CuGenDBv2

Gene ID	HG10010832
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RNA polymerase sigma factor
Genome location	Chr06:26313438..26317483
RNA-Seq Expression	HG10010832
Synteny	HG10010832
Gene Ontology terms	GO:0071482 - cellular response to light stimulus (biological process) GO:2000142 - regulation of DNA-templated transcription, initiation (biological process) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0016987 - sigma factor activity (molecular function)
InterPro domains	IPR000943 - RNA polymerase sigma-70 IPR007624 - RNA polymerase sigma-70 region 3 IPR007627 - RNA polymerase sigma-70 region 2 IPR007630 - RNA polymerase sigma-70 region 4 IPR009042 - RNA polymerase sigma-70 region 1.2 IPR013324 - RNA polymerase sigma factor, region 3/4-like IPR013325 - RNA polymerase sigma factor, region 2 IPR014284 - RNA polymerase sigma-70 like domain IPR016262 - RNA polymerase sigma factor, SigB/C/D/F, plastid IPR036388 - Winged helix-like DNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004154029.1 RNA polymerase sigma factor sigB [Cucumis sativus]

4.5e-297

94.66

Show/hide

Query:  MSCLLPQFKCHPETFSIQFKTAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPPTSAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVES
        MSCLLPQFKCHPETFSIQFKTAANYSHHH+FLPTA SSYTKVRDPHSLRTQCILSAASPPTS GTATT +VDRLKLPPFDTNTDSVSVERLRSYLGAVES
Subjt:  MSCLLPQFKCHPETFSIQFKTAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPPTSAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVES

Query:  SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNSNSSRAGTKSQSSP----IHFKWAQFMESERADIIGEPVGVNNRPVEGDALQPSTTESD
        SLASTLLTSEEA+IAAAAAEAVTLAKAAVKVARDAALLANN NSSRAGTKSQSSP    +HFKWAQFMESERADIIGEPVGVN RP+EGDAL+PSTTESD
Subjt:  SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNSNSSRAGTKSQSSP----IHFKWAQFMESERADIIGEPVGVNNRPVEGDALQPSTTESD

Query:  DMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
        DMEPTSEELELLQDE SESITV+SKRQTERKARRTRAAEKT TSV+S KS SSSRKKRNS+QEVDYSDPLRYLRATT+TSRLLTATEELELSEGIQDLLK
Subjt:  DMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK

Query:  LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
        LERLQEEL ERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Subjt:  LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW

Query:  WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
        WIKQAVRK LSDQSRTIRLPFHMVEATYRVKEARKQL  ENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAET ED
Subjt:  WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED

Query:  MLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
        MLIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY+MS
Subjt:  MLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS

XP_008460092.1 PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Cucumis melo]

2.7e-297

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Query:  MSCLLPQFKCHPETFSIQFKTAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPPTSAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVES
        MSCLLPQFKCHPETFSIQFKTAAN SHHH+F+PTA SSYTKVRDPHSLRTQCILSAASPPTS GTATT NVDRLKLPPFDTNTDSVSVERLRSYLGAVES
Subjt:  MSCLLPQFKCHPETFSIQFKTAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPPTSAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVES

Query:  SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNSNSSRAGTKSQSSP----IHFKWAQFMESERADIIGEPVGVNNRPVEGDALQPSTTESD
        SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANN NSSRAGTKSQ SP    +HFKWAQFMESERADIIGEPVGVN RP+EGDAL+PSTTESD
Subjt:  SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNSNSSRAGTKSQSSP----IHFKWAQFMESERADIIGEPVGVNNRPVEGDALQPSTTESD

Query:  DMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
        D+EPTS+ELELLQDE SESITV+SKRQTERKARRTRAAEKT TSVV  KS SSSRKKR+SLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Subjt:  DMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK

Query:  LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
        LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Subjt:  LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW

Query:  WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
        WIKQAVRK LSDQSRTIRLPFHMVEATYRVKEARKQL SENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
Subjt:  WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED

Query:  MLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
        MLIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Subjt:  MLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS

XP_008460093.1 PREDICTED: RNA polymerase sigma factor sigB isoform X2 [Cucumis melo]

4.4e-284

92.07

Show/hide

Query:  MSCLLPQFKCHPETFSIQFKTAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPPTSAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVES
        MSCLLPQFKCHPETFSIQFKTAAN SHHH+F+PTA SSYT                 SPPTS GTATT NVDRLKLPPFDTNTDSVSVERLRSYLGAVES
Subjt:  MSCLLPQFKCHPETFSIQFKTAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPPTSAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVES

Query:  SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNSNSSRAGTKSQSSP----IHFKWAQFMESERADIIGEPVGVNNRPVEGDALQPSTTESD
        SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANN NSSRAGTKSQ SP    +HFKWAQFMESERADIIGEPVGVN RP+EGDAL+PSTTESD
Subjt:  SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNSNSSRAGTKSQSSP----IHFKWAQFMESERADIIGEPVGVNNRPVEGDALQPSTTESD

Query:  DMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
        D+EPTS+ELELLQDE SESITV+SKRQTERKARRTRAAEKT TSVV  KS SSSRKKR+SLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Subjt:  DMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK

Query:  LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
        LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Subjt:  LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW

Query:  WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
        WIKQAVRK LSDQSRTIRLPFHMVEATYRVKEARKQL SENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
Subjt:  WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED

Query:  MLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
        MLIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Subjt:  MLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS

XP_022155781.1 RNA polymerase sigma factor sigB [Momordica charantia]

2.4e-282

90.29

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Query:  MSCLLPQFKCHPETFSIQFK-------TAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPPTSAGTATTFNVDRLKLPPFDTNTDSVSVERLRS
        MSCLLPQFKCHPETFSIQFK       T ANYSHHH FLPTANSS TKVRDPHSLRTQCILSAASP TS GTATTFNV+RLKLPP D NTDS+S ERLRS
Subjt:  MSCLLPQFKCHPETFSIQFK-------TAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPPTSAGTATTFNVDRLKLPPFDTNTDSVSVERLRS

Query:  YLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNSNSSRAGTKSQSS----PIHFKWAQFMESERADIIGEPVGVNNRPVEGDALQ
        YL AVESS ASTLLTSEEATIAAAAAEAVTLAKAAVKVA+DAALL NNSNSS+ G KSQSS     +HFKW QFMESERADIIG PVGVNNRP EGDALQ
Subjt:  YLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNSNSSRAGTKSQSS----PIHFKWAQFMESERADIIGEPVGVNNRPVEGDALQ

Query:  PSTTESDDMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSE
          T ESD  +PT+EELELLQDE S +I VRS+RQTER+A+RTRAAEK ATSVVS+KS SSSRKKRNS+QEVDYSDPLRYLRATTS SRLLTATEELELSE
Subjt:  PSTTESDDMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSE

Query:  GIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
        GIQDLLKLERLQEEL ERYG EPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
Subjt:  GIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK

Query:  FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
        FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
Subjt:  FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDP

Query:  EAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
        EAET+ED+LIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Subjt:  EAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS

XP_038875580.1 RNA polymerase sigma factor sigB isoform X1 [Benincasa hispida]

6.8e-301

96.39

Show/hide

Query:  MSCLLPQFKCHPETFSIQFKTAANYS-HHHTFLPTANSSYTKVRDPHSLRTQCILSAASPPTSAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVE
        MSCLLPQFKCHPETFSIQFKTAANY+ HHHTFLPTANSSYTKVRDPHSLRTQCILSAASPPTS GTATT NVDRL LPPFDTNTDSVSVERLRSYLGAVE
Subjt:  MSCLLPQFKCHPETFSIQFKTAANYS-HHHTFLPTANSSYTKVRDPHSLRTQCILSAASPPTSAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVE

Query:  SSLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNSNSSRAGTKSQSSP----IHFKWAQFMESERADIIGEPVGVNNRPVEGDALQPSTTES
        SSLASTLLTSEEATIAAAAAEAV LAKAAVKVARDAALLANNSNSSRAG KS+SSP    +HFKWAQFMESERADIIGEPVGVNNRP+E DALQPSTT+S
Subjt:  SSLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNSNSSRAGTKSQSSP----IHFKWAQFMESERADIIGEPVGVNNRPVEGDALQPSTTES

Query:  DDMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL
        DDMEPTSEELELLQDE SESITVRSKRQTERKARRTRAAEKTATSVVSLKS SSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTA EELELSEGIQDLL
Subjt:  DDMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL

Query:  KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH
        KLERLQEELA+RYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH
Subjt:  KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAH

Query:  WWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAE
        WWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAE
Subjt:  WWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAE

Query:  DMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
        DMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL+S
Subjt:  DMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K917 RNA polymerase sigma factor

2.2e-297

94.66

Show/hide

Query:  MSCLLPQFKCHPETFSIQFKTAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPPTSAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVES
        MSCLLPQFKCHPETFSIQFKTAANYSHHH+FLPTA SSYTKVRDPHSLRTQCILSAASPPTS GTATT +VDRLKLPPFDTNTDSVSVERLRSYLGAVES
Subjt:  MSCLLPQFKCHPETFSIQFKTAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPPTSAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVES

Query:  SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNSNSSRAGTKSQSSP----IHFKWAQFMESERADIIGEPVGVNNRPVEGDALQPSTTESD
        SLASTLLTSEEA+IAAAAAEAVTLAKAAVKVARDAALLANN NSSRAGTKSQSSP    +HFKWAQFMESERADIIGEPVGVN RP+EGDAL+PSTTESD
Subjt:  SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNSNSSRAGTKSQSSP----IHFKWAQFMESERADIIGEPVGVNNRPVEGDALQPSTTESD

Query:  DMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
        DMEPTSEELELLQDE SESITV+SKRQTERKARRTRAAEKT TSV+S KS SSSRKKRNS+QEVDYSDPLRYLRATT+TSRLLTATEELELSEGIQDLLK
Subjt:  DMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK

Query:  LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
        LERLQEEL ERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Subjt:  LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW

Query:  WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
        WIKQAVRK LSDQSRTIRLPFHMVEATYRVKEARKQL  ENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAET ED
Subjt:  WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED

Query:  MLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
        MLIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY+MS
Subjt:  MLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS

A0A1S3CBA5 RNA polymerase sigma factor

2.1e-284

92.07

Show/hide

Query:  MSCLLPQFKCHPETFSIQFKTAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPPTSAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVES
        MSCLLPQFKCHPETFSIQFKTAAN SHHH+F+PTA SSYT                 SPPTS GTATT NVDRLKLPPFDTNTDSVSVERLRSYLGAVES
Subjt:  MSCLLPQFKCHPETFSIQFKTAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPPTSAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVES

Query:  SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNSNSSRAGTKSQSSP----IHFKWAQFMESERADIIGEPVGVNNRPVEGDALQPSTTESD
        SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANN NSSRAGTKSQ SP    +HFKWAQFMESERADIIGEPVGVN RP+EGDAL+PSTTESD
Subjt:  SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNSNSSRAGTKSQSSP----IHFKWAQFMESERADIIGEPVGVNNRPVEGDALQPSTTESD

Query:  DMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
        D+EPTS+ELELLQDE SESITV+SKRQTERKARRTRAAEKT TSVV  KS SSSRKKR+SLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Subjt:  DMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK

Query:  LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
        LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Subjt:  LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW

Query:  WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
        WIKQAVRK LSDQSRTIRLPFHMVEATYRVKEARKQL SENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
Subjt:  WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED

Query:  MLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
        MLIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Subjt:  MLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS

A0A1S3CD00 RNA polymerase sigma factor

1.3e-297

Show/hide

Query:  MSCLLPQFKCHPETFSIQFKTAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPPTSAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVES
        MSCLLPQFKCHPETFSIQFKTAAN SHHH+F+PTA SSYTKVRDPHSLRTQCILSAASPPTS GTATT NVDRLKLPPFDTNTDSVSVERLRSYLGAVES
Subjt:  MSCLLPQFKCHPETFSIQFKTAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPPTSAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVES

Query:  SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNSNSSRAGTKSQSSP----IHFKWAQFMESERADIIGEPVGVNNRPVEGDALQPSTTESD
        SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANN NSSRAGTKSQ SP    +HFKWAQFMESERADIIGEPVGVN RP+EGDAL+PSTTESD
Subjt:  SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNSNSSRAGTKSQSSP----IHFKWAQFMESERADIIGEPVGVNNRPVEGDALQPSTTESD

Query:  DMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
        D+EPTS+ELELLQDE SESITV+SKRQTERKARRTRAAEKT TSVV  KS SSSRKKR+SLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Subjt:  DMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK

Query:  LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
        LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Subjt:  LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW

Query:  WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
        WIKQAVRK LSDQSRTIRLPFHMVEATYRVKEARKQL SENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
Subjt:  WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED

Query:  MLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
        MLIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Subjt:  MLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS

A0A5A7T955 RNA polymerase sigma factor

1.1e-280

95.07

Show/hide

Query:  MSCLLPQFKCHPETFSIQFKTAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPPTSAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVES
        MSCLLPQFKCHPETFSIQFKTAAN SHHH+FLPTA SSYTKVRDPHSLRTQCILSAASPPTS GTATT NVDRLKLPPFDTNTDSVSVERLRSYLGAVES
Subjt:  MSCLLPQFKCHPETFSIQFKTAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPPTSAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVES

Query:  SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNSNSSRAGTKSQSSP----IHFKWAQFMESERADIIGEPVGVNNRPVEGDALQPSTTESD
        SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANN NSSRAGTKSQ SP    +HFKWAQFMESERADIIGEPVGVN RP+EGDAL+PSTTESD
Subjt:  SLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNSNSSRAGTKSQSSP----IHFKWAQFMESERADIIGEPVGVNNRPVEGDALQPSTTESD

Query:  DMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
        D+EPTSEELELLQDE SESITV+SKRQTERKARRTRAAEKT TSVV  KS SSSRKKR+SLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Subjt:  DMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK

Query:  LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
        LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW
Subjt:  LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW

Query:  WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
        WIKQAVRK LSDQSRTIRLPFHMVEATYRVKEARKQL SENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED
Subjt:  WIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAED

Query:  MLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMG
        MLIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKTLQEIGEIMG
Subjt:  MLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMG

A0A6J1DSR7 RNA polymerase sigma factor

1.2e-282

90.29

Show/hide

Query:  MSCLLPQFKCHPETFSIQFK-------TAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPPTSAGTATTFNVDRLKLPPFDTNTDSVSVERLRS
        MSCLLPQFKCHPETFSIQFK       T ANYSHHH FLPTANSS TKVRDPHSLRTQCILSAASP TS GTATTFNV+RLKLPP D NTDS+S ERLRS
Subjt:  MSCLLPQFKCHPETFSIQFK-------TAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPPTSAGTATTFNVDRLKLPPFDTNTDSVSVERLRS

Query:  YLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNSNSSRAGTKSQSS----PIHFKWAQFMESERADIIGEPVGVNNRPVEGDALQ
        YL AVESS ASTLLTSEEATIAAAAAEAVTLAKAAVKVA+DAALL NNSNSS+ G KSQSS     +HFKW QFMESERADIIG PVGVNNRP EGDALQ
Subjt:  YLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNSNSSRAGTKSQSS----PIHFKWAQFMESERADIIGEPVGVNNRPVEGDALQ

Query:  PSTTESDDMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSE
          T ESD  +PT+EELELLQDE S +I VRS+RQTER+A+RTRAAEK ATSVVS+KS SSSRKKRNS+QEVDYSDPLRYLRATTS SRLLTATEELELSE
Subjt:  PSTTESDDMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSE

Query:  GIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
        GIQDLLKLERLQEEL ERYG EPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK
Subjt:  GIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFK

Query:  FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
        FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDP
Subjt:  FSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDP

Query:  EAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
        EAET+ED+LIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Subjt:  EAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS

SwissProt top hits

e value

%identity

Alignment

O22056 RNA polymerase sigma factor sigB

5.2e-187

63.27

Show/hide

Query:  SCLLPQFKCHPETFSIQFKTAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPPTSAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGA----
        SCLLPQFKC P++FSI F+T+     H+             +     + QC +S     + A   +  +V +L+LP FDT++DS+  +R  +Y       
Subjt:  SCLLPQFKCHPETFSIQFKTAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPPTSAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGA----

Query:  -----VESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNSNSSRAGTKSQSSPIHFKWAQFMESERADIIGEPVGVNNRPVEGDALQPST
             +E+  + TLLTS+EA + AAAAEAV LA+AAVKVA+DA L  N++N++     S ++    KW QF E ERA I+G  + V++  +  D +  S 
Subjt:  -----VESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNSNSSRAGTKSQSSPIHFKWAQFMESERADIIGEPVGVNNRPVEGDALQPST

Query:  TESD---DME-PTSEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELS
        +  +   D+E    EE+ELL+++ S S+ VRS RQTERKARR +  EKTA+ + S+K+ SS +KKR   QEVD++DPLRYLR TTS+S+LLT  EE ELS
Subjt:  TESD---DME-PTSEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELS

Query:  EGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF
         GIQDLLKLERLQ EL ER G +PTFAQWA+AAGV+Q++LR+R+++GTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGF
Subjt:  EGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF

Query:  KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISD
        KFSTYAHWWIKQAVRKSLSDQSR IRLPFHMVEATYRVKEARKQLYSE G+HP +EEIAEA GLSMKRL AVL++PK PRSL+QKIG+NQNLKPSEVI+D
Subjt:  KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISD

Query:  PEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
        PEA T+ED+LIK+FM+QDL+KVLDSL  RE+QVIRWRFGMEDGRMKTLQEIGE+MGVSRER+RQIES AFRKLKNKKR  HLQQYL++
Subjt:  PEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS

P26683 RNA polymerase sigma factor SigA

1.3e-76

46.65

Show/hide

Query:  SSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSN
        ++ SR++  S ++    D +R         RLL A EE+EL+  I DLL+LER++E L+E+   +P  ++WA A  +     R RL+ G   KDKM++SN
Subjt:  SSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSN

Query:  IRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEI
        +RLV+SIAK Y   G++ QDL+QEG  GL+R AEKFD  KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E   R+K+  K L  E GR P +EEI
Subjt:  IRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEI

Query:  AEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVS
        A    +++++L  +  + + P SLE  IG  ++ +  + I + + ET ED + K  +++DLEKVLDSL+PRER V+R R+G++DGRMKTL+EIG+I  V+
Subjt:  AEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVS

Query:  RERIRQIESCAFRKLKNKKRTKHLQQYL
        RERIRQIE+ A RKL++  R   L++Y+
Subjt:  RERIRQIESCAFRKLKNKKRTKHLQQYL

P38023 RNA polymerase sigma factor SigA1

4.3e-72

41.71

Show/hide

Query:  SEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSL-------------KSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELS
        ++  ELL      + T ++KR + +KA  T A  + AT++                +   ++ K +  +++    D +R         RLL A EE+EL+
Subjt:  SEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSL-------------KSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELS

Query:  EGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF
          I DLL LER+++EL E+    P+ A+WAAA        R+RL  G   KDKM++SN+RLV+SIAK Y   G++ QDL+QEG  GL+R AEKFD  KG+
Subjt:  EGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF

Query:  KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISD
        KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E   R+K+  K L  E GR P +EEIA    +++++L  +  + + P SLE  IG  ++ +  + I +
Subjt:  KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISD

Query:  PEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
         + ET ED + K  +++DLE VL +L+PRER V+R R+G++DGRMKTL+EIG++  V+RERIRQIE+ A RKL++  R   L++Y+
Subjt:  PEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL

P52322 RNA polymerase sigma factor SigA

3.0e-65

37.89

Show/hide

Query:  DMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
        D +   E++EL  +E S+S   +  R+     RR  A +K  T                        D +R         RLL A EE+EL+  I DLLK
Subjt:  DMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK

Query:  LERLQEE----------------------LAERYGNEPTFA-----------------QWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNY
        LER++E+                      + E+   EP  +                 +W A +       ++RL +G   K+KM++SN+RLV+SIAK Y
Subjt:  LERLQEE----------------------LAERYGNEPTFA-----------------QWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNY

Query:  QGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRL
           G++ QDL+QEG  GL+R AEKFD  KG+KFSTYA WWI+QA+ ++++DQSRTIRLP H+ E   R+K+  K L  E  R P +EEIA    +++++L
Subjt:  QGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRL

Query:  AAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCA
          +  + + P SLE  IG  ++ +  + I + + ET ED + K  +++DLE VLD+L+PRER V+R R+G++DGRMKTL+EIG+I  V+RERIRQIE+ A
Subjt:  AAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCA

Query:  FRKLKNKKRTKHLQQYL
         RKL++  R   L++Y+
Subjt:  FRKLKNKKRTKHLQQYL

P74565 RNA polymerase sigma factor SigA

1.5e-64

38.67

Show/hide

Query:  KSSSSSRKKRNSLQEVDYS-DPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFA----------------------------
        K     + +++++++  Y+ D +R         RLL A EE+EL+  I DLL+LE +++ L  +   +P+                              
Subjt:  KSSSSSRKKRNSLQEVDYS-DPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFA----------------------------

Query:  ----------------QWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIK
                        +W+     N    R+RL      KDKM++SN+RLV+SIAK Y   G++ QDL+QEG  GL+R AEKFD  KG+KFSTYA WWI+
Subjt:  ----------------QWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIK

Query:  QAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLI
        QA+ ++++DQSRTIRLP H+ E   R+K+  K L  E  R P +EEIAE   +++++L  +  + + P SLE  IG  ++ +  + I + + ET ED + 
Subjt:  QAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLI

Query:  KQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
        K  +++DLE VLD+L+PRER V+R R+G++DGRMKTL+EIG+I  V+RERIRQIE+ A RKL++  R   L++Y+
Subjt:  KQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL

Arabidopsis top hits

e value

%identity

Alignment

AT1G08540.1 RNApolymerase sigma subunit 2

3.7e-188

63.27

Show/hide

Query:  SCLLPQFKCHPETFSIQFKTAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPPTSAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGA----
        SCLLPQFKC P++FSI F+T+     H+             +     + QC +S     + A   +  +V +L+LP FDT++DS+  +R  +Y       
Subjt:  SCLLPQFKCHPETFSIQFKTAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPPTSAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGA----

Query:  -----VESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNSNSSRAGTKSQSSPIHFKWAQFMESERADIIGEPVGVNNRPVEGDALQPST
             +E+  + TLLTS+EA + AAAAEAV LA+AAVKVA+DA L  N++N++     S ++    KW QF E ERA I+G  + V++  +  D +  S 
Subjt:  -----VESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNSNSSRAGTKSQSSPIHFKWAQFMESERADIIGEPVGVNNRPVEGDALQPST

Query:  TESD---DME-PTSEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELS
        +  +   D+E    EE+ELL+++ S S+ VRS RQTERKARR +  EKTA+ + S+K+ SS +KKR   QEVD++DPLRYLR TTS+S+LLT  EE ELS
Subjt:  TESD---DME-PTSEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELS

Query:  EGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF
         GIQDLLKLERLQ EL ER G +PTFAQWA+AAGV+Q++LR+R+++GTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGF
Subjt:  EGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGF

Query:  KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISD
        KFSTYAHWWIKQAVRKSLSDQSR IRLPFHMVEATYRVKEARKQLYSE G+HP +EEIAEA GLSMKRL AVL++PK PRSL+QKIG+NQNLKPSEVI+D
Subjt:  KFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISD

Query:  PEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
        PEA T+ED+LIK+FM+QDL+KVLDSL  RE+QVIRWRFGMEDGRMKTLQEIGE+MGVSRER+RQIES AFRKLKNKKR  HLQQYL++
Subjt:  PEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS

AT1G64860.1 sigma factor A

7.0e-38

32.5

Show/hide

Query:  KARRTRAAEKT-ATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQ
        + RR  A +KT  T V ++   SS ++ R  ++ V   D             +L+  E + LS+ I+  L+L+  +  L +R G EP+  Q A +  +++
Subjt:  KARRTRAAEKT-ATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQ

Query:  RTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYR
          L+  L    L ++K+  SN+RLV+SIA+ Y   G  + DLVQ G  GL+RG EKFD+SKGF+ STY +WWI+Q V ++L D SRT+RLP H+ E    
Subjt:  RTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYR

Query:  VKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEV----ISDPEAET-----AEDMLIKQFMKQDLEKVLD-SLN
        ++ A+ +L  E G  P  + IAE+  +S K++           SL++    + N  P E     I+D   E       +D+     +K+++ K++  +L 
Subjt:  VKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEV----ISDPEAET-----AEDMLIKQFMKQDLEKVLD-SLN

Query:  PRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM
         RE+++IR  +G+ D    T ++I + +G+SRER+RQ+   A  KLK+  R + ++  ++
Subjt:  PRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM

AT2G36990.1 RNApolymerase sigma-subunit F

1.5e-64

38.36

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Query:  VEGDALQPSTTESDDMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTAT
        V+     PS    D +  TS  + L +    +   VRSKRQ ER+A+  RA +             +S KK+   Q  D  D L+       T +LLTA 
Subjt:  VEGDALQPSTTESDDMEPTSEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTAT

Query:  EELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF
        EE EL   IQ LLKLE+++ +L  + G EPT  +WA A G++   L+  ++ G   ++K+I +N+RLV+ IAK YQ  G+N QDL+QEG  GL++  EKF
Subjt:  EELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF

Query:  DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKP
            G +F+TYA+WWI+Q++RKS+   SRTIRLP ++     +V EARK    E    P  EE+A   G+S ++L  +L   + P S++Q I  +Q+   
Subjt:  DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKP

Query:  SEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY
         E+  D   ET    + KQ M+  +  +L+ L+P+ER++I+ RFG++ G+ ++L EIGEI G+S+ER+RQ+ES A  +LK    +  L  Y
Subjt:  SEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY

AT3G53920.1 RNApolymerase sigma-subunit C

2.7e-53

33.16

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Query:  SEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQ
        S+  EL+    ++ + V S+R+ ++KARR+     TA +          R   N++       P +Y +     SR      E E+S G++ +  +ER++
Subjt:  SEELELLQDEFSESITVRSKRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQ

Query:  EELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA
         +L E  G   + + WAAAAG+N++ L + L+YG  C+D+++KS   LV+ +A+NY+G G+  +DL+Q G  G+++GAE+FD ++G+KFSTY  +WI+++
Subjt:  EELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQA

Query:  VRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG-RHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIK
        +   +S  +R + +P  ++     +++ARK L + +G ++  DEEIA+  G S+K++ A     K   S+++K+G     K  E   D   E+ E+ +++
Subjt:  VRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG-RHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIK

Query:  QFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL
        Q  ++D+  +L+ L PRE+QV+  R+G++D R K+L+EIG+++ VS+E IR+IE  A  KL+++   + L+ YL
Subjt:  QFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL

AT5G13730.1 sigma factor 4

1.1e-46

36.3

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Query:  STSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCR
        S S  L+  EE++L   +++  KLE L   + E   NE      A+  G  +R+  + L      ++K+ +   RLV+SIA  YQG G+NLQDL+QEG  
Subjt:  STSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCR

Query:  GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQK
        GL+RGAE+FD  +G+K STY +WWIKQA+ ++++ +SR ++LP  M E T +V EA   L  +  R P  EEIAE   L++  +   +   ++P SL++ 
Subjt:  GLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQK

Query:  IGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY
           N  +   E++  P+    E+M+ ++ MK ++E++L SL  RE +V+   FG+      + +EIG+ + +SRER+RQI   A +KL+N      L+ Y
Subjt:  IGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY

Query:  LMS
          S
Subjt:  LMS

Sequences

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CDS sequence

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ATGTCTTGTTTACTTCCCCAATTCAAGTGCCATCCTGAAACATTTTCAATTCAATTCAAGACCGCGGCTAATTATTCTCACCATCATACCTTTCTTCCCACTGCCAATTC
CAGTTACACTAAAGTGAGAGATCCTCATAGTTTAAGGACACAATGTATCTTGTCTGCAGCATCACCACCAACATCGGCTGGAACGGCTACAACATTCAACGTGGATCGAC
TTAAATTGCCTCCTTTTGATACTAACACCGACTCAGTCTCTGTGGAAAGACTAAGATCATATTTAGGTGCAGTTGAATCGAGTCTAGCCTCAACACTTCTTACCAGTGAG
GAGGCTACAATAGCAGCTGCCGCAGCTGAAGCTGTTACTCTTGCAAAAGCAGCTGTCAAGGTTGCAAGGGATGCAGCTCTTCTGGCTAACAATAGCAACTCTTCCAGAGC
AGGAACAAAATCTCAATCTTCTCCCATACATTTCAAATGGGCCCAATTTATGGAATCGGAAAGGGCTGATATAATAGGAGAACCAGTTGGAGTTAATAATCGCCCCGTGG
AAGGCGATGCTTTGCAACCAAGCACAACAGAATCTGATGATATGGAGCCAACATCCGAAGAACTTGAACTTTTACAGGATGAATTCTCTGAGAGTATAACTGTAAGGTCA
AAGCGTCAAACGGAAAGGAAAGCCAGAAGAACCAGAGCAGCAGAGAAGACTGCTACTAGTGTCGTGTCATTGAAGTCCAGTTCTAGCAGCCGGAAGAAGCGTAATTCTTT
ACAAGAAGTGGACTACTCCGACCCATTGCGTTATTTAAGAGCAACTACTAGCACTTCTAGACTTCTTACTGCAACTGAAGAACTTGAACTGTCAGAAGGAATTCAGGACT
TACTGAAACTGGAACGGCTCCAGGAGGAGCTTGCAGAACGGTATGGGAATGAGCCAACCTTTGCACAATGGGCAGCTGCTGCTGGAGTCAATCAGAGGACACTGAGGAAG
CGTCTAAATTATGGTACTCTTTGTAAAGACAAAATGATAAAAAGCAATATTCGTCTTGTCATATCGATTGCGAAAAATTATCAGGGAGCTGGGATGAATCTCCAAGATCT
AGTTCAGGAAGGGTGTCGAGGCCTTGTACGGGGTGCGGAGAAATTTGATGCTTCAAAAGGCTTCAAGTTTTCAACCTATGCTCATTGGTGGATAAAGCAGGCGGTTCGAA
AGTCTCTTTCTGATCAGTCCAGGACTATTCGCTTGCCATTTCACATGGTGGAAGCAACTTACAGGGTGAAGGAGGCTAGAAAGCAATTATATAGTGAAAATGGAAGACAT
CCTGATGATGAAGAAATTGCTGAAGCAGCCGGGCTGTCGATGAAGAGGCTTGCTGCAGTACTAATGACTCCTAAAGCACCCAGATCCTTGGAGCAGAAAATCGGAATAAA
CCAAAATCTTAAACCGTCGGAAGTCATTTCCGACCCCGAGGCAGAAACTGCTGAAGATATGTTGATAAAACAATTCATGAAGCAGGACCTCGAAAAGGTACTCGACTCCC
TTAACCCGAGAGAGAGACAAGTAATTAGATGGAGGTTTGGGATGGAAGATGGCAGGATGAAAACATTGCAAGAAATAGGAGAAATAATGGGTGTAAGTAGGGAAAGAATT
AGACAAATTGAATCATGTGCATTCAGAAAACTCAAAAACAAGAAGAGAACTAAACATTTGCAGCAGTATCTGATGTCATGA

mRNA sequence

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Protein sequence

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MSCLLPQFKCHPETFSIQFKTAANYSHHHTFLPTANSSYTKVRDPHSLRTQCILSAASPPTSAGTATTFNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSE
EATIAAAAAEAVTLAKAAVKVARDAALLANNSNSSRAGTKSQSSPIHFKWAQFMESERADIIGEPVGVNNRPVEGDALQPSTTESDDMEPTSEELELLQDEFSESITVRS
KRQTERKARRTRAAEKTATSVVSLKSSSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRK
RLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRH
PDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKTLQEIGEIMGVSRERI
RQIESCAFRKLKNKKRTKHLQQYLMS

HG10010832 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome