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HG10010898 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10010898
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptiontranscription factor LAF1
Genome locationChr01:82272..85060
RNA-Seq ExpressionHG10010898
SyntenyHG10010898
Gene Ontology termsGO:0010597 - green leaf volatile biosynthetic process (biological process)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004148377.1 transcription factor LAF1 [Cucumis sativus]1.7e-3845.63Show/hide
Query:  TASHRTKSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA----------------------------------------------------------
        TASHRTKSKHR+GLWSP+ED+RLRNYIL +GHGCWSSLPSKA                                                          
Subjt:  TASHRTKSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA----------------------------------------------------------

Query:  --------------------------------DSADSSTTNPSMDSPKPNNN--SLPKLFFAEWLAPNHHIAGGWSSGGSEF------------DFEFGT
                                        DSADSSTTNPS+ SP PNNN   LPKLFFAEWL       G  S+GGSEF            +FEFG 
Subjt:  --------------------------------DSADSSTTNPSMDSPKPNNN--SLPKLFFAEWLAPNHHIAGGWSSGGSEF------------DFEFGT

Query:  SLGSELQ-----IMDSHVKFEDHN-SSGFANYASVGDVGVEQLLHFGNGFMN
        SLGSEL      IMDSHVKFEDH+ S+GFANYAS GDV VE LLHFGNGFMN
Subjt:  SLGSELQ-----IMDSHVKFEDHN-SSGFANYASVGDVGVEQLLHFGNGFMN

XP_008465864.1 PREDICTED: transcription factor LAF1 [Cucumis melo]6.4e-3844.62Show/hide
Query:  TASHRTKSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA----------------------------------------------------------
        TASHRTKSKHR+GLWSP+ED+RLRNYIL +GHGCWSSLPSKA                                                          
Subjt:  TASHRTKSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA----------------------------------------------------------

Query:  --------------------------------DSADSSTTNPSMDSPKPNNNS--LPKLFFAEWLAPNHHIAGGWSSGGSEF-----------DFEFGTS
                                        DSADSSTTNPS+ SPKPNNN+  LPKLFFAEWL       G   + GSEF           +FEFG +
Subjt:  --------------------------------DSADSSTTNPSMDSPKPNNNS--LPKLFFAEWLAPNHHIAGGWSSGGSEF-----------DFEFGTS

Query:  LGSELQ-----IMDSHVKFEDHN-SSGFANYASVGDVGVEQLLHFGNGFMN
        LGSEL      +MDSHVKFEDH+ S+GFANYAS GDV VE LLHFGNGFMN
Subjt:  LGSELQ-----IMDSHVKFEDHN-SSGFANYASVGDVGVEQLLHFGNGFMN

XP_022995192.1 transcription factor LAF1-like [Cucurbita maxima]1.0e-1935.63Show/hide
Query:  MGCETASHRTKSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA------------------------------------------------------
        MG ETASH+ K KHR+GLWSPEED+RLRN+IL HGH CWSS+P KA                                                      
Subjt:  MGCETASHRTKSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA------------------------------------------------------

Query:  ---------------------------------DSADSSTTNPSMDSPKPNNNSLPKLFFAEWLAPNHHIAGGWSSGGSEFDFEFGT-----------SL
                                         +SADSS T  SMDSPK      PKL FAEWLA       G   G S      GT            L
Subjt:  ---------------------------------DSADSSTTNPSMDSPKPNNNSLPKLFFAEWLAPNHHIAGGWSSGGSEFDFEFGT-----------SL

Query:  GSELQ----IMDSHVKFEDHNSSGFANYASVGDVGVEQLLHFGNGFM
        GSE+Q    +MDSH+KFED   +G  NY       V+QLLHFGNGFM
Subjt:  GSELQ----IMDSHVKFEDHNSSGFANYASVGDVGVEQLLHFGNGFM

XP_023534576.1 transcription factor LAF1-like [Cucurbita pepo subsp. pepo]6.1e-2036.03Show/hide
Query:  MGCETASHRTKSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA------------------------------------------------------
        MG ETASH+ K KHR+GLWSPEED+RLRN+IL HGH CWSS+P KA                                                      
Subjt:  MGCETASHRTKSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA------------------------------------------------------

Query:  ---------------------------------DSADSSTTNPSMDSPKPNNNSLPKLFFAEWLAPNHHIAGGWSSGGSEFDFEFGT-----------SL
                                         DSADSS T  SMDSPK      PKL FAEWLA       G   G S      GT            L
Subjt:  ---------------------------------DSADSSTTNPSMDSPKPNNNSLPKLFFAEWLAPNHHIAGGWSSGGSEFDFEFGT-----------SL

Query:  GSELQ----IMDSHVKFEDHNSSGFANYASVGDVGVEQLLHFGNGFM
        GSE+Q    +MDSH+KFED   +G  NY       V+QLLHFGNGFM
Subjt:  GSELQ----IMDSHVKFEDHNSSGFANYASVGDVGVEQLLHFGNGFM

XP_038888761.1 transcription factor LAF1-like [Benincasa hispida]1.9e-5048.85Show/hide
Query:  MGCETASHRTKSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA------------------------------------------------------
        MGCETASHRTKSKH +GLWSPEEDERLRNYILKHGHGCWSSLP KA                                                      
Subjt:  MGCETASHRTKSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA------------------------------------------------------

Query:  --------------------------------------DSADSSTTNPSMDSPKPNNNSLPKLFFAEWLAPNHHIAGGWSSGGSEF--------------
                                              DSADSSTTNPSM SPKPNNNSLPKLFFAEWLAPN+H AGGW   GS+F              
Subjt:  --------------------------------------DSADSSTTNPSMDSPKPNNNSLPKLFFAEWLAPNHHIAGGWSSGGSEF--------------

Query:  -----DFEFGTSLGSELQ---IMDSHVKFEDHNSSGFANYASVGDVGVEQLLHFGNGFMN
             DFEFG+SLGSELQ   IMDSH+K ED  S+GFA+YASVGDV VEQLLHFGNGF+N
Subjt:  -----DFEFGTSLGSELQ---IMDSHVKFEDHNSSGFANYASVGDVGVEQLLHFGNGFMN

TrEMBL top hitse value%identityAlignment
A0A0A0LEM1 Uncharacterized protein8.2e-3945.63Show/hide
Query:  TASHRTKSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA----------------------------------------------------------
        TASHRTKSKHR+GLWSP+ED+RLRNYIL +GHGCWSSLPSKA                                                          
Subjt:  TASHRTKSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA----------------------------------------------------------

Query:  --------------------------------DSADSSTTNPSMDSPKPNNN--SLPKLFFAEWLAPNHHIAGGWSSGGSEF------------DFEFGT
                                        DSADSSTTNPS+ SP PNNN   LPKLFFAEWL       G  S+GGSEF            +FEFG 
Subjt:  --------------------------------DSADSSTTNPSMDSPKPNNN--SLPKLFFAEWLAPNHHIAGGWSSGGSEF------------DFEFGT

Query:  SLGSELQ-----IMDSHVKFEDHN-SSGFANYASVGDVGVEQLLHFGNGFMN
        SLGSEL      IMDSHVKFEDH+ S+GFANYAS GDV VE LLHFGNGFMN
Subjt:  SLGSELQ-----IMDSHVKFEDHN-SSGFANYASVGDVGVEQLLHFGNGFMN

A0A1S3CRA7 transcription factor LAF13.1e-3844.62Show/hide
Query:  TASHRTKSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA----------------------------------------------------------
        TASHRTKSKHR+GLWSP+ED+RLRNYIL +GHGCWSSLPSKA                                                          
Subjt:  TASHRTKSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA----------------------------------------------------------

Query:  --------------------------------DSADSSTTNPSMDSPKPNNNS--LPKLFFAEWLAPNHHIAGGWSSGGSEF-----------DFEFGTS
                                        DSADSSTTNPS+ SPKPNNN+  LPKLFFAEWL       G   + GSEF           +FEFG +
Subjt:  --------------------------------DSADSSTTNPSMDSPKPNNNS--LPKLFFAEWLAPNHHIAGGWSSGGSEF-----------DFEFGTS

Query:  LGSELQ-----IMDSHVKFEDHN-SSGFANYASVGDVGVEQLLHFGNGFMN
        LGSEL      +MDSHVKFEDH+ S+GFANYAS GDV VE LLHFGNGFMN
Subjt:  LGSELQ-----IMDSHVKFEDHN-SSGFANYASVGDVGVEQLLHFGNGFMN

A0A5A7TAW6 Transcription factor LAF13.1e-3844.62Show/hide
Query:  TASHRTKSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA----------------------------------------------------------
        TASHRTKSKHR+GLWSP+ED+RLRNYIL +GHGCWSSLPSKA                                                          
Subjt:  TASHRTKSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA----------------------------------------------------------

Query:  --------------------------------DSADSSTTNPSMDSPKPNNNS--LPKLFFAEWLAPNHHIAGGWSSGGSEF-----------DFEFGTS
                                        DSADSSTTNPS+ SPKPNNN+  LPKLFFAEWL       G   + GSEF           +FEFG +
Subjt:  --------------------------------DSADSSTTNPSMDSPKPNNNS--LPKLFFAEWLAPNHHIAGGWSSGGSEF-----------DFEFGTS

Query:  LGSELQ-----IMDSHVKFEDHN-SSGFANYASVGDVGVEQLLHFGNGFMN
        LGSEL      +MDSHVKFEDH+ S+GFANYAS GDV VE LLHFGNGFMN
Subjt:  LGSELQ-----IMDSHVKFEDHN-SSGFANYASVGDVGVEQLLHFGNGFMN

A0A6J1H3A8 transcription factor LAF1-like3.2e-1935.08Show/hide
Query:  MGCETASHRTKSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA------------------------------------------------------
        MG ETASH+   KHR+GLWSPEED+RLRN+IL HGH CWSS+P KA                                                      
Subjt:  MGCETASHRTKSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA------------------------------------------------------

Query:  ---------------------------------DSADSSTTNPSMDSPKPNNNSLPKLFFAEWLAPNHHIAGGWSSGGSEFDFEFGT-----------SL
                                         DSADSS T  SM+SPK      PKL FAEWLA       G   G S      GT            L
Subjt:  ---------------------------------DSADSSTTNPSMDSPKPNNNSLPKLFFAEWLAPNHHIAGGWSSGGSEFDFEFGT-----------SL

Query:  GSELQ-----IMDSHVKFEDHNSSGFANYASVGDVGVEQLLHFGNGFM
        GSE+Q     +MDSH+KFED   +G  NY       V+QLLHFGNGFM
Subjt:  GSELQ-----IMDSHVKFEDHNSSGFANYASVGDVGVEQLLHFGNGFM

A0A6J1JY47 transcription factor LAF1-like5.0e-2035.63Show/hide
Query:  MGCETASHRTKSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA------------------------------------------------------
        MG ETASH+ K KHR+GLWSPEED+RLRN+IL HGH CWSS+P KA                                                      
Subjt:  MGCETASHRTKSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA------------------------------------------------------

Query:  ---------------------------------DSADSSTTNPSMDSPKPNNNSLPKLFFAEWLAPNHHIAGGWSSGGSEFDFEFGT-----------SL
                                         +SADSS T  SMDSPK      PKL FAEWLA       G   G S      GT            L
Subjt:  ---------------------------------DSADSSTTNPSMDSPKPNNNSLPKLFFAEWLAPNHHIAGGWSSGGSEFDFEFGT-----------SL

Query:  GSELQ----IMDSHVKFEDHNSSGFANYASVGDVGVEQLLHFGNGFM
        GSE+Q    +MDSH+KFED   +G  NY       V+QLLHFGNGFM
Subjt:  GSELQ----IMDSHVKFEDHNSSGFANYASVGDVGVEQLLHFGNGFM

SwissProt top hitse value%identityAlignment
P20027 Myb-related protein Hv332.7e-0754.35Show/hide
Query:  MGCETASHRTKSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA
        MG  ++    + K R+GLWSPEEDE+L N+I++HG GCWSS+P  A
Subjt:  MGCETASHRTKSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA

Q8LPH6 Transcription factor MYB862.2e-0972.22Show/hide
Query:  KSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA
        K K R+GLWSPEEDE+L NYI +HGHGCWSS+P  A
Subjt:  KSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA

Q8VZQ2 Transcription factor MYB617.2e-0866.67Show/hide
Query:  KSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA
        K K R+GLWSPEEDE+L  +I  HGHGCWSS+P  A
Subjt:  KSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA

Q9M0K4 Transcription factor LAF12.5e-0864.71Show/hide
Query:  KHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA
        +HR+GLWSPEEDE+LR++IL +GH CW+++P KA
Subjt:  KHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA

Q9SPG3 Transcription factor MYB263.2e-0869.44Show/hide
Query:  KSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA
        K K +RGLWSPEEDE+L NYI  +GHGCWSS+P  A
Subjt:  KSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA

Arabidopsis top hitse value%identityAlignment
AT1G57560.1 myb domain protein 507.2e-1175Show/hide
Query:  KSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA
        K K R+GLWSPEEDE+L NYI KHGHGCWSS+P  A
Subjt:  KSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA

AT3G48920.1 myb domain protein 459.3e-1163.16Show/hide
Query:  RTKSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA
        ++K K R+GLWSPEEDE+LR+++LK+GHGCWS++P +A
Subjt:  RTKSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA

AT4G01680.1 myb domain protein 557.9e-1069.44Show/hide
Query:  KSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA
        K K R+GLWSPEEDE+L  YI K+GHGCWSS+P +A
Subjt:  KSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA

AT4G01680.2 myb domain protein 557.9e-1069.44Show/hide
Query:  KSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA
        K K R+GLWSPEEDE+L  YI K+GHGCWSS+P +A
Subjt:  KSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA

AT5G26660.1 myb domain protein 861.6e-1072.22Show/hide
Query:  KSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA
        K K R+GLWSPEEDE+L NYI +HGHGCWSS+P  A
Subjt:  KSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTGTGAAACGGCGTCGCATAGGACAAAGTCGAAGCACAGAAGAGGGTTATGGTCGCCTGAGGAAGATGAGAGGCTGAGAAATTACATCCTCAAGCATGGCCATGG
CTGTTGGAGTTCTCTTCCTTCCAAGGCCGACTCCGCAGATTCCTCAACAACAAATCCATCCATGGACTCTCCTAAACCCAACAACAACTCTCTCCCCAAACTCTTCTTCG
CCGAGTGGCTCGCTCCCAACCACCATATTGCCGGTGGCTGGAGTAGCGGTGGATCAGAGTTTGATTTCGAGTTTGGGACGAGTTTGGGTTCCGAGCTTCAAATCATGGAT
TCTCATGTGAAGTTTGAGGATCACAATTCAAGTGGCTTTGCCAATTATGCTTCTGTTGGGGATGTGGGTGTTGAACAACTTCTGCATTTTGGGAATGGTTTTATGAATAA
TATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTGTGAAACGGCGTCGCATAGGACAAAGTCGAAGCACAGAAGAGGGTTATGGTCGCCTGAGGAAGATGAGAGGCTGAGAAATTACATCCTCAAGCATGGCCATGG
CTGTTGGAGTTCTCTTCCTTCCAAGGCCGACTCCGCAGATTCCTCAACAACAAATCCATCCATGGACTCTCCTAAACCCAACAACAACTCTCTCCCCAAACTCTTCTTCG
CCGAGTGGCTCGCTCCCAACCACCATATTGCCGGTGGCTGGAGTAGCGGTGGATCAGAGTTTGATTTCGAGTTTGGGACGAGTTTGGGTTCCGAGCTTCAAATCATGGAT
TCTCATGTGAAGTTTGAGGATCACAATTCAAGTGGCTTTGCCAATTATGCTTCTGTTGGGGATGTGGGTGTTGAACAACTTCTGCATTTTGGGAATGGTTTTATGAATAA
TATTTGA
Protein sequenceShow/hide protein sequence
MGCETASHRTKSKHRRGLWSPEEDERLRNYILKHGHGCWSSLPSKADSADSSTTNPSMDSPKPNNNSLPKLFFAEWLAPNHHIAGGWSSGGSEFDFEFGTSLGSELQIMD
SHVKFEDHNSSGFANYASVGDVGVEQLLHFGNGFMNNI