; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10011041 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10011041
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNA-binding family protein isoform 2
Genome locationChr01:1823481..1832086
RNA-Seq ExpressionHG10011041
SyntenyHG10011041
Gene Ontology termsGO:0003729 - mRNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily
IPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050536.1 RNA-binding protein 2-like isoform X1 [Cucumis melo var. makuwa]2.8e-10696.48Show/hide
Query:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL
        MSDAYWRYTDSQQQPPSSVP VVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLR+SQISSYGGQSARPVGGGVPGH +NDPPIL
Subjt:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL

Query:  GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQD
        GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESR+ GRDPVVLGFVDFVSPAHAATAMDALQ+
Subjt:  GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQD

TYK11272.1 RNA-binding protein 2-like isoform X4 [Cucumis melo var. makuwa]1.2e-10685.9Show/hide
Query:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL
        MSDAYWRYTDSQQQPPSSVP VVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLR+SQISSYGGQSARPVGGGVPGH +NDPPIL
Subjt:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL

Query:  GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQ--
        GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESR+ GRDPVVLGFVDFVSPAHAATAMDALQ  
Subjt:  GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQ--

Query:  -DGKIAN-RNLPEDILFVGFPEPRNRTSSNLLLE
         D K+   +NL  D +        +R S  L+L+
Subjt:  -DGKIAN-RNLPEDILFVGFPEPRNRTSSNLLLE

XP_038897625.1 RNA-binding protein 2-like isoform X1 [Benincasa hispida]5.0e-10898.01Show/hide
Query:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL
        MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYD TGLHELPNYY RQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL
Subjt:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL

Query:  GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQDG
        GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQ  
Subjt:  GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQDG

Query:  K
        K
Subjt:  K

XP_038897633.1 RNA-binding protein 2-like isoform X2 [Benincasa hispida]5.0e-10898.49Show/hide
Query:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL
        MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYD TGLHELPNYY RQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL
Subjt:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL

Query:  GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQD
        GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQ+
Subjt:  GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQD

XP_038897644.1 RNA-binding protein 2-like isoform X3 [Benincasa hispida]8.6e-10898.99Show/hide
Query:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL
        MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYD TGLHELPNYY RQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL
Subjt:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL

Query:  GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQ
        GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQ
Subjt:  GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQ

TrEMBL top hitse value%identityAlignment
A0A1S3C2A8 RNA-binding protein 2-like isoform X41.3e-10696.48Show/hide
Query:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL
        MSDAYWRYTDSQQQPPSSVP VVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLR+SQISSYGGQSARPVGGGVPGH +NDPPIL
Subjt:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL

Query:  GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQD
        GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESR+ GRDPVVLGFVDFVSPAHAATAMDALQ+
Subjt:  GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQD

A0A1S3C2W2 RNA-binding protein 2-like isoform X11.3e-10696.48Show/hide
Query:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL
        MSDAYWRYTDSQQQPPSSVP VVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLR+SQISSYGGQSARPVGGGVPGH +NDPPIL
Subjt:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL

Query:  GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQD
        GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESR+ GRDPVVLGFVDFVSPAHAATAMDALQ+
Subjt:  GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQD

A0A1S3C3F7 RNA-binding protein 2-like isoform X21.3e-10696.02Show/hide
Query:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL
        MSDAYWRYTDSQQQPPSSVP VVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLR+SQISSYGGQSARPVGGGVPGH +NDPPIL
Subjt:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL

Query:  GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQDG
        GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESR+ GRDPVVLGFVDFVSPAHAATAMDALQ  
Subjt:  GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQDG

Query:  K
        K
Subjt:  K

A0A5A7U8N8 RNA-binding protein 2-like isoform X11.3e-10696.48Show/hide
Query:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL
        MSDAYWRYTDSQQQPPSSVP VVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLR+SQISSYGGQSARPVGGGVPGH +NDPPIL
Subjt:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL

Query:  GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQD
        GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESR+ GRDPVVLGFVDFVSPAHAATAMDALQ+
Subjt:  GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQD

A0A5D3CIZ5 RNA-binding protein 2-like isoform X46.0e-10785.9Show/hide
Query:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL
        MSDAYWRYTDSQQQPPSSVP VVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLR+SQISSYGGQSARPVGGGVPGH +NDPPIL
Subjt:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPIL

Query:  GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQ--
        GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESR+ GRDPVVLGFVDFVSPAHAATAMDALQ  
Subjt:  GIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQ--

Query:  -DGKIAN-RNLPEDILFVGFPEPRNRTSSNLLLE
         D K+   +NL  D +        +R S  L+L+
Subjt:  -DGKIAN-RNLPEDILFVGFPEPRNRTSSNLLLE

SwissProt top hitse value%identityAlignment
A1A6K6 Nuclear speckle RNA-binding protein A3.2e-3344.98Show/hide
Query:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYD----TTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSIN-
        M+D YW     Q  PP        KRPR D++    T  +     YYPR +D  V        +I  +Y+RYL+S Q    G  S    GGG  G   N 
Subjt:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYD----TTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSIN-

Query:  ---DPPILGIGGVVS-GANVNDRSTSFGGGRP--NIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAH
           D  +L  GGV+      N  +  F    P     LP DASNTL+VEGLPS+C+RREVAHIFRPFVGY+EVRLV K+S++   DP+VL FVDF +PA 
Subjt:  ---DPPILGIGGVVS-GANVNDRSTSFGGGRP--NIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAH

Query:  AATAMDALQ
        AATA+ ALQ
Subjt:  AATAMDALQ

F4HWF9 Nuclear speckle RNA-binding protein B4.0e-3142.16Show/hide
Query:  ELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGG----------GVPGHSINDPPILGIGG-VVSGANVNDRSTSFG-------
        ++ +Y  + +DR +   +K   SI  +Y+RYL+S Q      + A P  G           +PG S+ +  + G GG + S    N R   FG       
Subjt:  ELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGG----------GVPGHSINDPPILGIGG-VVSGANVNDRSTSFG-------

Query:  GGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQDGKIANRNLPEDILFVGF---
         GR   PLPPD SNTL+VEGLPS+C+RREV+HIFRPFVGY+EVRLV ++S++   DP VL FVDF + A AATA+ ALQD ++        IL + F   
Subjt:  GGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQDGKIANRNLPEDILFVGF---

Query:  PEPR
        P PR
Subjt:  PEPR

G7ID19 RNA-binding protein 26.1e-4042Show/hide
Query:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDT-----TGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVG--------G
        M+D +W     Q  PP   P  + KRPR +YDT     T  +E+ NY  + +   +L   K + S   +Y+R+L+S+ ++S+    A  +G        G
Subjt:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDT-----TGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVG--------G

Query:  GVPGHSINDPPILG-IGGVVSGANV--NDRSTSFGG----------GRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGR
         +PGHS+ DP  +G + GV  G ++  N R  +FGG          G   IPLP DAS+TL+VEGLPS  T+REVAHIFRPFVGY+EVRLV KES++ G 
Subjt:  GVPGHSINDPPILG-IGGVVSGANV--NDRSTSFGG----------GRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGR

Query:  DPVVLGFVDFVSPAHAATAMDALQDGKIANRNLPEDILFVGFPEPRNRTS
        DP++L FVDF +PA AATA+ ALQ  K+   N     L + F     R S
Subjt:  DPVVLGFVDFVSPAHAATAMDALQDGKIANRNLPEDILFVGFPEPRNRTS

Q6JB11 Protein MATERNALLY EXPRESSED GENE 53.1e-2857.41Show/hide
Query:  GHSINDPPILGIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHA
        G+ ++   ++G+ G      ++ R   + GGRP  PLPPDAS+TL++EGLP++CTRREV+HIFRPFVG++EVRLVNKESR+PG DP VL FVDF +PA A
Subjt:  GHSINDPPILGIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHA

Query:  ATAMDALQ
          A++ALQ
Subjt:  ATAMDALQ

Q8H0P8 RNA-binding protein 11.2e-3542.63Show/hide
Query:  MSDAYWRYTDSQQQPPSSVP-AVVGKRPRVDYD--TTGL---HELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVG--------
        M+D YW    ++QQ  S +P + + KRPR DY+   +GL   +E+ +Y  R++DR     +K   +I  +Y+RYL+  Q+ S+    A  VG        
Subjt:  MSDAYWRYTDSQQQPPSSVP-AVVGKRPRVDYD--TTGL---HELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVG--------

Query:  GGVPGHSINDPPIL--GIGGVVSGANVNDRSTSFGGGRPNIP----------LPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGR
        GG+P HS++DP  +    GG       N R  ++G   P  P          LPPDAS TL++EGLPS CTRREVAHIFRPFVGY+EVRLV+KE+++ G 
Subjt:  GGVPGHSINDPPIL--GIGGVVSGANVNDRSTSFGGGRPNIP----------LPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGR

Query:  DPVVLGFVDFVSPAHAATAMDALQDGKIANRNLPED----ILFVGFPEPRN
        DP++L FVDF +PA AATA+ ALQ  K+   N PE     + F  +P PR+
Subjt:  DPVVLGFVDFVSPAHAATAMDALQDGKIANRNLPED----ILFVGFPEPRN

Arabidopsis top hitse value%identityAlignment
AT1G21320.1 nucleotide binding;nucleic acid binding2.8e-3242.16Show/hide
Query:  ELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGG----------GVPGHSINDPPILGIGG-VVSGANVNDRSTSFG-------
        ++ +Y  + +DR +   +K   SI  +Y+RYL+S Q      + A P  G           +PG S+ +  + G GG + S    N R   FG       
Subjt:  ELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGG----------GVPGHSINDPPILGIGG-VVSGANVNDRSTSFG-------

Query:  GGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQDGKIANRNLPEDILFVGF---
         GR   PLPPD SNTL+VEGLPS+C+RREV+HIFRPFVGY+EVRLV ++S++   DP VL FVDF + A AATA+ ALQD ++        IL + F   
Subjt:  GGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQDGKIANRNLPEDILFVGF---

Query:  PEPR
        P PR
Subjt:  PEPR

AT1G21320.2 nucleotide binding;nucleic acid binding2.2e-3741.46Show/hide
Query:  MSDAYWRYTDSQQQPPSSVPAVV-GKRPRVDYDTTGL----HELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGG--------
        M+D YW      Q P SS P V+  KRPR D+  T       ++ +Y  + +DR +   +K   SI  +Y+RYL+S Q      + A P  G        
Subjt:  MSDAYWRYTDSQQQPPSSVPAVV-GKRPRVDYDTTGL----HELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGG--------

Query:  --GVPGHSINDPPILGIGG-VVSGANVNDRSTSFG-------GGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPV
           +PG S+ +  + G GG + S    N R   FG        GR   PLPPD SNTL+VEGLPS+C+RREV+HIFRPFVGY+EVRLV ++S++   DP 
Subjt:  --GVPGHSINDPPILGIGG-VVSGANVNDRSTSFG-------GGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPV

Query:  VLGFVDFVSPAHAATAMDALQDGKIANRNLPEDILFVGF---PEPR
        VL FVDF + A AATA+ ALQD ++        IL + F   P PR
Subjt:  VLGFVDFVSPAHAATAMDALQDGKIANRNLPEDILFVGF---PEPR

AT1G76940.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.3e-3444.98Show/hide
Query:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYD----TTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSIN-
        M+D YW     Q  PP        KRPR D++    T  +     YYPR +D  V        +I  +Y+RYL+S Q    G  S    GGG  G   N 
Subjt:  MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYD----TTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSIN-

Query:  ---DPPILGIGGVVS-GANVNDRSTSFGGGRP--NIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAH
           D  +L  GGV+      N  +  F    P     LP DASNTL+VEGLPS+C+RREVAHIFRPFVGY+EVRLV K+S++   DP+VL FVDF +PA 
Subjt:  ---DPPILGIGGVVS-GANVNDRSTSFGGGRP--NIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAH

Query:  AATAMDALQ
        AATA+ ALQ
Subjt:  AATAMDALQ

AT1G76940.2 RNA-binding (RRM/RBD/RNP motifs) family protein9.7e-2552.67Show/hide
Query:  GGQSARP-----VGGGVPGHSIN--DPPILGIGGVVS-GANVNDRSTSFGGGRP--NIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNK
        GG   RP      GGG  G ++   D  +L  GGV+      N  +  F    P     LP DASNTL+VEGLPS+C+RREVAHIFRPFVGY+EVRLV K
Subjt:  GGQSARP-----VGGGVPGHSIN--DPPILGIGGVVS-GANVNDRSTSFGGGRP--NIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNK

Query:  ESRNPGRDPVVLGFVDFVSPAHAATAMDALQ
        +S++   DP+VL FVDF +PA AATA+ ALQ
Subjt:  ESRNPGRDPVVLGFVDFVSPAHAATAMDALQ

AT2G47580.1 spliceosomal protein U1A2.7e-0633.33Show/hide
Query:  GGGRPNIP-LPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQDGKIANRNL
        GG +PN+P  P   +N LFV+ LP   T   +  +F  + G+KEVR++  +   PG     + FV+F     +  AM  LQ  KI    +
Subjt:  GGGRPNIP-LPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQDGKIANRNL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGACGCTTATTGGAGGTACACCGACTCACAGCAGCAGCCTCCGTCGTCGGTTCCTGCTGTCGTCGGCAAGCGCCCTCGCGTTGATTACGATACCACTGGTCTTCA
CGAGTTGCCCAACTATTACCCTCGCCAAGATGATAGACCAGTTCTCCAAGGAATTAAAAGTGTTGATTCCATCAATGAGTCCTATGAACGTTACCTTCGCAGCTCGCAAA
TTTCATCTTATGGTGGACAGTCTGCTAGACCTGTTGGTGGGGGAGTTCCTGGTCATTCGATCAATGATCCACCTATATTGGGGATTGGGGGTGTGGTTTCAGGGGCAAAT
GTTAATGATAGAAGTACGAGCTTTGGAGGTGGGAGGCCTAACATACCCCTTCCACCTGATGCTTCTAATACACTATTTGTGGAAGGCTTGCCTTCCAGCTGTACACGGCG
TGAAGTAGCGCACATATTTCGCCCTTTTGTTGGCTACAAAGAAGTGAGACTTGTTAACAAGGAATCCAGAAATCCTGGAAGAGATCCAGTGGTGCTTGGTTTTGTAGATT
TTGTGAGTCCTGCCCATGCAGCCACGGCCATGGATGCCTTACAAGATGGAAAAATTGCCAACAGAAATCTGCCTGAAGATATTCTGTTTGTTGGATTCCCAGAACCTCGC
AACCGCACTTCAAGCAACCTGCTCCTTGAAGTTTGCAGGAAGTGGAACTCCTTAGCTTCAGACAATATCTTGTGGTTGAACTTATTCAAGGAGAGGTGGGGGGAAGACCA
TGCTGCATTTTATCAGCCAGATGGTTCGAAGTCGTGGAAGGAGTCATATGAGGTGCAAGATCGATGCGATCGATTTGGACTGGGACTAAGAATAATCCGAGAAGGGAATG
ACTACTACCTCATTCACCAAGGTGAAATCCAGAGGCACCTAGGTTCAAGAAGACAAAAGAATGGACAGACCAGTTTTCTTCCTTTGAGTTCAAAAAGAGAGTTCCTATCA
GAAGGACTTCTCGAAGAAGACAAATCCTGTCGAGGAATTCTGGACAGGATCCTTTTCTTCATTGGAGACTTGGAAGTTGCTTCAACAGATGCAAAGCGCAGCAGGTCTCT
GTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGACGCTTATTGGAGGTACACCGACTCACAGCAGCAGCCTCCGTCGTCGGTTCCTGCTGTCGTCGGCAAGCGCCCTCGCGTTGATTACGATACCACTGGTCTTCA
CGAGTTGCCCAACTATTACCCTCGCCAAGATGATAGACCAGTTCTCCAAGGAATTAAAAGTGTTGATTCCATCAATGAGTCCTATGAACGTTACCTTCGCAGCTCGCAAA
TTTCATCTTATGGTGGACAGTCTGCTAGACCTGTTGGTGGGGGAGTTCCTGGTCATTCGATCAATGATCCACCTATATTGGGGATTGGGGGTGTGGTTTCAGGGGCAAAT
GTTAATGATAGAAGTACGAGCTTTGGAGGTGGGAGGCCTAACATACCCCTTCCACCTGATGCTTCTAATACACTATTTGTGGAAGGCTTGCCTTCCAGCTGTACACGGCG
TGAAGTAGCGCACATATTTCGCCCTTTTGTTGGCTACAAAGAAGTGAGACTTGTTAACAAGGAATCCAGAAATCCTGGAAGAGATCCAGTGGTGCTTGGTTTTGTAGATT
TTGTGAGTCCTGCCCATGCAGCCACGGCCATGGATGCCTTACAAGATGGAAAAATTGCCAACAGAAATCTGCCTGAAGATATTCTGTTTGTTGGATTCCCAGAACCTCGC
AACCGCACTTCAAGCAACCTGCTCCTTGAAGTTTGCAGGAAGTGGAACTCCTTAGCTTCAGACAATATCTTGTGGTTGAACTTATTCAAGGAGAGGTGGGGGGAAGACCA
TGCTGCATTTTATCAGCCAGATGGTTCGAAGTCGTGGAAGGAGTCATATGAGGTGCAAGATCGATGCGATCGATTTGGACTGGGACTAAGAATAATCCGAGAAGGGAATG
ACTACTACCTCATTCACCAAGGTGAAATCCAGAGGCACCTAGGTTCAAGAAGACAAAAGAATGGACAGACCAGTTTTCTTCCTTTGAGTTCAAAAAGAGAGTTCCTATCA
GAAGGACTTCTCGAAGAAGACAAATCCTGTCGAGGAATTCTGGACAGGATCCTTTTCTTCATTGGAGACTTGGAAGTTGCTTCAACAGATGCAAAGCGCAGCAGGTCTCT
GTGA
Protein sequenceShow/hide protein sequence
MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPILGIGGVVSGAN
VNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQDGKIANRNLPEDILFVGFPEPR
NRTSSNLLLEVCRKWNSLASDNILWLNLFKERWGEDHAAFYQPDGSKSWKESYEVQDRCDRFGLGLRIIREGNDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSSKREFLS
EGLLEEDKSCRGILDRILFFIGDLEVASTDAKRSRSL