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HG10010723 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10010723
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description40S ribosomal protein S27
Genome locationChr06:25221194..25225131
RNA-Seq ExpressionHG10010723
SyntenyHG10010723
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR023407 - Ribosomal protein S27, zinc-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33694.1 hypothetical protein [Cucumis melo subsp. melo]3.3e-5190.6Show/hide
Query:  GGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTR
        GGS  SEYMKGEYAPIYIVMGMVAV +SI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQD+ KTLPDPVH DPFTR
Subjt:  GGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTR

Query:  PRNAETLKTAGVDPTRR
        PRNAETLKTAGVDPTRR
Subjt:  PRNAETLKTAGVDPTRR

KAA0039866.1 putative Ribosome biogenesis protein NEP1-like [Cucumis melo var. makuwa]1.0e-5291.45Show/hide
Query:  GGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTR
        GGS +SEYMKGEYAPIYIVMGMVAV +SI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQD+ KTLPDPVHPDPFTR
Subjt:  GGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTR

Query:  PRNAETLKTAGVDPTRR
        PRNAETLKTAGVDPTRR
Subjt:  PRNAETLKTAGVDPTRR

XP_004140656.2 uncharacterized protein LOC101206372 [Cucumis sativus]1.2e-5088.89Show/hide
Query:  GGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTR
        GGS  SEYMKGEYAPIYIVMGMVAV +SI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQ + KTL DPVHPDPFTR
Subjt:  GGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTR

Query:  PRNAETLKTAGVDPTRR
        PRNAETLKTAG+DPTRR
Subjt:  PRNAETLKTAGVDPTRR

XP_008459927.1 PREDICTED: uncharacterized protein LOC103498899 [Cucumis melo]3.3e-5190.6Show/hide
Query:  GGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTR
        GGS  SEYMKGEYAPIYIVMGMVAV +SI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQD+ KTLPDPVH DPFTR
Subjt:  GGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTR

Query:  PRNAETLKTAGVDPTRR
        PRNAETLKTAGVDPTRR
Subjt:  PRNAETLKTAGVDPTRR

XP_038906484.1 uncharacterized protein LOC120092464 [Benincasa hispida]1.5e-5188.89Show/hide
Query:  GGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTR
        GGSS SEYMKGEYAPIYIV+GMVAVA+SIGTHTAKQQLLHSPVVN +KKKRESIPEV+DPDT+I SA+KFINKSFLRKVAHIQ++ KTLPDPVHP+PFTR
Subjt:  GGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTR

Query:  PRNAETLKTAGVDPTRR
        PRNAETLKTAGVDPTRR
Subjt:  PRNAETLKTAGVDPTRR

TrEMBL top hitse value%identityAlignment
A0A0A0KC39 Uncharacterized protein6.0e-5188.89Show/hide
Query:  GGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTR
        GGS  SEYMKGEYAPIYIVMGMVAV +SI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQ + KTL DPVHPDPFTR
Subjt:  GGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTR

Query:  PRNAETLKTAGVDPTRR
        PRNAETLKTAG+DPTRR
Subjt:  PRNAETLKTAGVDPTRR

A0A1S3CBE5 uncharacterized protein LOC1034988991.6e-5190.6Show/hide
Query:  GGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTR
        GGS  SEYMKGEYAPIYIVMGMVAV +SI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQD+ KTLPDPVH DPFTR
Subjt:  GGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTR

Query:  PRNAETLKTAGVDPTRR
        PRNAETLKTAGVDPTRR
Subjt:  PRNAETLKTAGVDPTRR

A0A5D3DLZ1 Putative Ribosome biogenesis protein NEP1-like4.9e-5391.45Show/hide
Query:  GGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTR
        GGS +SEYMKGEYAPIYIVMGMVAV +SI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQD+ KTLPDPVHPDPFTR
Subjt:  GGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTR

Query:  PRNAETLKTAGVDPTRR
        PRNAETLKTAGVDPTRR
Subjt:  PRNAETLKTAGVDPTRR

A0A6J1D5L1 uncharacterized protein LOC111017496 isoform X21.1e-4990.27Show/hide
Query:  SSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTRPR
        SSKSEYMKGEYAPIYIVMGMV VA++IGTHTAKQQLLHSPVV L+KKKRESIPEV+DPDTVITSADKF+NKSFLRKVAHIQD+ KTL DP HPDPFTRPR
Subjt:  SSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTRPR

Query:  NAETLKTAGVDPT
        NAETLKTAGVDPT
Subjt:  NAETLKTAGVDPT

E5GB52 Uncharacterized protein1.6e-5190.6Show/hide
Query:  GGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTR
        GGS  SEYMKGEYAPIYIVMGMVAV +SI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQD+ KTLPDPVH DPFTR
Subjt:  GGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTR

Query:  PRNAETLKTAGVDPTRR
        PRNAETLKTAGVDPTRR
Subjt:  PRNAETLKTAGVDPTRR

SwissProt top hitse value%identityAlignment
O64650 40S ribosomal protein S27-17.6e-1997.78Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNM
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFN+
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNM

P47903 40S ribosomal protein S272.7e-1688.89Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNM
        MVL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFN+
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNM

Q8L953 40S ribosomal protein S27-31.1e-1793.33Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNM
        MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFN+
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNM

Q96564 40S ribosomal protein S272.5e-1793.33Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNM
        MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFN+
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNM

Q9M2F1 40S ribosomal protein S27-27.6e-1997.78Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNM
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFN+
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNM

Arabidopsis top hitse value%identityAlignment
AT1G63060.1 unknown protein1.7e-2652.38Show/hide
Query:  GEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDNPKT-LPDPVHPDPFTRPRNAETLKT
        GE+AP+ I+ G V +A+ +  H+ KQQL+H+P ++  K +R ++ EV+DP+  ++SADKFINKS+LRKV  IQD  K  L DP  P+PFT PRNAETL +
Subjt:  GEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDNPKT-LPDPVHPDPFTRPRNAETLKT

Query:  AGVDP
         GV P
Subjt:  AGVDP

AT2G45710.1 Zinc-binding ribosomal protein family protein5.4e-2097.78Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNM
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFN+
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNM

AT3G61110.1 ribosomal protein S275.4e-2097.78Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNM
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFN+
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNM

AT5G07330.1 unknown protein1.2e-2242.99Show/hide
Query:  KGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQ--DNPKTLPDPVHPDPFTRPRNAETL
        KG++ P+Y+ +G+++++++ G +TA   L  +P V +NKK RE++PE+EDPD V+  AD+F N+S+ RK+AH+Q  D    + DP+  D F     A TL
Subjt:  KGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQ--DNPKTLPDPVHPDPFTRPRNAETL

Query:  KTAGVDP
        K  GVDP
Subjt:  KTAGVDP

AT5G47930.1 Zinc-binding ribosomal protein family protein7.8e-1993.33Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNM
        MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFN+
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCTTCAAAACGATATCGATTTGCTCAATCCTCCGGCTGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGACGT
GAAGTGCCAAGGTTGCTTTAACATGGGCGGTTCTAGTAAGAGCGAGTACATGAAAGGCGAGTACGCCCCAATCTACATTGTGATGGGGATGGTGGCGGTGGCTTTGTCCA
TCGGAACCCACACCGCGAAGCAGCAGCTGTTGCATTCGCCGGTGGTTAACCTGAACAAGAAGAAGAGGGAGAGCATTCCAGAGGTGGAGGATCCCGACACCGTCATTACT
TCCGCCGACAAATTTATCAACAAATCCTTTCTTAGGAAGGTCGCTCACATCCAGGACAACCCCAAGACGCTACCGGATCCCGTTCACCCCGACCCATTTACCCGGCCACG
TAATGCGGAAACTCTGAAAACGGCTGGAGTGGATCCTACCCGACGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCTTCAAAACGATATCGATTTGCTCAATCCTCCGGCTGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAGTCGCCCAACTCATTCTTCATGGACGT
GAAGTGCCAAGGTTGCTTTAACATGGGCGGTTCTAGTAAGAGCGAGTACATGAAAGGCGAGTACGCCCCAATCTACATTGTGATGGGGATGGTGGCGGTGGCTTTGTCCA
TCGGAACCCACACCGCGAAGCAGCAGCTGTTGCATTCGCCGGTGGTTAACCTGAACAAGAAGAAGAGGGAGAGCATTCCAGAGGTGGAGGATCCCGACACCGTCATTACT
TCCGCCGACAAATTTATCAACAAATCCTTTCTTAGGAAGGTCGCTCACATCCAGGACAACCCCAAGACGCTACCGGATCCCGTTCACCCCGACCCATTTACCCGGCCACG
TAATGCGGAAACTCTGAAAACGGCTGGAGTGGATCCTACCCGACGTTGA
Protein sequenceShow/hide protein sequence
MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNMGGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVIT
SADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR