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HG10010941 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10010941
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDNA-directed RNA polymerase II subunit RPB2
Genome locationChr01:666404..666675
RNA-Seq ExpressionHG10010941
SyntenyHG10010941
Gene Ontology termsGO:0032774 - RNA biosynthetic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_016903560.1 PREDICTED: uncharacterized protein LOC103503490 [Cucumis melo]2.8e-1991.94Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSDSSSSSETPQS
        M KSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG S SD  SSSETPQS
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSDSSSSSETPQS
XP_022156252.1 uncharacterized protein LOC111023182 [Momordica charantia]3.7e-1992.98Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSDSSSSS
        MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG+SNSDSS ++
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSDSSSSS
XP_022973256.1 uncharacterized protein LOC111471813 [Cucurbita maxima]1.1e-1890.16Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSDSSSSSETPQ
        MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG+SN    SSS TPQ
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSDSSSSSETPQ
XP_023553989.1 uncharacterized protein LOC111811404 [Cucurbita pepo subsp. pepo]1.6e-1991.8Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSDSSSSSETPQ
        MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG+S+SDSSS+  TPQ
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSDSSSSSETPQ
XP_038888236.1 uncharacterized protein LOC120078095 [Benincasa hispida]3.9e-2196.77Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSD-SSSSSETPQ
        MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLI DLRRGTSNSD SSSSSETPQ
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSD-SSSSSETPQ
TrEMBL top hitse value%identityAlignment
A0A1S4E6G4 uncharacterized protein LOC1035034901.4e-1991.94Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSDSSSSSETPQS
        M KSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG S SD  SSSETPQS
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSDSSSSSETPQS
A0A5A7TAA3 Putative membrane lipoprotein1.4e-1991.94Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSDSSSSSETPQS
        M KSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG S SD  SSSETPQS
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSDSSSSSETPQS
A0A6J1DRK3 uncharacterized protein LOC1110231821.8e-1992.98Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSDSSSSS
        MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG+SNSDSS ++
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSDSSSSS
A0A6J1F0E3 uncharacterized protein LOC1114380561.5e-1887.93Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSDSSSSSE
        MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG+SN  SS++ +
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSDSSSSSE
A0A6J1I859 uncharacterized protein LOC1114718135.2e-1990.16Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSDSSSSSETPQ
        MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG+SN    SSS TPQ
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSDSSSSSETPQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G17085.1 Putative membrane lipoprotein4.8e-1771.93Show/hide
Query:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSDSSSSS
        M+KSF+LIQT+A +G FSA+S WYGFMFGRESARK+LG LI++LRRG SNSDS+  S
Subjt:  MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSDSSSSS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAATCCTTCACTCTGATTCAGACAATTGCGACTGCTGGAGCCTTCTCTGCGATTTCATTCTGGTATGGTTTCATGTTTGGAAGAGAGTCCGCTCGAAAAGACTT
GGGAGATTTGATTCAAGATCTACGCCGAGGAACCTCAAACTCCGATTCTTCTTCTTCTTCTGAAACGCCTCAGTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAATCCTTCACTCTGATTCAGACAATTGCGACTGCTGGAGCCTTCTCTGCGATTTCATTCTGGTATGGTTTCATGTTTGGAAGAGAGTCCGCTCGAAAAGACTT
GGGAGATTTGATTCAAGATCTACGCCGAGGAACCTCAAACTCCGATTCTTCTTCTTCTTCTGAAACGCCTCAGTCTTGA
Protein sequenceShow/hide protein sequence
MEKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSNSDSSSSSETPQS