CuGenDBv2

Gene ID	HG10011038
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	reticulocalbin-2 isoform X1
Genome location	Chr01:1799480..1800736
RNA-Seq Expression	HG10011038
Synteny	HG10011038
Gene Ontology terms	GO:0005783 - endoplasmic reticulum (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005509 - calcium ion binding (molecular function)
InterPro domains	IPR002048 - EF-hand domain IPR011992 - EF-hand domain pair IPR018247 - EF-Hand 1, calcium-binding site

Homology

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GenBank top hits

e value

%identity

Alignment

TYK11288.1 reticulocalbin-2 [Cucumis melo var. makuwa]

5.3e-80

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Query:  MGRVVVYVLITTVFAAFFLFSPSNLQDQKHQELTRRLGFKFRTPTFDPLVADMERLAEERELGSQGKAIAKGNHQVPDAYRHYYDEGRLNISLRLLVLFP
        MG+ VVYVL  T FA FFL SPSN  ++ +Q+ TRRLGFKF  PTFDPLV +MERL E  E G     +   NH++ DAYR+YYDEGRLNISLRLLVLFP
Subjt:  MGRVVVYVLITTVFAAFFLFSPSNLQDQKHQELTRRLGFKFRTPTFDPLVADMERLAEERELGSQGKAIAKGNHQVPDAYRHYYDEGRLNISLRLLVLFP

Query:  LLDHSPKDGGIGYEELSDWITGQAIERLNYRTRKQLAFYDKNGDGAISFHEYLPKFTEEDIARNETGYGEAGWWRKQFTNADVDQNGLLNFDELKE
        LLD+SPKDG I YEELSDWI GQAIERLNYRT KQL FYDKNGD AISFHEYLP+FT+EDIARN+TGYGEAGWW KQFTNADVDQNGLL+FDELK+
Subjt:  LLDHSPKDGGIGYEELSDWITGQAIERLNYRTRKQLAFYDKNGDGAISFHEYLPKFTEEDIARNETGYGEAGWWRKQFTNADVDQNGLLNFDELKE

XP_008455987.1 PREDICTED: reticulocalbin-2 [Cucumis melo]

4.0e-80

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Query:  MGRVVVYVLITTVFAAFFLFSPSNLQDQKHQELTRRLGFKFRTPTFDPLVADMERLAEERELGSQGKAIAKGNHQVPDAYRHYYDEGRLNISLRLLVLFP
        MG+ VVYVL  T FA FFL SPSN   + +Q+ TRRLGFKF  PTFDPLV +MERL E  E G     +   NH++ DAYR+YYD+GRLNISLRLLVLFP
Subjt:  MGRVVVYVLITTVFAAFFLFSPSNLQDQKHQELTRRLGFKFRTPTFDPLVADMERLAEERELGSQGKAIAKGNHQVPDAYRHYYDEGRLNISLRLLVLFP

Query:  LLDHSPKDGGIGYEELSDWITGQAIERLNYRTRKQLAFYDKNGDGAISFHEYLPKFTEEDIARNETGYGEAGWWRKQFTNADVDQNGLLNFDELKE
        LLD+SPKDG I YEELSDWI GQAIERLNYRT KQL FYDKNGD AISFHEYLP+FT+EDIARNETGYGEAGWW KQFTNADVDQNGLL+FDELK+
Subjt:  LLDHSPKDGGIGYEELSDWITGQAIERLNYRTRKQLAFYDKNGDGAISFHEYLPKFTEEDIARNETGYGEAGWWRKQFTNADVDQNGLLNFDELKE

XP_011651314.1 reticulocalbin-2 [Cucumis sativus]

5.6e-82

77.04

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Query:  MGRVVVYVLITTVFAAFFLFSPSNLQDQKHQELTRRLGFKFRTPTFDPLVADMERLAEERELGSQGKAIAKGNHQVPDAYRHYYDEGRLNISLRLLVLFP
        MG+ VVYVL  TVFA FFL SPSN  ++ HQ+ TRRLGFKF  PTFDPLV +MERLA E E G     +   NH++ D+YR+YYDEGRLNISLRLLVLFP
Subjt:  MGRVVVYVLITTVFAAFFLFSPSNLQDQKHQELTRRLGFKFRTPTFDPLVADMERLAEERELGSQGKAIAKGNHQVPDAYRHYYDEGRLNISLRLLVLFP

Query:  LLDHSPKDGGIGYEELSDWITGQAIERLNYRTRKQLAFYDKNGDGAISFHEYLPKFTEEDIARNETGYGEAGWWRKQFTNADVDQNGLLNFDELKE
        LLD+SPKDG I YEELSDWI GQAIERLNYRT KQL FYDKNGD AISFHEYLP+FTEEDIARNETGYGEAGWWRKQFTNADVD NGLL FDELK+
Subjt:  LLDHSPKDGGIGYEELSDWITGQAIERLNYRTRKQLAFYDKNGDGAISFHEYLPKFTEEDIARNETGYGEAGWWRKQFTNADVDQNGLLNFDELKE

XP_022968155.1 calumenin-B isoform X1 [Cucurbita maxima]

2.8e-81

73.87

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Query:  MGRVVVYVLITTVFAAFFLFSPSNLQDQKHQELTRRLGFKFRTPTFDPLVADMERLAEERELGSQGKAIA---KGNHQVPDAYRHYYDEGRLNISLRLLV
        MGR VVYVLI   FAAFF+FSPS+L D+  QELTRRLG+KFRTPTFDPLVA++ER+AEERELGS+G AI        ++P+AYR+  DEGRLNIS RL+V
Subjt:  MGRVVVYVLITTVFAAFFLFSPSNLQDQKHQELTRRLGFKFRTPTFDPLVADMERLAEERELGSQGKAIA---KGNHQVPDAYRHYYDEGRLNISLRLLV

Query:  LFPLLDHSPKDGGIGYEELSDWITGQAIERLNYRTRKQLAFYDKNGDGAISFHEYLPKFTEEDIARNETGYGEAGWWRKQFTNADVDQNGLLNFDELKE
        LFPL+DHSPKDG I YEE+S+WIT Q I++LN RTR++LAFYDKNGDGAISFHEYLP+F+EEDIARNETG+G+AGWW++QFTNADVD NGLLNFDELK+
Subjt:  LFPLLDHSPKDGGIGYEELSDWITGQAIERLNYRTRKQLAFYDKNGDGAISFHEYLPKFTEEDIARNETGYGEAGWWRKQFTNADVDQNGLLNFDELKE

XP_038880351.1 calumenin-B [Benincasa hispida]

2.1e-89

84.18

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Query:  MGRVVVYVLITTVFAAFFLFSPSNLQDQKHQELTRRLGFKFRTPTFDPLVADMERLAEERELGSQGKAIAKGNHQVPDAYRHYYDEGRLNISLRLLVLFP
        MGR V YVLI+T FAAFFLFSPSNLQD KHQEL+RRLGFKFRTPTFDPL A+MERLAEE  +G + +  AK N QV D  +HYYDEG LNISLRLLVLFP
Subjt:  MGRVVVYVLITTVFAAFFLFSPSNLQDQKHQELTRRLGFKFRTPTFDPLVADMERLAEERELGSQGKAIAKGNHQVPDAYRHYYDEGRLNISLRLLVLFP

Query:  LLDHSPKDGGIGYEELSDWITGQAIERLNYRTRKQLAFYDKNGDGAISFHEYLPKFTEEDIARNETGYGEAGWWRKQFTNADVDQNGLLNFDELKE
        LLDHSPKDG I YEELSDWITGQAIERLNYRT KQLAF DKNGDGAISFHEYLP+FTEEDIARNETGYGEAGWWRKQFTNADVDQN LLNFDELK+
Subjt:  LLDHSPKDGGIGYEELSDWITGQAIERLNYRTRKQLAFYDKNGDGAISFHEYLPKFTEEDIARNETGYGEAGWWRKQFTNADVDQNGLLNFDELKE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LAH3 Uncharacterized protein

2.7e-82

77.04

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Query:  MGRVVVYVLITTVFAAFFLFSPSNLQDQKHQELTRRLGFKFRTPTFDPLVADMERLAEERELGSQGKAIAKGNHQVPDAYRHYYDEGRLNISLRLLVLFP
        MG+ VVYVL  TVFA FFL SPSN  ++ HQ+ TRRLGFKF  PTFDPLV +MERLA E E G     +   NH++ D+YR+YYDEGRLNISLRLLVLFP
Subjt:  MGRVVVYVLITTVFAAFFLFSPSNLQDQKHQELTRRLGFKFRTPTFDPLVADMERLAEERELGSQGKAIAKGNHQVPDAYRHYYDEGRLNISLRLLVLFP

Query:  LLDHSPKDGGIGYEELSDWITGQAIERLNYRTRKQLAFYDKNGDGAISFHEYLPKFTEEDIARNETGYGEAGWWRKQFTNADVDQNGLLNFDELKE
        LLD+SPKDG I YEELSDWI GQAIERLNYRT KQL FYDKNGD AISFHEYLP+FTEEDIARNETGYGEAGWWRKQFTNADVD NGLL FDELK+
Subjt:  LLDHSPKDGGIGYEELSDWITGQAIERLNYRTRKQLAFYDKNGDGAISFHEYLPKFTEEDIARNETGYGEAGWWRKQFTNADVDQNGLLNFDELKE

A0A1S3C255 reticulocalbin-2

2.0e-80

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Query:  MGRVVVYVLITTVFAAFFLFSPSNLQDQKHQELTRRLGFKFRTPTFDPLVADMERLAEERELGSQGKAIAKGNHQVPDAYRHYYDEGRLNISLRLLVLFP
        MG+ VVYVL  T FA FFL SPSN   + +Q+ TRRLGFKF  PTFDPLV +MERL E  E G     +   NH++ DAYR+YYD+GRLNISLRLLVLFP
Subjt:  MGRVVVYVLITTVFAAFFLFSPSNLQDQKHQELTRRLGFKFRTPTFDPLVADMERLAEERELGSQGKAIAKGNHQVPDAYRHYYDEGRLNISLRLLVLFP

Query:  LLDHSPKDGGIGYEELSDWITGQAIERLNYRTRKQLAFYDKNGDGAISFHEYLPKFTEEDIARNETGYGEAGWWRKQFTNADVDQNGLLNFDELKE
        LLD+SPKDG I YEELSDWI GQAIERLNYRT KQL FYDKNGD AISFHEYLP+FT+EDIARNETGYGEAGWW KQFTNADVDQNGLL+FDELK+
Subjt:  LLDHSPKDGGIGYEELSDWITGQAIERLNYRTRKQLAFYDKNGDGAISFHEYLPKFTEEDIARNETGYGEAGWWRKQFTNADVDQNGLLNFDELKE

A0A5A7U5L5 Reticulocalbin-2

2.0e-80

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Query:  MGRVVVYVLITTVFAAFFLFSPSNLQDQKHQELTRRLGFKFRTPTFDPLVADMERLAEERELGSQGKAIAKGNHQVPDAYRHYYDEGRLNISLRLLVLFP
        MG+ VVYVL  T FA FFL SPSN   + +Q+ TRRLGFKF  PTFDPLV +MERL E  E G     +   NH++ DAYR+YYD+GRLNISLRLLVLFP
Subjt:  MGRVVVYVLITTVFAAFFLFSPSNLQDQKHQELTRRLGFKFRTPTFDPLVADMERLAEERELGSQGKAIAKGNHQVPDAYRHYYDEGRLNISLRLLVLFP

Query:  LLDHSPKDGGIGYEELSDWITGQAIERLNYRTRKQLAFYDKNGDGAISFHEYLPKFTEEDIARNETGYGEAGWWRKQFTNADVDQNGLLNFDELKE
        LLD+SPKDG I YEELSDWI GQAIERLNYRT KQL FYDKNGD AISFHEYLP+FT+EDIARNETGYGEAGWW KQFTNADVDQNGLL+FDELK+
Subjt:  LLDHSPKDGGIGYEELSDWITGQAIERLNYRTRKQLAFYDKNGDGAISFHEYLPKFTEEDIARNETGYGEAGWWRKQFTNADVDQNGLLNFDELKE

A0A5D3CJD2 Reticulocalbin-2

2.6e-80

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Query:  MGRVVVYVLITTVFAAFFLFSPSNLQDQKHQELTRRLGFKFRTPTFDPLVADMERLAEERELGSQGKAIAKGNHQVPDAYRHYYDEGRLNISLRLLVLFP
        MG+ VVYVL  T FA FFL SPSN  ++ +Q+ TRRLGFKF  PTFDPLV +MERL E  E G     +   NH++ DAYR+YYDEGRLNISLRLLVLFP
Subjt:  MGRVVVYVLITTVFAAFFLFSPSNLQDQKHQELTRRLGFKFRTPTFDPLVADMERLAEERELGSQGKAIAKGNHQVPDAYRHYYDEGRLNISLRLLVLFP

Query:  LLDHSPKDGGIGYEELSDWITGQAIERLNYRTRKQLAFYDKNGDGAISFHEYLPKFTEEDIARNETGYGEAGWWRKQFTNADVDQNGLLNFDELKE
        LLD+SPKDG I YEELSDWI GQAIERLNYRT KQL FYDKNGD AISFHEYLP+FT+EDIARN+TGYGEAGWW KQFTNADVDQNGLL+FDELK+
Subjt:  LLDHSPKDGGIGYEELSDWITGQAIERLNYRTRKQLAFYDKNGDGAISFHEYLPKFTEEDIARNETGYGEAGWWRKQFTNADVDQNGLLNFDELKE

A0A6J1HWE3 calumenin-B isoform X1

1.4e-81

73.87

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Query:  MGRVVVYVLITTVFAAFFLFSPSNLQDQKHQELTRRLGFKFRTPTFDPLVADMERLAEERELGSQGKAIA---KGNHQVPDAYRHYYDEGRLNISLRLLV
        MGR VVYVLI   FAAFF+FSPS+L D+  QELTRRLG+KFRTPTFDPLVA++ER+AEERELGS+G AI        ++P+AYR+  DEGRLNIS RL+V
Subjt:  MGRVVVYVLITTVFAAFFLFSPSNLQDQKHQELTRRLGFKFRTPTFDPLVADMERLAEERELGSQGKAIA---KGNHQVPDAYRHYYDEGRLNISLRLLV

Query:  LFPLLDHSPKDGGIGYEELSDWITGQAIERLNYRTRKQLAFYDKNGDGAISFHEYLPKFTEEDIARNETGYGEAGWWRKQFTNADVDQNGLLNFDELKE
        LFPL+DHSPKDG I YEE+S+WIT Q I++LN RTR++LAFYDKNGDGAISFHEYLP+F+EEDIARNETG+G+AGWW++QFTNADVD NGLLNFDELK+
Subjt:  LFPLLDHSPKDGGIGYEELSDWITGQAIERLNYRTRKQLAFYDKNGDGAISFHEYLPKFTEEDIARNETGYGEAGWWRKQFTNADVDQNGLLNFDELKE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G27790.1 Calcium-binding EF hand family protein

9.4e-43

41.84

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Query:  MGRVVVYVLITT--VFAAFFLFSPSNLQDQKHQELTRRLGFKFRTPTFDPLVADMERLAEERELGSQGKAIAKGNHQVPDAYRHYY-DEGRLNISLRLLV
        M +VVVY ++T   +F         N        +TRR+G +   P FDPLV  +ERL+ E+E G+  K +     +  D +  Y+  E RLN ++R+  
Subjt:  MGRVVVYVLITT--VFAAFFLFSPSNLQDQKHQELTRRLGFKFRTPTFDPLVADMERLAEERELGSQGKAIAKGNHQVPDAYRHYY-DEGRLNISLRLLV

Query:  LFPLLDHSPKDGGIGYEELSDWITGQAIERLNYRTRKQLAFYDKNGDGAISFHEYLPKFTEEDIARNETGYGEAGWWRKQFTNADVDQNGLLNFDE
        LFPLLD SP+DG +  +EL  W+  Q  + + YRT K+L   DK+ DG I+F EYLP+F+++DI +NE G+GEAGWW +QF N+D D NG L+ +E
Subjt:  LFPLLDHSPKDGGIGYEELSDWITGQAIERLNYRTRKQLAFYDKNGDGAISFHEYLPKFTEEDIARNETGYGEAGWWRKQFTNADVDQNGLLNFDE

AT5G08580.1 Calcium-binding EF hand family protein

5.7e-24

31.62

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Query:  VVVYVLITTVFAAFFLFSPSNLQD--------QKHQELTRRLGFKFRTPT------FDPLVADMERLAEERELGSQ--------------------GKAI
        V++Y+ +  +      +SP    D         +H  L  R  F F+ PT      FDPLVADMER  E++E   Q                    G   
Subjt:  VVVYVLITTVFAAFFLFSPSNLQD--------QKHQELTRRLGFKFRTPT------FDPLVADMERLAEERELGSQ--------------------GKAI

Query:  AKGNHQVP------DAYRHYYDEGRLNISLRLLVLFPLLDHSPKDGGIGYEELSDWITGQAIERLNYRTRKQLAFYDKNGDGAISFHEYLPKFTEEDIAR
        A G+   P      DA  +  DE + N++ RL++LFP +D SP DG +   EL++W    + + + +RT++ L  +D+N DG ISF EY P         
Subjt:  AKGNHQVP------DAYRHYYDEGRLNISLRLLVLFPLLDHSPKDGGIGYEELSDWITGQAIERLNYRTRKQLAFYDKNGDGAISFHEYLPKFTEEDIAR

Query:  NETGYGEAGWWRKQFTNA-DVDQNGLLNFDELKE
        N  GY + GWW+++  NA D + +GLLN  E  +
Subjt:  NETGYGEAGWWRKQFTNA-DVDQNGLLNFDELKE

Sequences

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CDS sequence

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ATGGGGAGGGTGGTGGTTTATGTTCTTATAACCACCGTCTTCGCCGCCTTCTTCCTATTTTCTCCGTCCAATTTGCAGGATCAGAAGCATCAAGAACTAACTCGTCGCCT
AGGTTTCAAATTCCGAACCCCTACTTTTGACCCTCTTGTCGCAGATATGGAAAGATTAGCAGAGGAACGTGAATTAGGAAGCCAAGGAAAAGCGATTGCGAAGGGAAATC
ATCAGGTTCCTGATGCTTACAGACATTACTACGATGAAGGGAGATTGAACATTTCATTGAGGCTGCTGGTGTTGTTTCCTTTGCTGGACCATTCGCCAAAAGATGGGGGT
ATCGGTTACGAGGAGTTGAGCGATTGGATTACTGGGCAAGCCATTGAAAGATTGAATTACAGAACGCGCAAACAATTGGCGTTCTATGACAAGAATGGAGATGGCGCCAT
TTCATTCCACGAATATCTCCCGAAGTTCACAGAAGAAGATATTGCAAGAAATGAAACGGGGTATGGAGAAGCTGGATGGTGGAGAAAGCAATTCACAAATGCCGATGTTG
ACCAAAATGGCTTATTAAATTTTGATGAACTGAAAGAGTAA

mRNA sequence

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Protein sequence

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MGRVVVYVLITTVFAAFFLFSPSNLQDQKHQELTRRLGFKFRTPTFDPLVADMERLAEERELGSQGKAIAKGNHQVPDAYRHYYDEGRLNISLRLLVLFPLLDHSPKDGG
IGYEELSDWITGQAIERLNYRTRKQLAFYDKNGDGAISFHEYLPKFTEEDIARNETGYGEAGWWRKQFTNADVDQNGLLNFDELKE

HG10011038 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome