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HG10010745 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10010745
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionTPR_REGION domain-containing protein
Genome locationChr06:25452879..25453482
RNA-Seq ExpressionHG10010745
SyntenyHG10010745
Gene Ontology termsGO:0006396 - RNA processing (biological process)
GO:0009833 - plant-type primary cell wall biogenesis (biological process)
GO:0030244 - cellulose biosynthetic process (biological process)
GO:0071555 - cell wall organization (biological process)
GO:0005886 - plasma membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005515 - protein binding (molecular function)
GO:0016760 - cellulose synthase (UDP-forming) activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039891.1 TPR_11 domain-containing protein [Cucumis melo var. makuwa]6.2e-3292.31Show/hide
Query:  MDSQDGEILSKYAKLVWELHHDQQKALSYFQRALQASPHDSHVQAAYANFLWETEEDEDEHSLGKEMATQTYTAAATA
        MDSQDGEILSKYAKLVWELHHDQQKA+SYFQRALQASPHDSHVQAAYANFLWETEE+EDE S+GKE AT+TYTAAATA
Subjt:  MDSQDGEILSKYAKLVWELHHDQQKALSYFQRALQASPHDSHVQAAYANFLWETEEDEDEHSLGKEMATQTYTAAATA

KGN46380.2 hypothetical protein Csa_005429 [Cucumis sativus]6.4e-2989.74Show/hide
Query:  MDSQDGEILSKYAKLVWELHHDQQKALSYFQRALQASPHDSHVQAAYANFLWETEEDEDEHSLGKEMATQTYTAAATA
        MDS DGE LSKYAKLVWELHHDQQKALSYFQRALQASP DSHVQAAYANFLWETEE+EDE SL KE AT+TYTAAATA
Subjt:  MDSQDGEILSKYAKLVWELHHDQQKALSYFQRALQASPHDSHVQAAYANFLWETEEDEDEHSLGKEMATQTYTAAATA

XP_004140576.2 uncharacterized protein LOC101206684 [Cucumis sativus]6.4e-2989.74Show/hide
Query:  MDSQDGEILSKYAKLVWELHHDQQKALSYFQRALQASPHDSHVQAAYANFLWETEEDEDEHSLGKEMATQTYTAAATA
        MDS DGE LSKYAKLVWELHHDQQKALSYFQRALQASP DSHVQAAYANFLWETEE+EDE SL KE AT+TYTAAATA
Subjt:  MDSQDGEILSKYAKLVWELHHDQQKALSYFQRALQASPHDSHVQAAYANFLWETEEDEDEHSLGKEMATQTYTAAATA

XP_008459965.1 PREDICTED: uncharacterized protein LOC103498923 [Cucumis melo]6.2e-3292.31Show/hide
Query:  MDSQDGEILSKYAKLVWELHHDQQKALSYFQRALQASPHDSHVQAAYANFLWETEEDEDEHSLGKEMATQTYTAAATA
        MDSQDGEILSKYAKLVWELHHDQQKA+SYFQRALQASPHDSHVQAAYANFLWETEE+EDE S+GKE AT+TYTAAATA
Subjt:  MDSQDGEILSKYAKLVWELHHDQQKALSYFQRALQASPHDSHVQAAYANFLWETEEDEDEHSLGKEMATQTYTAAATA

XP_038874350.1 uncharacterized protein LOC120067050 isoform X1 [Benincasa hispida]1.6e-3293.59Show/hide
Query:  MDSQDGEILSKYAKLVWELHHDQQKALSYFQRALQASPHDSHVQAAYANFLWETEEDEDEHSLGKEMATQTYTAAATA
        MD+QDGEILSKYAKLVWELHHDQQKAL+YFQRALQASPHDS+VQAAYANFLWETEEDEDEHSLGK MATQTYTAAAT+
Subjt:  MDSQDGEILSKYAKLVWELHHDQQKALSYFQRALQASPHDSHVQAAYANFLWETEEDEDEHSLGKEMATQTYTAAATA

TrEMBL top hitse value%identityAlignment
A0A1S3CCM7 uncharacterized protein LOC1034989233.0e-3292.31Show/hide
Query:  MDSQDGEILSKYAKLVWELHHDQQKALSYFQRALQASPHDSHVQAAYANFLWETEEDEDEHSLGKEMATQTYTAAATA
        MDSQDGEILSKYAKLVWELHHDQQKA+SYFQRALQASPHDSHVQAAYANFLWETEE+EDE S+GKE AT+TYTAAATA
Subjt:  MDSQDGEILSKYAKLVWELHHDQQKALSYFQRALQASPHDSHVQAAYANFLWETEEDEDEHSLGKEMATQTYTAAATA

A0A4S4DAV9 TPR_REGION domain-containing protein7.7e-2071.64Show/hide
Query:  DSQDGEILSKYAKLVWELHHDQQKALSYFQRALQASPHDSHVQAAYANFLWETEEDEDEHSLGKEMA
        DS+DGE+LS+YAKLVWELHHD  +ALSYF+RA+QA+P DSHVQAAYANFLWETEED+DE     +++
Subjt:  DSQDGEILSKYAKLVWELHHDQQKALSYFQRALQASPHDSHVQAAYANFLWETEEDEDEHSLGKEMA

A0A5A7TE10 TPR_11 domain-containing protein3.0e-3292.31Show/hide
Query:  MDSQDGEILSKYAKLVWELHHDQQKALSYFQRALQASPHDSHVQAAYANFLWETEEDEDEHSLGKEMATQTYTAAATA
        MDSQDGEILSKYAKLVWELHHDQQKA+SYFQRALQASPHDSHVQAAYANFLWETEE+EDE S+GKE AT+TYTAAATA
Subjt:  MDSQDGEILSKYAKLVWELHHDQQKALSYFQRALQASPHDSHVQAAYANFLWETEEDEDEHSLGKEMATQTYTAAATA

A0A6J1GSL1 uncharacterized protein LOC1114565933.6e-2588.57Show/hide
Query:  SQDGEILSKYAKLVWELHHDQQKALSYFQRALQASPHDSHVQAAYANFLWETEEDEDEHSLGKEMATQTY
        SQDGEILSKYAKLVWELH DQQKA SYFQRALQASPHDSHVQAAYANFLWETEE ED  SLGKEMAT  +
Subjt:  SQDGEILSKYAKLVWELHHDQQKALSYFQRALQASPHDSHVQAAYANFLWETEEDEDEHSLGKEMATQTY

A0A6J1JW55 uncharacterized protein LOC1114880524.6e-2588.57Show/hide
Query:  SQDGEILSKYAKLVWELHHDQQKALSYFQRALQASPHDSHVQAAYANFLWETEEDEDEHSLGKEMATQTY
        SQDGEILSKYAKLVWELH DQQKA SYFQRALQASPHDSHVQAAYANFLWETEE ED  SLGKEMAT  +
Subjt:  SQDGEILSKYAKLVWELHHDQQKALSYFQRALQASPHDSHVQAAYANFLWETEEDEDEHSLGKEMATQTY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G04530.1 Tetratricopeptide repeat (TPR)-like superfamily protein6.9e-1355Show/hide
Query:  MDSQDGEILSKYAKLVWELHHDQQKALSYFQRALQASPHDSHVQAAYANFLWETEEDEDE
        ++  DG  L+ Y +LV +LH D+ KA+SYF+RA+QASP DS V AAYA+FLWE   D+D+
Subjt:  MDSQDGEILSKYAKLVWELHHDQQKALSYFQRALQASPHDSHVQAAYANFLWETEEDEDE

AT1G80130.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.4e-1347.69Show/hide
Query:  DSQDGEILSKYAKLVWELHHDQQKALSYFQRALQASPHDSHVQAAYANFLWETEEDEDEHSLGKE
        ++ DG +LS YA L+   H D+Q+A SY+++A++ SP D +VQA+YA FLW+ +EDE++ +LG+E
Subjt:  DSQDGEILSKYAKLVWELHHDQQKALSYFQRALQASPHDSHVQAAYANFLWETEEDEDEHSLGKE

AT4G17940.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.9e-1148.21Show/hide
Query:  DGEILSKYAKLVWELHHDQQKALSYFQRALQASPHDSHVQAAYANFLWETEEDEDE
        DGE LS Y +L+WE   D+++A  YF +A+ ASP+D  V  +YA F+WE E+D+D+
Subjt:  DGEILSKYAKLVWELHHDQQKALSYFQRALQASPHDSHVQAAYANFLWETEEDEDE

AT4G32340.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.1e-1049.12Show/hide
Query:  QDGEILSKYAKLVWELHHDQQKALSYFQRALQASPHDSHVQAAYANFLWETEEDEDE
        +DGE+LS Y  L+W+ H D  +A SY+ +A+Q+SP D +V A+YA FLW+ EE+ +E
Subjt:  QDGEILSKYAKLVWELHHDQQKALSYFQRALQASPHDSHVQAAYANFLWETEEDEDE

AT5G20190.1 Tetratricopeptide repeat (TPR)-like superfamily protein6.9e-1351.79Show/hide
Query:  DGEILSKYAKLVWELHHDQQKALSYFQRALQASPHDSHVQAAYANFLWETEEDEDE
        DG +L+ YA+LVW++H D  +A +YF +A+ A+P D +VQA+YA FLW+ EE+E+E
Subjt:  DGEILSKYAKLVWELHHDQQKALSYFQRALQASPHDSHVQAAYANFLWETEEDEDE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCCCAAGATGGAGAAATTTTGTCAAAATATGCTAAGTTAGTGTGGGAGTTGCATCATGACCAACAAAAAGCTTTATCATATTTCCAACGGGCTCTCCAAGCTTC
CCCACATGACAGCCACGTGCAAGCAGCCTATGCCAATTTCCTGTGGGAAACAGAAGAGGATGAAGATGAACACAGCTTAGGAAAAGAGATGGCAACACAGACTTACACGG
CAGCTGCAACTGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTCCCAAGATGGAGAAATTTTGTCAAAATATGCTAAGTTAGTGTGGGAGTTGCATCATGACCAACAAAAAGCTTTATCATATTTCCAACGGGCTCTCCAAGCTTC
CCCACATGACAGCCACGTGCAAGCAGCCTATGCCAATTTCCTGTGGGAAACAGAAGAGGATGAAGATGAACACAGCTTAGGAAAAGAGATGGCAACACAGACTTACACGG
CAGCTGCAACTGCTTGA
Protein sequenceShow/hide protein sequence
MDSQDGEILSKYAKLVWELHHDQQKALSYFQRALQASPHDSHVQAAYANFLWETEEDEDEHSLGKEMATQTYTAAATA