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HG10010780 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10010780
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionTrigger_N domain-containing protein
Genome locationChr06:25828625..25830053
RNA-Seq ExpressionHG10010780
SyntenyHG10010780
Gene Ontology termsGO:0000413 - protein peptidyl-prolyl isomerization (biological process)
GO:0015031 - protein transport (biological process)
GO:0043335 - protein unfolding (biological process)
GO:0051083 - 'de novo' cotranslational protein folding (biological process)
GO:0061077 - chaperone-mediated protein folding (biological process)
GO:0016020 - membrane (cellular component)
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity (molecular function)
GO:0043022 - ribosome binding (molecular function)
GO:0044183 - protein folding chaperone (molecular function)
InterPro domainsIPR005215 - Trigger factor
IPR036611 - Trigger factor ribosome-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008460020.1 PREDICTED: uncharacterized protein LOC103498959 [Cucumis melo]6.5e-3279Show/hide
Query:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPNAYVENISVKDKKVNTTQTADELKVLFNPGKDFGFNAILELESGSDAEN
        GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKK                ENI+VKD KVNTTQTADELKVLFNPGK+FGFNAILELES SDAE+
Subjt:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPNAYVENISVKDKKVNTTQTADELKVLFNPGKDFGFNAILELESGSDAEN

XP_011656737.1 uncharacterized protein LOC101212225 [Cucumis sativus]2.5e-3177Show/hide
Query:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPNAYVENISVKDKKVNTTQTADELKVLFNPGKDFGFNAILELESGSDAEN
        GKTSNVPKSFLLEVLGKDRVTKF+IQEILNSTM DYAKK                ENI+VKDKKV+TTQTADELKVLFNPGK+FGFNAILELES SDAE+
Subjt:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPNAYVENISVKDKKVNTTQTADELKVLFNPGKDFGFNAILELESGSDAEN

XP_022155406.1 uncharacterized protein LOC111022553 [Momordica charantia]2.6e-2871.72Show/hide
Query:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPNAYVENISVKDKKVNTTQTADELKVLFNPGKDFGFNAILELESGSDAE
        GKTSNVPKSFLLEVLG++RVTKFVIQEILNSTMADYAKK                EN++VKDKKVNTTQTADELK+LF PGK+FGFNAILELES +  +
Subjt:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPNAYVENISVKDKKVNTTQTADELKVLFNPGKDFGFNAILELESGSDAE

XP_023004174.1 uncharacterized protein LOC111497577 [Cucurbita maxima]7.5e-2871.7Show/hide
Query:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPNAYVENISVKDKKVNTTQTADELKVLFNPGKDFGFNAILELE------S
        GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKK                ENI VKDK VNTTQT DELKVLF PGK+FGFNAILELE      S
Subjt:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPNAYVENISVKDKKVNTTQTADELKVLFNPGKDFGFNAILELE------S

Query:  GSDAEN
         S+ EN
Subjt:  GSDAEN

XP_038906537.1 uncharacterized protein LOC120092511 [Benincasa hispida]8.5e-3279Show/hide
Query:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPNAYVENISVKDKKVNTTQTADELKVLFNPGKDFGFNAILELESGSDAEN
        GKTSNVPKSFLLEVLGKDRV KFVIQEILNSTMADYAKK                ENI+VKDKKVNTTQTADELKVLF+PGK+FGFNAILELES SDAEN
Subjt:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPNAYVENISVKDKKVNTTQTADELKVLFNPGKDFGFNAILELESGSDAEN

TrEMBL top hitse value%identityAlignment
A0A0A0K988 Trigger_N domain-containing protein1.2e-3177Show/hide
Query:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPNAYVENISVKDKKVNTTQTADELKVLFNPGKDFGFNAILELESGSDAEN
        GKTSNVPKSFLLEVLGKDRVTKF+IQEILNSTM DYAKK                ENI+VKDKKV+TTQTADELKVLFNPGK+FGFNAILELES SDAE+
Subjt:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPNAYVENISVKDKKVNTTQTADELKVLFNPGKDFGFNAILELESGSDAEN

A0A1S3CBN2 uncharacterized protein LOC1034989593.2e-3279Show/hide
Query:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPNAYVENISVKDKKVNTTQTADELKVLFNPGKDFGFNAILELESGSDAEN
        GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKK                ENI+VKD KVNTTQTADELKVLFNPGK+FGFNAILELES SDAE+
Subjt:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPNAYVENISVKDKKVNTTQTADELKVLFNPGKDFGFNAILELESGSDAEN

A0A6J1DRL2 uncharacterized protein LOC1110225531.2e-2871.72Show/hide
Query:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPNAYVENISVKDKKVNTTQTADELKVLFNPGKDFGFNAILELESGSDAE
        GKTSNVPKSFLLEVLG++RVTKFVIQEILNSTMADYAKK                EN++VKDKKVNTTQTADELK+LF PGK+FGFNAILELES +  +
Subjt:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPNAYVENISVKDKKVNTTQTADELKVLFNPGKDFGFNAILELESGSDAE

A0A6J1H8V8 uncharacterized protein LOC1114611153.1e-2768.52Show/hide
Query:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPNAYVENISVKDKKVNTTQTADELKVLFNPGKDFGFNAIL--------EL
        GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTM DYAKK                ENI VKDK VNTTQT DELK LF PGK+FGFNAIL        EL
Subjt:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPNAYVENISVKDKKVNTTQTADELKVLFNPGKDFGFNAIL--------EL

Query:  ESGSDAEN
        ES S+ EN
Subjt:  ESGSDAEN

A0A6J1KVH6 uncharacterized protein LOC1114975773.6e-2871.7Show/hide
Query:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPNAYVENISVKDKKVNTTQTADELKVLFNPGKDFGFNAILELE------S
        GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKK                ENI VKDK VNTTQT DELKVLF PGK+FGFNAILELE      S
Subjt:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPNAYVENISVKDKKVNTTQTADELKVLFNPGKDFGFNAILELE------S

Query:  GSDAEN
         S+ EN
Subjt:  GSDAEN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G30695.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 253 Blast hits to 253 proteins in 72 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).4.4e-1034.38Show/hide
Query:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPNAYVENISVKDKKVNTTQTADELKVLFNPGKDFGFNAILELESGS
        GKT N+PK  LLE+LG  +V K VI++++NS + DY K+                E++ V  K++   Q+ ++L+  F PG+ F F+A ++L+  S
Subjt:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPNAYVENISVKDKKVNTTQTADELKVLFNPGKDFGFNAILELESGS

AT2G30695.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).4.4e-1034.38Show/hide
Query:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPNAYVENISVKDKKVNTTQTADELKVLFNPGKDFGFNAILELESGS
        GKT N+PK  LLE+LG  +V K VI++++NS + DY K+                E++ V  K++   Q+ ++L+  F PG+ F F+A ++L+  S
Subjt:  GKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPNAYVENISVKDKKVNTTQTADELKVLFNPGKDFGFNAILELESGS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTGTTGATGCTTTGCCAGGGAAAACATCAAATGTCCCAAAAAGCTTCCTCTTAGAAGTCCTTGGTAAGGACCGAGTCACAAAGTTTGTCATACAAGAAATATTGAA
CTCAACTATGGCAGATTATGCAAAGAAGGCAAGTTTTATCCTCATTGCTTTGCTTCTTATACCTAATGCCTATGTGGAAAATATAAGTGTGAAGGACAAGAAGGTTAACA
CCACACAAACAGCAGATGAACTGAAAGTGTTGTTTAATCCAGGAAAAGATTTTGGTTTCAATGCCATACTTGAACTTGAATCTGGTTCAGATGCTGAAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTGTTGATGCTTTGCCAGGGAAAACATCAAATGTCCCAAAAAGCTTCCTCTTAGAAGTCCTTGGTAAGGACCGAGTCACAAAGTTTGTCATACAAGAAATATTGAA
CTCAACTATGGCAGATTATGCAAAGAAGGCAAGTTTTATCCTCATTGCTTTGCTTCTTATACCTAATGCCTATGTGGAAAATATAAGTGTGAAGGACAAGAAGGTTAACA
CCACACAAACAGCAGATGAACTGAAAGTGTTGTTTAATCCAGGAAAAGATTTTGGTTTCAATGCCATACTTGAACTTGAATCTGGTTCAGATGCTGAAAATTGA
Protein sequenceShow/hide protein sequence
MPVDALPGKTSNVPKSFLLEVLGKDRVTKFVIQEILNSTMADYAKKASFILIALLLIPNAYVENISVKDKKVNTTQTADELKVLFNPGKDFGFNAILELESGSDAEN