; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10010830 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10010830
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionupstream activation factor subunit spp27-like
Genome locationChr06:26309557..26311084
RNA-Seq ExpressionHG10010830
SyntenyHG10010830
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR019835 - SWIB domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593744.1 hypothetical protein SDJN03_13220, partial [Cucurbita argyrosperma subsp. sororia]4.7e-5782.19Show/hide
Query:  MASGLSNGTRFFRGCRTLLDSLKSTTQAYSSTPAVSPKGKLKASGAAVSGQKSVAGPKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIK
        MASGL+NGTR FRGCRTLLDSLKSTTQAYSS  AVSPKG++KASGAA S +KS AG KKE NRS GI K  QVSPALA FLGMSE+SR+EA+KQIW++IK
Subjt:  MASGLSNGTRFFRGCRTLLDSLKSTTQAYSSTPAVSPKGKLKASGAAVSGQKSVAGPKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIK

Query:  LNNLQSPADKRQIICDEKLKAIFDGRERVGFLEIGKLLSPHFVKSS
        LNNLQ+PA+KRQI CDEKLKAIFDGRE VGFLEIGKLLSPHFVKSS
Subjt:  LNNLQSPADKRQIICDEKLKAIFDGRERVGFLEIGKLLSPHFVKSS

KAG6593745.1 hypothetical protein SDJN03_13221, partial [Cucurbita argyrosperma subsp. sororia]2.3e-5682.19Show/hide
Query:  MASGLSNGTRFFRGCRTLLDSLKSTTQAYSSTPAVSPKGKLKASGAAVSGQKSVAGPKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIK
        MASGL+NGTR FRGCRTLLDSLKSTTQAYSS  AVSPKG+LKASGAA S +KS AG KKE NRS GI K  QVSPALA FLGMSE+SR EA+KQIW++IK
Subjt:  MASGLSNGTRFFRGCRTLLDSLKSTTQAYSSTPAVSPKGKLKASGAAVSGQKSVAGPKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIK

Query:  LNNLQSPADKRQIICDEKLKAIFDGRERVGFLEIGKLLSPHFVKSS
        LNNLQ+PA+KRQI CDEKLKAIFDGRE VG LEIGKLLSPHFVKSS
Subjt:  LNNLQSPADKRQIICDEKLKAIFDGRERVGFLEIGKLLSPHFVKSS

XP_023000110.1 upstream activation factor subunit spp27-like [Cucurbita maxima]4.7e-5782.88Show/hide
Query:  MASGLSNGTRFFRGCRTLLDSLKSTTQAYSSTPAVSPKGKLKASGAAVSGQKSVAGPKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIK
        MASGL+NGTR FRGCRTLLDSLKSTTQAYSS  AVSPKG+LKASGAA S +KS AG KKE NRS GIFK  QVSPALA FLGMSE+SRSEA+KQIW++IK
Subjt:  MASGLSNGTRFFRGCRTLLDSLKSTTQAYSSTPAVSPKGKLKASGAAVSGQKSVAGPKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIK

Query:  LNNLQSPADKRQIICDEKLKAIFDGRERVGFLEIGKLLSPHFVKSS
        LN+LQ+PA+KRQI CDEKLKAIFDGRE VG LEIGKLLSPHFVKSS
Subjt:  LNNLQSPADKRQIICDEKLKAIFDGRERVGFLEIGKLLSPHFVKSS

XP_023000111.1 upstream activation factor subunit spp27-like [Cucurbita maxima]1.0e-5682.19Show/hide
Query:  MASGLSNGTRFFRGCRTLLDSLKSTTQAYSSTPAVSPKGKLKASGAAVSGQKSVAGPKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIK
        MASGL+NGTR FRGCRTLLDSLKSTTQAYSS  AVSPKG+LKASGAA + +KS AG KKE NRS GIFK  QVSPALA FLGMSE+SRSEA+KQIW++IK
Subjt:  MASGLSNGTRFFRGCRTLLDSLKSTTQAYSSTPAVSPKGKLKASGAAVSGQKSVAGPKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIK

Query:  LNNLQSPADKRQIICDEKLKAIFDGRERVGFLEIGKLLSPHFVKSS
        LN+LQ+PA+KRQI CDEKLKAIFDGRE VG LEIGKLLSPHFVKSS
Subjt:  LNNLQSPADKRQIICDEKLKAIFDGRERVGFLEIGKLLSPHFVKSS

XP_038906873.1 upstream activation factor subunit spp27-like [Benincasa hispida]7.0e-6188.36Show/hide
Query:  MASGLSNGTRFFRGCRTLLDSLKSTTQAYSSTPAVSPKGKLKASGAAVSGQKSVAGPKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIK
        MASG  NGTRFFRGCRTL DSLKSTTQAYSSTPAVS KGKLKAS  AVSGQKSVAGPKK  NRS+GIFK F VSPALA FLGMSETSRSEA+KQIWA+IK
Subjt:  MASGLSNGTRFFRGCRTLLDSLKSTTQAYSSTPAVSPKGKLKASGAAVSGQKSVAGPKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIK

Query:  LNNLQSPADKRQIICDEKLKAIFDGRERVGFLEIGKLLSPHFVKSS
        LNNLQSPADKRQI CDEKLKAIFDGRE+VGFLEIGKLL+PHFVKSS
Subjt:  LNNLQSPADKRQIICDEKLKAIFDGRERVGFLEIGKLLSPHFVKSS

TrEMBL top hitse value%identityAlignment
A0A0A0KCY9 SWIB domain-containing protein3.0e-4974.48Show/hide
Query:  MASGLSNGTRFFRGCRTLLDSLKSTTQAYSSTPAVSPKGKLKASGAAVSGQKSVAGPKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIK
        MASGLSNGTRFF+GCRTLLDSLKSTTQAYSSTP VS K  LK S AAVSGQKS   PKK  N S G+ K  +VSP LA FLG SE +R+EA+KQIW +IK
Subjt:  MASGLSNGTRFFRGCRTLLDSLKSTTQAYSSTPAVSPKGKLKASGAAVSGQKSVAGPKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIK

Query:  LNNLQSPADKRQIICDEKLKAIFDGRERVGFLEIGKLLSPHFVKS
        LNNLQ+P DKRQIICD KLKAIF GRE+VG LEI K LS HFVKS
Subjt:  LNNLQSPADKRQIICDEKLKAIFDGRERVGFLEIGKLLSPHFVKS

A0A1S3CBA0 protein TRI1-like9.2e-5174.48Show/hide
Query:  MASGLSNGTRFFRGCRTLLDSLKSTTQAYSSTPAVSPKGKLKASGAAVSGQKSVAGPKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIK
        MASGLSNGTRFFRGC+TLLDSLK TTQAYSSTPAVS K KLK   AAVSGQKS A PK++ N S GI K  +VSP LA FLG SE SR++A+KQIW++IK
Subjt:  MASGLSNGTRFFRGCRTLLDSLKSTTQAYSSTPAVSPKGKLKASGAAVSGQKSVAGPKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIK

Query:  LNNLQSPADKRQIICDEKLKAIFDGRERVGFLEIGKLLSPHFVKS
        LNNLQ+  DKRQI CD KLKAIF GRE+VG LEI K LSPHFVKS
Subjt:  LNNLQSPADKRQIICDEKLKAIFDGRERVGFLEIGKLLSPHFVKS

A0A5D3DMJ2 Protein TRI1-like9.2e-5174.48Show/hide
Query:  MASGLSNGTRFFRGCRTLLDSLKSTTQAYSSTPAVSPKGKLKASGAAVSGQKSVAGPKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIK
        MASGLSNGTRFFRGC+TLLDSLK TTQAYSSTPAVS K KLK   AAVSGQKS A PK++ N S GI K  +VSP LA FLG SE SR++A+KQIW++IK
Subjt:  MASGLSNGTRFFRGCRTLLDSLKSTTQAYSSTPAVSPKGKLKASGAAVSGQKSVAGPKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIK

Query:  LNNLQSPADKRQIICDEKLKAIFDGRERVGFLEIGKLLSPHFVKS
        LNNLQ+  DKRQI CD KLKAIF GRE+VG LEI K LSPHFVKS
Subjt:  LNNLQSPADKRQIICDEKLKAIFDGRERVGFLEIGKLLSPHFVKS

A0A6J1KEZ2 upstream activation factor subunit spp27-like5.0e-5782.19Show/hide
Query:  MASGLSNGTRFFRGCRTLLDSLKSTTQAYSSTPAVSPKGKLKASGAAVSGQKSVAGPKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIK
        MASGL+NGTR FRGCRTLLDSLKSTTQAYSS  AVSPKG+LKASGAA + +KS AG KKE NRS GIFK  QVSPALA FLGMSE+SRSEA+KQIW++IK
Subjt:  MASGLSNGTRFFRGCRTLLDSLKSTTQAYSSTPAVSPKGKLKASGAAVSGQKSVAGPKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIK

Query:  LNNLQSPADKRQIICDEKLKAIFDGRERVGFLEIGKLLSPHFVKSS
        LN+LQ+PA+KRQI CDEKLKAIFDGRE VG LEIGKLLSPHFVKSS
Subjt:  LNNLQSPADKRQIICDEKLKAIFDGRERVGFLEIGKLLSPHFVKSS

A0A6J1KHF5 upstream activation factor subunit spp27-like2.3e-5782.88Show/hide
Query:  MASGLSNGTRFFRGCRTLLDSLKSTTQAYSSTPAVSPKGKLKASGAAVSGQKSVAGPKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIK
        MASGL+NGTR FRGCRTLLDSLKSTTQAYSS  AVSPKG+LKASGAA S +KS AG KKE NRS GIFK  QVSPALA FLGMSE+SRSEA+KQIW++IK
Subjt:  MASGLSNGTRFFRGCRTLLDSLKSTTQAYSSTPAVSPKGKLKASGAAVSGQKSVAGPKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIK

Query:  LNNLQSPADKRQIICDEKLKAIFDGRERVGFLEIGKLLSPHFVKSS
        LN+LQ+PA+KRQI CDEKLKAIFDGRE VG LEIGKLLSPHFVKSS
Subjt:  LNNLQSPADKRQIICDEKLKAIFDGRERVGFLEIGKLLSPHFVKSS

SwissProt top hitse value%identityAlignment
O74503 Upstream activation factor subunit spp276.9e-1135.29Show/hide
Query:  TQAYSSTPAVSPKGKLKASGAAVSGQKSVAGPKKEPNR---SSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIKLNNLQSPADKRQIICDEKLKAI
        T+   +T   + +GK  A       +    G K++ N+   ++ + KP ++SP LA FLG+ + SR + +K++W +IK ++LQ P DKR I+CD+KLK++
Subjt:  TQAYSSTPAVSPKGKLKASGAAVSGQKSVAGPKKEPNR---SSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIKLNNLQSPADKRQIICDEKLKAI

Query:  FD
        F+
Subjt:  FD

Q05024 Protein TRI14.9e-0934Show/hide
Query:  KASGAAVSGQKSVAGPKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIKLNNLQSPADKRQIICDEKLKAIFDGRERVGFLEIGKLLSPH
        K  G + S  K        P+ +S   +   +S  L  FLG  E  R++ +K IW +IK ++LQ+P D+R+I+CDEK++ IF   +++    + KLL+ H
Subjt:  KASGAAVSGQKSVAGPKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIKLNNLQSPADKRQIICDEKLKAIFDGRERVGFLEIGKLLSPH

Q08747 Upstream activation factor subunit UAF303.2e-0832.58Show/hide
Query:  RTLLDSLK-STTQAYSSTPAVSPKGKLKASGAAVSGQKSVAGPKKEPNRSSGIFKPFQV--SPALASFLGMSETSRSEALKQIWAHIKLNNLQSPADKRQ
        R+L D LK + T A   T  ++   +        S  K     KK+   S       +V  S +LAS LG  E +R+E ++++WA+IK +NLQ+P +K++
Subjt:  RTLLDSLK-STTQAYSSTPAVSPKGKLKASGAAVSGQKSVAGPKKEPNRSSGIFKPFQV--SPALASFLGMSETSRSEALKQIWAHIKLNNLQSPADKRQ

Query:  IICDEKLKAIFDGRERVGFLEIGKLLSPHFVK
        I+CDEKL+ I    +     E+ K+L+ H  +
Subjt:  IICDEKLKAIFDGRERVGFLEIGKLLSPHFVK

Q9P7S3 SWI/SNF and RSC complexes subunit ssr34.3e-0531.33Show/hide
Query:  PKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIKLNNLQSPADKRQIICDEKLKAIFDGRERVGFLEIGKLLS
        P++ P R       +++S A A+ LG+ E +R + +  +W +IK + LQ   +KR I CD+ L+ +F+  +R+ F  I +L++
Subjt:  PKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIKLNNLQSPADKRQIICDEKLKAIFDGRERVGFLEIGKLLS

Arabidopsis top hitse value%identityAlignment
AT1G31760.1 SWIB/MDM2 domain superfamily protein6.8e-2253.92Show/hide
Query:  SGAAVSGQKSVAGPKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIKLNNLQSPADKRQIICDEKLKAIFDGRERVGFLEIGKLLSPHFV
        S AA     +VAG  K      GIFK   VS  LASF G  E +R  ALK++W ++KL+NLQ+PA+K++I CD+KLK IFDG+++VG  EI KLLSPHF 
Subjt:  SGAAVSGQKSVAGPKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIKLNNLQSPADKRQIICDEKLKAIFDGRERVGFLEIGKLLSPHFV

Query:  KS
        KS
Subjt:  KS

AT2G14880.1 SWIB/MDM2 domain superfamily protein2.3e-2244.53Show/hide
Query:  LKSTTQAYSSTP------AVSPKGKLKASGAAVSGQKSVAGPKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIKLNNLQSPADKRQIIC
        +K+T+    STP      A  P  KL+   A  S  +S            GI KP  VSP +   + + E +R++ALK+IWA+IK ++LQ P +KR+I+C
Subjt:  LKSTTQAYSSTP------AVSPKGKLKASGAAVSGQKSVAGPKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIKLNNLQSPADKRQIIC

Query:  DEKLKAIFDGRERVGFLEIGKLLSPHFV
        DEKLK IF+GR+RVGFLEI KL+ PHF+
Subjt:  DEKLKAIFDGRERVGFLEIGKLLSPHFV

AT2G35605.1 SWIB/MDM2 domain superfamily protein2.1e-2356.82Show/hide
Query:  KEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIKLNNLQSPADKRQIICDEKLKAIFDGRERVGFLEIGKLLSPHFVKSS
        K   + +GI K   VS  LA+F+G +E SR+ A+K+IW +IKLNNLQ+P +KR+I+CDE+LK IF G++ VGFLEI KLLS HF KS+
Subjt:  KEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIKLNNLQSPADKRQIICDEKLKAIFDGRERVGFLEIGKLLSPHFVKSS

AT3G03590.1 SWIB/MDM2 domain superfamily protein1.0e-3052.14Show/hide
Query:  FRGCRTLLDSLKSTTQAYSST-----PAVSPKGKLKASGAAVSGQKSVAGPKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIKLNNLQS
        FRG R+LL      T +  S      PA  PK K K    A S       P K+  RS+GIFK   VSP LA FLG  ETSR++A+K IW +IK ++LQ+
Subjt:  FRGCRTLLDSLKSTTQAYSST-----PAVSPKGKLKASGAAVSGQKSVAGPKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIKLNNLQS

Query:  PADKRQIICDEKLKAIFDGRERVGFLEIGKLLSPHFVKSS
        PADKR+I CDE LK IF+G+++VGFLEI KLLSPHFVK++
Subjt:  PADKRQIICDEKLKAIFDGRERVGFLEIGKLLSPHFVKSS

AT4G34290.1 SWIB/MDM2 domain superfamily protein1.8e-2252Show/hide
Query:  SGAAVSGQKSVAGPKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIKLNNLQSPADKRQIICDEKLKAIFDGRERVGFLEIGKLLSPHFV
        S AA S   +     +EP    GI KP  VS A+   +G+ E  R++ALK+IWA+IK ++LQ P +KR I+CDEKLK IF+G+ERVGFLEI KL+ PHF+
Subjt:  SGAAVSGQKSVAGPKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIKLNNLQSPADKRQIICDEKLKAIFDGRERVGFLEIGKLLSPHFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCAGGTCTTAGCAATGGCACCAGGTTCTTCAGAGGTTGCAGAACCCTCTTAGATTCTCTCAAATCCACCACTCAAGCATACTCTTCTACTCCTGCGGTCTCTCC
CAAGGGGAAGCTAAAAGCCTCAGGTGCCGCCGTTTCGGGCCAAAAATCGGTAGCCGGACCAAAGAAAGAGCCGAATCGTTCGTCGGGGATTTTTAAGCCCTTCCAAGTTT
CTCCGGCTCTCGCTAGCTTCCTCGGCATGTCCGAGACTTCGCGTTCCGAAGCCCTCAAGCAAATATGGGCCCACATCAAGCTGAATAACCTCCAGAGCCCAGCTGATAAG
AGGCAGATCATTTGTGATGAAAAGCTGAAGGCTATATTTGATGGAAGAGAGAGAGTGGGATTCTTAGAGATTGGAAAATTGCTATCCCCTCATTTTGTGAAATCTAGTTA
A
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCAGGTCTTAGCAATGGCACCAGGTTCTTCAGAGGTTGCAGAACCCTCTTAGATTCTCTCAAATCCACCACTCAAGCATACTCTTCTACTCCTGCGGTCTCTCC
CAAGGGGAAGCTAAAAGCCTCAGGTGCCGCCGTTTCGGGCCAAAAATCGGTAGCCGGACCAAAGAAAGAGCCGAATCGTTCGTCGGGGATTTTTAAGCCCTTCCAAGTTT
CTCCGGCTCTCGCTAGCTTCCTCGGCATGTCCGAGACTTCGCGTTCCGAAGCCCTCAAGCAAATATGGGCCCACATCAAGCTGAATAACCTCCAGAGCCCAGCTGATAAG
AGGCAGATCATTTGTGATGAAAAGCTGAAGGCTATATTTGATGGAAGAGAGAGAGTGGGATTCTTAGAGATTGGAAAATTGCTATCCCCTCATTTTGTGAAATCTAGTTA
A
Protein sequenceShow/hide protein sequence
MASGLSNGTRFFRGCRTLLDSLKSTTQAYSSTPAVSPKGKLKASGAAVSGQKSVAGPKKEPNRSSGIFKPFQVSPALASFLGMSETSRSEALKQIWAHIKLNNLQSPADK
RQIICDEKLKAIFDGRERVGFLEIGKLLSPHFVKSS