CuGenDBv2

Gene ID	HG10010877
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	LysM domain-containing protein
Genome location	Chr06:26716840..26717112
RNA-Seq Expression	HG10010877
Synteny	HG10010877
Gene Ontology terms	NA
InterPro domains	IPR018392 - LysM domain IPR036779 - LysM domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0040027.1 hypothetical protein E6C27_scaffold122G003130 [Cucumis melo var. makuwa]

2.0e-26

81.93

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Query:  MASCYSVFIITVMVVITVVASAESKPCDDIYIVKEGETLHTISTKCSDPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLL
        MAS +SVF ITVM +I VVASAESKPC+DIY+VKEGETLHTIS KC DPFIVD+NP IQ+SDDVFPGLLIQIT T INSRKLL
Subjt:  MASCYSVFIITVMVVITVVASAESKPCDDIYIVKEGETLHTISTKCSDPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLL

KAG6574776.1 hypothetical protein SDJN03_25415, partial [Cucurbita argyrosperma subsp. sororia]

3.3e-21

68.29

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Query:  SCYSVFIITVMVVITVVASAESKPCDDIYIVKEGETLHTISTKCSDPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLLF
        SC SVFI+  ++++   ASA+S PCDDIY+V+EGE+LH+IS KC DPFIVD+NPQIQ+SDDVFPGLLI+IT + +NSRKLLF
Subjt:  SCYSVFIITVMVVITVVASAESKPCDDIYIVKEGETLHTISTKCSDPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLLF

KGN46208.1 hypothetical protein Csa_005039 [Cucumis sativus]

1.2e-26

80.72

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Query:  MASCYSVFIITVMVVITVVASAESKPCDDIYIVKEGETLHTISTKCSDPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLL
        MAS +SVF +TVM +I VVASAES+PCDDIY+VKEGETLHTIS KC DPFIVD+NP IQ+SDDVFPGLLIQIT T INSRKLL
Subjt:  MASCYSVFIITVMVVITVVASAESKPCDDIYIVKEGETLHTISTKCSDPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLL

XP_022959284.1 uncharacterized protein LOC111460313 [Cucurbita moschata]

5.7e-21

68.29

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Query:  SCYSVFIITVMVVITVVASAESKPCDDIYIVKEGETLHTISTKCSDPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLLF
        SC SVFI   ++++   ASA+S PCDDIY+V+EGE+LH+IS KC DPFIVD+NPQIQ+SDDVFPGLLI+IT + +NSRKLLF
Subjt:  SCYSVFIITVMVVITVVASAESKPCDDIYIVKEGETLHTISTKCSDPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLLF

XP_023006696.1 uncharacterized protein LOC111499354 [Cucurbita maxima]

1.5e-21

68.29

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Query:  SCYSVFIITVMVVITVVASAESKPCDDIYIVKEGETLHTISTKCSDPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLLF
        SCYSVFI   ++++   ASA+S PCDDIY+V+EGE+LH+IS KC DPFIVD+NPQIQ+SDDVFPGLLI+IT + +NSRKL F
Subjt:  SCYSVFIITVMVVITVVASAESKPCDDIYIVKEGETLHTISTKCSDPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLLF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K9P3 LysM domain-containing protein

5.7e-27

80.72

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Query:  MASCYSVFIITVMVVITVVASAESKPCDDIYIVKEGETLHTISTKCSDPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLL
        MAS +SVF +TVM +I VVASAES+PCDDIY+VKEGETLHTIS KC DPFIVD+NP IQ+SDDVFPGLLIQIT T INSRKLL
Subjt:  MASCYSVFIITVMVVITVVASAESKPCDDIYIVKEGETLHTISTKCSDPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLL

A0A5D3DLK6 Uncharacterized protein

9.8e-27

81.93

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Query:  MASCYSVFIITVMVVITVVASAESKPCDDIYIVKEGETLHTISTKCSDPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLL
        MAS +SVF ITVM +I VVASAESKPC+DIY+VKEGETLHTIS KC DPFIVD+NP IQ+SDDVFPGLLIQIT T INSRKLL
Subjt:  MASCYSVFIITVMVVITVVASAESKPCDDIYIVKEGETLHTISTKCSDPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLL

A0A6A1VEZ7 LysM domain-containing protein

2.3e-15

72.88

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Query:  KPCDDIYIVKEGETLHTISTKCSDPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLL
        +PCD+IY+V EGETLHTIS KCSDPFIV+ NP IQ+ DDVFPGL+I+I  TP NS KLL
Subjt:  KPCDDIYIVKEGETLHTISTKCSDPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLL

A0A6J1H7L7 uncharacterized protein LOC111460313

2.8e-21

68.29

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Query:  SCYSVFIITVMVVITVVASAESKPCDDIYIVKEGETLHTISTKCSDPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLLF
        SC SVFI   ++++   ASA+S PCDDIY+V+EGE+LH+IS KC DPFIVD+NPQIQ+SDDVFPGLLI+IT + +NSRKLLF
Subjt:  SCYSVFIITVMVVITVVASAESKPCDDIYIVKEGETLHTISTKCSDPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLLF

A0A6J1KYG6 uncharacterized protein LOC111499354

7.2e-22

68.29

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Query:  SCYSVFIITVMVVITVVASAESKPCDDIYIVKEGETLHTISTKCSDPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLLF
        SCYSVFI   ++++   ASA+S PCDDIY+V+EGE+LH+IS KC DPFIVD+NPQIQ+SDDVFPGLLI+IT + +NSRKL F
Subjt:  SCYSVFIITVMVVITVVASAESKPCDDIYIVKEGETLHTISTKCSDPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLLF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G52790.1 peptidoglycan-binding LysM domain-containing protein

5.5e-14

70.21

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Query:  CDDIYIVKEGETLHTISTKCSDPFIVDHNPQIQESDDVFPGLLIQIT
        CD+IY VKEGETL TIS KC DP+IV+ NP I + DD+FPGLLI+IT
Subjt:  CDDIYIVKEGETLHTISTKCSDPFIVDHNPQIQESDDVFPGLLIQIT

AT4G25433.1 peptidoglycan-binding LysM domain-containing protein

1.9e-14

62.5

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Query:  KPCDDIYIVKEGETLHTISTKCSDPFIVDHNPQIQESDDVFPGLLIQI
        +PC+++Y+V EG+TLH+IS KC DPFIV+ NP I + DDVFPGLLI++
Subjt:  KPCDDIYIVKEGETLHTISTKCSDPFIVDHNPQIQESDDVFPGLLIQI

AT5G62150.1 peptidoglycan-binding LysM domain-containing protein

8.5e-15

46.15

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Query:  ASCYSVFIITVMVVITVVASAES----------KPCDDIYIVKEGETLHTISTKCSDPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKL
        A C +V +++++++++V  +  S          KPC++IYIV EGETLHTI  KC DPFIV+ NP I + DDVFPGL+++I     N RKL
Subjt:  ASCYSVFIITVMVVITVVASAES----------KPCDDIYIVKEGETLHTISTKCSDPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKL

Sequences

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CDS sequence

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ATGGCTTCCTGCTACTCTGTTTTCATAATAACTGTGATGGTGGTGATCACAGTGGTGGCATCTGCAGAATCCAAGCCTTGCGACGACATCTACATCGTCAAAGAAGGTGA
GACGCTGCACACAATCAGCACCAAGTGCAGCGATCCCTTCATTGTTGACCACAATCCCCAGATTCAAGAGTCAGATGATGTTTTCCCAGGACTCCTCATCCAAATTACCA
CTACCCCCATCAACTCCAGGAAGTTGCTTTTCAGCTATATACCCCCAATATAA

mRNA sequence

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Protein sequence

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MASCYSVFIITVMVVITVVASAESKPCDDIYIVKEGETLHTISTKCSDPFIVDHNPQIQESDDVFPGLLIQITTTPINSRKLLFSYIPPI

HG10010877 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome