CuGenDBv2

Gene ID	HG10010859
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Phosphorylated adapter RNA export protein
Genome location	Chr06:26551574..26554187
RNA-Seq Expression	HG10010859
Synteny	HG10010859
Gene Ontology terms	GO:0006408 - snRNA export from nucleus (biological process) GO:0015031 - protein transport (biological process) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR019385 - Phosphorylated adapter RNA export protein, RNA-binding domain IPR038092 - Phosphorylated adapter RNA export protein, RNA-binding domain superfamily IPR039047 - Phosphorylated adapter RNA export protein

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6574787.1 hypothetical protein SDJN03_25426, partial [Cucurbita argyrosperma subsp. sororia]

3.2e-114

88.14

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Query:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM
        MDGQENILEAIYE+DDLENDDVEMVDVEEGEF++ NI+T+KSS+TD+QAPSID +SKNRKRR+KKKKNKRK  ESGSNGTDINRFVLDACRRLKEKKSYM
Subjt:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM

Query:  MYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSG
        +YTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATE  K SSQ+V HLFS G+S 
Subjt:  MYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSG

Query:  DQPDRIQSFTPSQNQSKESNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT
        DQPD IQS TP QNQSKESN EEKRSS+H RLRVPVSYDDDILRENPKEE+T+
Subjt:  DQPDRIQSFTPSQNQSKESNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT

KAG7013367.1 hypothetical protein SDJN02_23531, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.2e-114

88.14

Show/hide

Query:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM
        MDGQENILEAIYE+DDLENDDVEMVDVEEGEF++ NI+T+KSS+TD+QAPSID +SKNRKRR+KKKKNKRK  ESGSNGTDINRFVLDACRRLKEKKSYM
Subjt:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM

Query:  MYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSG
        +YTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATE  K SSQ+V HLFS G+S 
Subjt:  MYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSG

Query:  DQPDRIQSFTPSQNQSKESNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT
        DQPD IQS TP QNQSKESN EEKRSS+H RLRVPVSYDDDILRENPKEE+T+
Subjt:  DQPDRIQSFTPSQNQSKESNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT

XP_022959193.1 uncharacterized protein LOC111460255 [Cucurbita moschata]

1.1e-114

88.54

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Query:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM
        MDGQENILEAIYE+DDLENDDVEMVDVEEGEF++ NI+T+KSS+TD+QAPSID +SKNRKRR+KKKKNKRK  ESGSNGTDINRFVLDACRRLKEKKSYM
Subjt:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM

Query:  MYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSG
        +YTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATE  K SSQ V HLFS G+S 
Subjt:  MYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSG

Query:  DQPDRIQSFTPSQNQSKESNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT
        DQPD IQS TP QNQSKESNSEEKRSS+H RLRVPVSYDDDILRENPKEE+T+
Subjt:  DQPDRIQSFTPSQNQSKESNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT

XP_023547831.1 uncharacterized protein LOC111806680 [Cucurbita pepo subsp. pepo]

1.0e-115

89.33

Show/hide

Query:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM
        MDGQENILEAIYE+DDLENDDVEMVDVEEGEF++ NI+T+KSS+TD+QAPSID RSKNRKRR+KKKKNKRK  ESGSNGTDINRFVLDACRRLKEKKSYM
Subjt:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM

Query:  MYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSG
        +YTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATE  K SSQ+V HLFS G+S 
Subjt:  MYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSG

Query:  DQPDRIQSFTPSQNQSKESNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT
        DQPD IQS TP QNQSKESNSEEKRSS+H RLRVPVSYDDDILRENPKEE+TT
Subjt:  DQPDRIQSFTPSQNQSKESNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT

XP_038906568.1 uncharacterized protein LOC120092530 [Benincasa hispida]

5.0e-115

88.54

Show/hide

Query:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM
        MDGQEN+LEAIYED+DLENDDVEMVDV EGEF+  NINT+KSS+TD+++ SIDQRSKNRKRR KKKKNKRK CESGS GTDINRFVLDACRRLKEKKSYM
Subjt:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM

Query:  MYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSG
        MYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQP+IRREATETEKE+SQ+VPHLFS GSSG
Subjt:  MYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSG

Query:  DQPDRIQSFTPSQNQSKESNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT
        DQ D  Q  TP QN+SKESN+EEKRSSIHNRLRVPVSYDDD+LRENPKEE+TT
Subjt:  DQPDRIQSFTPSQNQSKESNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KBJ7 Phosphorylated adapter RNA export protein

1.7e-113

87.75

Show/hide

Query:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM
        MDGQENILEAIYEDD LENDDVEM DVEEGEFID NIN +KSS TD+QAPS DQRSKNRK RTKKKKNKRK+ E GSNGTDINRFVL+ACR LKEKKSYM
Subjt:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM

Query:  MYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSG
        +YTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPN+RREATETEKESSQKVPHLFS GSS 
Subjt:  MYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSG

Query:  DQPDRIQSFTPSQNQSKESNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT
        + PD +QSF+   NQSKESNSEEK SSIH+RLRVPVSYDDD+L+ENPKEE+TT
Subjt:  DQPDRIQSFTPSQNQSKESNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT

A0A1S3CD38 Phosphorylated adapter RNA export protein

3.0e-113

87.8

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Query:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM
        MDGQENILEAIYE D+ ENDDVEM DVEEGEFID+NIN +KSS TD+QAPS DQRSKNRKRRTKKKKNKRK+ E GSNGTDINRFVLDACRRLKEKKSYM
Subjt:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM

Query:  MYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSV-GSS
        +YTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREA ETEKESSQKVPHLFS  GSS
Subjt:  MYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSV-GSS

Query:  GDQPDRIQSFTPSQNQSKESNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT
         + PD +QSFT   N+SKESNSEEKRSSIH+RLRVP+SYDDD+L+ENPKEE+TT
Subjt:  GDQPDRIQSFTPSQNQSKESNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT

A0A5D3DLH5 Phosphorylated adapter RNA export protein

2.3e-113

87.8

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Query:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM
        MDG ENILEAIYE D+ ENDDVEM DVEEGEFID+NIN +KSS TD+QAPS DQRSKNRKRRTKKKKNKRK+ E GSNGTDINRFVLDACRRLKEKKSYM
Subjt:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM

Query:  MYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSV-GSS
        +YTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFS  GSS
Subjt:  MYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSV-GSS

Query:  GDQPDRIQSFTPSQNQSKESNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT
         + PD +QSFT   N+SKESNSEEKRSSIH+RLRVP+SYDDD+L+ENPKEE+TT
Subjt:  GDQPDRIQSFTPSQNQSKESNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT

A0A6J1H592 Phosphorylated adapter RNA export protein

5.4e-115

88.54

Show/hide

Query:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM
        MDGQENILEAIYE+DDLENDDVEMVDVEEGEF++ NI+T+KSS+TD+QAPSID +SKNRKRR+KKKKNKRK  ESGSNGTDINRFVLDACRRLKEKKSYM
Subjt:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM

Query:  MYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSG
        +YTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATE  K SSQ V HLFS G+S 
Subjt:  MYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSG

Query:  DQPDRIQSFTPSQNQSKESNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT
        DQPD IQS TP QNQSKESNSEEKRSS+H RLRVPVSYDDDILRENPKEE+T+
Subjt:  DQPDRIQSFTPSQNQSKESNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT

A0A6J1KUZ4 Phosphorylated adapter RNA export protein

2.3e-113

88.14

Show/hide

Query:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM
        MDGQENILEAIYE+DDLENDDVEMVDVEEGE ++ NI+T+KSS+TD+QAPSID RSKNRKRR+KKKKNKRK  ESGSNGTDINRFVLDACRRLKEKKSYM
Subjt:  MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYM

Query:  MYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSG
        +YTAVGCLGVSALSE IKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATE  K SSQ+V HLFS G+S 
Subjt:  MYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSG

Query:  DQPDRIQSFTPSQNQSKESNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT
        DQPD IQS TP QNQSKESNSEEKRSS+  RLRVPVSYDDDILRENPKEE+TT
Subjt:  DQPDRIQSFTPSQNQSKESNSEEKRSSIHNRLRVPVSYDDDILRENPKEEETT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G20430.1 CONTAINS InterPro DOMAIN/s: Phosphorylated adapter RNA export protein, RNA-binding domain (InterPro:IPR019385); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 3; Metazoa - 56; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).

3.9e-49

47.53

Show/hide

Query:  MDGQENILEAIYEDDDLEN-DDVEMVDVEEGEF-IDSNI------NTDKSSVTDLQA-----PSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVL
        M+G+E++L+AI E+D  EN +DVEMVDVEEGE  +D ++      N D   V D +A       + Q +KN KR+ KKKK K    +   +   ++ FV 
Subjt:  MDGQENILEAIYEDDDLEN-DDVEMVDVEEGEF-IDSNI------NTDKSSVTDLQA-----PSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVL

Query:  DACRRLKEKKSYMMYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESS
        D CRRLKEKKSYM+YTAVGCLG++ALS+L+ EV A++ CGGQ+TADG R RT GG+LW+IIK R+P AY+EIMK+ KEFEKQF+QPN R ++     + S
Subjt:  DACRRLKEKKSYMMYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESS

Query:  QKVPHLFSVGSSGDQPDRIQSFTPSQNQSKESNSEEKRSSIHNRLRVPVSYDDDILRENPKEE
             L S   S D+    +       +  ES  E++R S+H R+RVPVSY DD+ R+ P ++
Subjt:  QKVPHLFSVGSSGDQPDRIQSFTPSQNQSKESNSEEKRSSIHNRLRVPVSYDDDILRENPKEE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGATGGACAAGAGAACATACTTGAGGCCATATATGAAGACGATGACTTGGAAAATGATGATGTTGAAATGGTTGATGTGGAAGAAGGAGAGTTCATAGATAGCAATAT
CAATACAGATAAAAGCAGTGTTACTGATCTCCAAGCACCAAGTATAGATCAGAGAAGTAAAAATCGTAAACGTCGGACAAAGAAAAAGAAGAACAAAAGAAAGGCATGCG
AGTCAGGTTCAAATGGCACTGATATTAACAGGTTTGTGTTGGATGCATGCAGACGTTTGAAAGAGAAAAAGTCATACATGATGTACACTGCTGTAGGTTGTCTGGGAGTC
TCTGCATTAAGCGAACTTATCAAAGAGGTCAATGCAGTTCAGGCTTGTGGAGGTCAAATGACTGCAGATGGCAGGCGCTTTCGGACAGGAGGTGGCATATTATGGAGCAT
CATCAAAACCCGGGAACCAAATGCCTATAAAGAGATTATGAAACGAGCAAAAGAGTTTGAGAAACAATTTAAGCAACCAAATATCAGAAGGGAGGCTACAGAAACTGAGA
AAGAAAGTTCTCAAAAAGTTCCGCACCTGTTCTCTGTAGGATCTTCAGGAGATCAACCAGACCGCATCCAAAGCTTTACCCCATCGCAGAATCAATCTAAAGAATCAAAT
TCCGAAGAAAAACGATCTTCTATTCACAATAGATTAAGAGTCCCAGTTTCATATGATGATGACATCCTTCGAGAGAATCCGAAAGAGGAAGAAACAACTTGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MDGQENILEAIYEDDDLENDDVEMVDVEEGEFIDSNINTDKSSVTDLQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGV
SALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREATETEKESSQKVPHLFSVGSSGDQPDRIQSFTPSQNQSKESN
SEEKRSSIHNRLRVPVSYDDDILRENPKEEETT

HG10010859 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome