; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10010960 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10010960
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptioncytochrome c oxidase subunit 6b-3-like
Genome locationChr01:968921..972691
RNA-Seq ExpressionHG10010960
SyntenyHG10010960
Gene Ontology termsGO:0005739 - mitochondrion (cellular component)
GO:0045277 - respiratory chain complex IV (cellular component)
InterPro domainsIPR036549 - Cytochrome c oxidase, subunit VIb superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008465918.1 PREDICTED: putative cytochrome c oxidase subunit 6b-like [Cucumis melo]3.1e-4173.28Show/hide
Query:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGNDDRRRGG---EDKDNKVVVDEGRLETAPTDLRFPFTNQTRHCY
        MSA+Q+DPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQT    NDD RR G   +DKDNKVV+DEG +ETAP+DLRFPFTNQTRHCY
Subjt:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGNDDRRRGG---EDKDNKVVVDEGRLETAPTDLRFPFTNQTRHCY

Query:  ARYLEYHRL--RSGTSKGNSASFLVRYKVVC
        ARYLEYHR   + G        F   Y+ +C
Subjt:  ARYLEYHRL--RSGTSKGNSASFLVRYKVVC

XP_022932983.1 cytochrome c oxidase subunit 6b-3-like [Cucurbita moschata]5.7e-3568.97Show/hide
Query:  RSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGNDDRRRGGEDKDNKVVVDEGRLETAPTDLRFPFTNQTRHCYARYLEYHR--LRSGT
        R RD+SKVARGEQAPRP HEYGTVSKPPPPSS+S  SAQTNLDGN DRR GG+DKD+KVVV+EG +ETAP D+RFPFTNQTRHCY RYLEYH    + G 
Subjt:  RSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGNDDRRRGGEDKDNKVVVDEGRLETAPTDLRFPFTNQTRHCYARYLEYHR--LRSGT

Query:  SKGNSASFLVRYKVVC
               F   Y+ +C
Subjt:  SKGNSASFLVRYKVVC

XP_031737980.1 putative cytochrome c oxidase subunit 6b-like isoform X1 [Cucumis sativus]1.4e-4475.19Show/hide
Query:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGN-DDRRRGGEDKDNKVVVDEGRLETAPTDLRFPFTNQTRHCYAR
        MSA+Q+DPHDKMRSRD+SKVARGEQAPRPAHEYGTVSKPPPPSS+SVPSAQTNLDGN DDRRRG ED+DNKVV+DEG + TAP+D+RFPFTNQTRHCYAR
Subjt:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGN-DDRRRGGEDKDNKVVVDEGRLETAPTDLRFPFTNQTRHCYAR

Query:  YLEYHRL--RSGTSKGNSASFLVRYKVVC
        YLEYHR   + G        F   Y+ +C
Subjt:  YLEYHRL--RSGTSKGNSASFLVRYKVVC

XP_031737981.1 cytochrome c oxidase subunit 6B isoform X2 [Cucumis sativus]1.4e-4475.19Show/hide
Query:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGN-DDRRRGGEDKDNKVVVDEGRLETAPTDLRFPFTNQTRHCYAR
        MSA+Q+DPHDKMRSRD+SKVARGEQAPRPAHEYGTVSKPPPPSS+SVPSAQTNLDGN DDRRRG ED+DNKVV+DEG + TAP+D+RFPFTNQTRHCYAR
Subjt:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGN-DDRRRGGEDKDNKVVVDEGRLETAPTDLRFPFTNQTRHCYAR

Query:  YLEYHRL--RSGTSKGNSASFLVRYKVVC
        YLEYHR   + G        F   Y+ +C
Subjt:  YLEYHRL--RSGTSKGNSASFLVRYKVVC

XP_038886888.1 putative cytochrome c oxidase subunit 6b-like [Benincasa hispida]1.5e-4377.52Show/hide
Query:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGN-DDRRRGGEDKDNKVVVDEGRLETAPTDLRFPFTNQTRHCYAR
        MSAAQVDPHDKMRSRD+SKV RGEQAPRPAHEYGTVSKPPPPSS+SVPSAQTNLDGN DDRRRGGED DNK   DEG LETAP DLRFPFTNQTRHCYAR
Subjt:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGN-DDRRRGGEDKDNKVVVDEGRLETAPTDLRFPFTNQTRHCYAR

Query:  YLEYHRL--RSGTSKGNSASFLVRYKVVC
        YLEYHR   + G        F   Y+ +C
Subjt:  YLEYHRL--RSGTSKGNSASFLVRYKVVC

TrEMBL top hitse value%identityAlignment
A0A0A0LEH8 Uncharacterized protein6.6e-4575.19Show/hide
Query:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGN-DDRRRGGEDKDNKVVVDEGRLETAPTDLRFPFTNQTRHCYAR
        MSA+Q+DPHDKMRSRD+SKVARGEQAPRPAHEYGTVSKPPPPSS+SVPSAQTNLDGN DDRRRG ED+DNKVV+DEG + TAP+D+RFPFTNQTRHCYAR
Subjt:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGN-DDRRRGGEDKDNKVVVDEGRLETAPTDLRFPFTNQTRHCYAR

Query:  YLEYHRL--RSGTSKGNSASFLVRYKVVC
        YLEYHR   + G        F   Y+ +C
Subjt:  YLEYHRL--RSGTSKGNSASFLVRYKVVC

A0A1S3CQ05 putative cytochrome c oxidase subunit 6b-like1.5e-4173.28Show/hide
Query:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGNDDRRRGG---EDKDNKVVVDEGRLETAPTDLRFPFTNQTRHCY
        MSA+Q+DPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQT    NDD RR G   +DKDNKVV+DEG +ETAP+DLRFPFTNQTRHCY
Subjt:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGNDDRRRGG---EDKDNKVVVDEGRLETAPTDLRFPFTNQTRHCY

Query:  ARYLEYHRL--RSGTSKGNSASFLVRYKVVC
        ARYLEYHR   + G        F   Y+ +C
Subjt:  ARYLEYHRL--RSGTSKGNSASFLVRYKVVC

A0A5D3E4S8 Putative cytochrome c oxidase subunit 6b-like1.5e-4173.28Show/hide
Query:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGNDDRRRGG---EDKDNKVVVDEGRLETAPTDLRFPFTNQTRHCY
        MSA+Q+DPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQT    NDD RR G   +DKDNKVV+DEG +ETAP+DLRFPFTNQTRHCY
Subjt:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGNDDRRRGG---EDKDNKVVVDEGRLETAPTDLRFPFTNQTRHCY

Query:  ARYLEYHRL--RSGTSKGNSASFLVRYKVVC
        ARYLEYHR   + G        F   Y+ +C
Subjt:  ARYLEYHRL--RSGTSKGNSASFLVRYKVVC

A0A6J1F3D0 cytochrome c oxidase subunit 6b-3-like2.8e-3568.97Show/hide
Query:  RSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGNDDRRRGGEDKDNKVVVDEGRLETAPTDLRFPFTNQTRHCYARYLEYHR--LRSGT
        R RD+SKVARGEQAPRP HEYGTVSKPPPPSS+S  SAQTNLDGN DRR GG+DKD+KVVV+EG +ETAP D+RFPFTNQTRHCY RYLEYH    + G 
Subjt:  RSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGNDDRRRGGEDKDNKVVVDEGRLETAPTDLRFPFTNQTRHCYARYLEYHR--LRSGT

Query:  SKGNSASFLVRYKVVC
               F   Y+ +C
Subjt:  SKGNSASFLVRYKVVC

A0A6J1IE20 cytochrome c oxidase subunit 6b-3-like5.4e-3164.96Show/hide
Query:  RSRDVSKVARGEQAPRPAHEYGTVSKPPPP-SSTSVPSAQTNLDGNDDRRRGGEDKDNKVVVDEGRLETAPTDLRFPFTNQTRHCYARYLEYHRL--RSG
        R RD+SKVARGEQAPRP HEYGTVSKPPPP SS+S  SAQTNLDGN + R GG+D+  KVVV+EG +ETAP D+RFPFTNQTRHCY RYLEYH    + G
Subjt:  RSRDVSKVARGEQAPRPAHEYGTVSKPPPP-SSTSVPSAQTNLDGNDDRRRGGEDKDNKVVVDEGRLETAPTDLRFPFTNQTRHCYARYLEYHRL--RSG

Query:  TSKGNSASFLVRYKVVC
                F   Y+ +C
Subjt:  TSKGNSASFLVRYKVVC

SwissProt top hitse value%identityAlignment
P00429 Cytochrome c oxidase subunit 6B15.4e-0445.83Show/hide
Query:  ETAPTDLRFPFTNQTRHCYARYLEYHRL-RSGTSKGNSASFLVRYKVV
        +TAP D RFP  NQTR+C+  YL++HR  ++ T+KG   S    Y+ V
Subjt:  ETAPTDLRFPFTNQTRHCYARYLEYHRL-RSGTSKGNSASFLVRYKVV

Q945L0 Cytochrome c oxidase subunit 6b-26.2e-0847.27Show/hide
Query:  DEGRLETAPTDLRFPFTNQTRHCYARYLEYHRLRS--GTSKGNSASFLVRYKVVC
        DE  L+TAP D RFP TNQTRHC+ RY+E+HR  +  G    +   F   Y+ +C
Subjt:  DEGRLETAPTDLRFPFTNQTRHCYARYLEYHRLRS--GTSKGNSASFLVRYKVVC

Q9LPJ2 Putative cytochrome c oxidase subunit 6b-like2.3e-1849.52Show/hide
Query:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGNDDRRRGGEDKDNKVVVDEGRLETAPTDLRFPFTNQTRHCYARY
        MS+AQ+DPHDKMRSRD+SKVARG+QAPRPAH  GTVS PP   +T              R + G         D GR   A  + RFP TN+TRHC+ R+
Subjt:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGNDDRRRGGEDKDNKVVVDEGRLETAPTDLRFPFTNQTRHCYARY

Query:  LEYHR
        ++YH+
Subjt:  LEYHR

Q9S7L9 Cytochrome c oxidase subunit 6b-16.8e-0734.86Show/hide
Query:  RGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGNDDRRRGGEDKDNKVVVDEGRLETAPTDLRFPFTNQTRHCYARYLEYHRLRSGTSKGNSA----S
        + E AP         S+ P  +  +        + N+D     E  +     DE +LETAP D RFP TNQTRHC+ RY+EYHR  +  +KG+ A     
Subjt:  RGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGNDDRRRGGEDKDNKVVVDEGRLETAPTDLRFPFTNQTRHCYARYLEYHRLRSGTSKGNSA----S

Query:  FLVRYKVVC
        F   Y+ +C
Subjt:  FLVRYKVVC

Q9SUD3 Cytochrome c oxidase subunit 6b-32.8e-0850.88Show/hide
Query:  DEGRLETAPTDLRFPFTNQTRHCYARYLEYHRLRSGTSKGNSAS----FLVRYKVVC
        DE  L+TAP D RFP TNQTRHC+ RY+E+HR    T+KG  A+    F   Y+ +C
Subjt:  DEGRLETAPTDLRFPFTNQTRHCYARYLEYHRLRSGTSKGNSAS----FLVRYKVVC

Arabidopsis top hitse value%identityAlignment
AT1G22450.1 cytochrome C oxidase 6B4.9e-0834.86Show/hide
Query:  RGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGNDDRRRGGEDKDNKVVVDEGRLETAPTDLRFPFTNQTRHCYARYLEYHRLRSGTSKGNSA----S
        + E AP         S+ P  +  +        + N+D     E  +     DE +LETAP D RFP TNQTRHC+ RY+EYHR  +  +KG+ A     
Subjt:  RGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGNDDRRRGGEDKDNKVVVDEGRLETAPTDLRFPFTNQTRHCYARYLEYHRLRSGTSKGNSA----S

Query:  FLVRYKVVC
        F   Y+ +C
Subjt:  FLVRYKVVC

AT1G32710.1 Cytochrome c oxidase, subunit Vib family protein1.6e-1949.52Show/hide
Query:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGNDDRRRGGEDKDNKVVVDEGRLETAPTDLRFPFTNQTRHCYARY
        MS+AQ+DPHDKMRSRD+SKVARG+QAPRPAH  GTVS PP   +T              R + G         D GR   A  + RFP TN+TRHC+ R+
Subjt:  MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGNDDRRRGGEDKDNKVVVDEGRLETAPTDLRFPFTNQTRHCYARY

Query:  LEYHR
        ++YH+
Subjt:  LEYHR

AT4G28060.1 Cytochrome c oxidase, subunit Vib family protein2.0e-0950.88Show/hide
Query:  DEGRLETAPTDLRFPFTNQTRHCYARYLEYHRLRSGTSKGNSAS----FLVRYKVVC
        DE  L+TAP D RFP TNQTRHC+ RY+E+HR    T+KG  A+    F   Y+ +C
Subjt:  DEGRLETAPTDLRFPFTNQTRHCYARYLEYHRLRSGTSKGNSAS----FLVRYKVVC

AT5G57815.1 Cytochrome c oxidase, subunit Vib family protein4.4e-0947.27Show/hide
Query:  DEGRLETAPTDLRFPFTNQTRHCYARYLEYHRLRS--GTSKGNSASFLVRYKVVC
        DE  L+TAP D RFP TNQTRHC+ RY+E+HR  +  G    +   F   Y+ +C
Subjt:  DEGRLETAPTDLRFPFTNQTRHCYARYLEYHRLRS--GTSKGNSASFLVRYKVVC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGCGGCTCAGGTAGATCCTCACGACAAGATGAGATCCAGAGACGTAAGCAAGGTGGCACGTGGCGAGCAAGCCCCAAGGCCAGCTCACGAATACGGCACCGTTTC
GAAGCCTCCGCCGCCTTCTTCCACCTCCGTTCCCTCCGCTCAGACCAACCTCGACGGTAACGACGATCGCCGCCGCGGAGGCGAAGACAAAGACAATAAGGTGGTAGTGG
ATGAGGGACGATTAGAGACAGCGCCAACTGACCTTCGTTTTCCTTTCACTAATCAAACACGTCATTGCTATGCACGCTATTTGGAATACCATAGATTGAGAAGTGGAACG
AGCAAAGGAAACTCGGCGTCTTTCCTGGTCCGATATAAGGTTGTGTGTGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGCGGCTCAGGTAGATCCTCACGACAAGATGAGATCCAGAGACGTAAGCAAGGTGGCACGTGGCGAGCAAGCCCCAAGGCCAGCTCACGAATACGGCACCGTTTC
GAAGCCTCCGCCGCCTTCTTCCACCTCCGTTCCCTCCGCTCAGACCAACCTCGACGGTAACGACGATCGCCGCCGCGGAGGCGAAGACAAAGACAATAAGGTGGTAGTGG
ATGAGGGACGATTAGAGACAGCGCCAACTGACCTTCGTTTTCCTTTCACTAATCAAACACGTCATTGCTATGCACGCTATTTGGAATACCATAGATTGAGAAGTGGAACG
AGCAAAGGAAACTCGGCGTCTTTCCTGGTCCGATATAAGGTTGTGTGTGAATAA
Protein sequenceShow/hide protein sequence
MSAAQVDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTNLDGNDDRRRGGEDKDNKVVVDEGRLETAPTDLRFPFTNQTRHCYARYLEYHRLRSGT
SKGNSASFLVRYKVVCE