8e-53

76.87

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Query:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTI----------------------SKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKNDEPVVG+P Y GNNAYQAGQIP NAIFG PQGVPIHQT+                      SKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTI----------------------SKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
        CPSCKEKVGDFEK D CAVMDPPHWTQPSFALPA
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA

A0A6J1JVN9 GSH-induced LITAF domain protein

7.6e-53

76.12

Show/hide

Query:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTI----------------------SKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        MSKNDEPVVG+P Y GNN+YQAGQIP NAIFG PQGVPIHQT+                      SKIS AAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
Subjt:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTI----------------------SKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
        CPSCKEKVGDFEK D CAVMDPPHWTQPSFALPA
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA

SwissProt top hits

e value

%identity

Alignment

Q94CD4 GSH-induced LITAF domain protein

7.8e-39

58.21

Show/hide

Query:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTI----------------------SKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        M+K    V+GVP Y G N YQAG +P NAI+GDP G PI QTI                      SK   AAVV CMMPFMLG CFLCPSMDCLW+K H+
Subjt:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTI----------------------SKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
        CP C  KV DFEK D C VMDPP W QPSFALPA
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA

Arabidopsis top hits

e value

%identity

Alignment

AT5G13190.1 CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

5.6e-40

58.21

Show/hide

Query:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTI----------------------SKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY
        M+K    V+GVP Y G N YQAG +P NAI+GDP G PI QTI                      SK   AAVV CMMPFMLG CFLCPSMDCLW+K H+
Subjt:  MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTI----------------------SKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHY

Query:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA
        CP C  KV DFEK D C VMDPP W QPSFALPA
Subjt:  CPSCKEKVGDFEKLDRCAVMDPPHWTQPSFALPA

Sequences

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CDS sequence

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ATGTCCAAGAACGACGAGCCGGTAGTCGGAGTTCCACTCTACGACGGCAACAACGCCTATCAGGCCGGCCAGATCCCTTCCAACGCCATTTTTGGCGATCCCCAGGGGGT
TCCTATCCACCAAACCATATCAAAGATAAGTTCAGCTGCTGTCGTTGGTTGTATGATGCCATTTATGTTGGGAGTATGCTTTCTTTGTCCTTCGATGGACTGCCTTTGGC
ATAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTTGGTGATTTTGAGAAACTGGATAGGTGTGCTGTGATGGATCCTCCACACTGGACACAGCCAAGCTTCGCATTG
CCTGCTTGA

mRNA sequence

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Protein sequence

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MSKNDEPVVGVPLYDGNNAYQAGQIPSNAIFGDPQGVPIHQTISKISSAAVVGCMMPFMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDRCAVMDPPHWTQPSFAL
PA

HG10010708 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome