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HG10011048 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10011048
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionTranscription elongation factor 1 homolog
Genome locationChr01:1862082..1863169
RNA-Seq ExpressionHG10011048
SyntenyHG10011048
Gene Ontology termsGO:0006368 - transcription elongation from RNA polymerase II promoter (biological process)
GO:0006414 - translational elongation (biological process)
GO:0008023 - transcription elongation factor complex (cellular component)
GO:0000993 - RNA polymerase II complex binding (molecular function)
GO:0003746 - translation elongation factor activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007808 - Transcription elongation factor 1
IPR038567 - Transcription elongation factor 1 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7803378.1 transcription elongation factor 1-like protein [Senna tora]2.5e-3685.71Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVNTLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI  +   S    +YSEWIDECERVN LEDD A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVNTLEDDAA

XP_004146241.1 transcription elongation factor 1 homolog [Cucumis sativus]1.3e-3787.91Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVNTLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTIT +   S    +YSEWIDECERVN LEDDAA
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVNTLEDDAA

XP_010090451.1 transcription elongation factor 1 homolog isoform X1 [Morus notabilis]1.1e-3686.81Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVNTLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTIT +     I   YSEWIDECERVN LEDD A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVNTLEDDAA

XP_015899142.1 transcription elongation factor 1 homolog [Ziziphus jujuba]1.1e-3685.71Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVNTLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA CRICQESFSTTIT +   +    +YSEWIDECERVNTLEDD A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVNTLEDDAA

XP_038896920.1 transcription elongation factor 1 homolog [Benincasa hispida]1.0e-3782.29Show/hide
Query:  LTPREMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVNTLEDDAA
        ++ ++MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRID+KNLIGEASCRICQESFSTTIT +   S    +YSEWIDECERVN LEDDAA
Subjt:  LTPREMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVNTLEDDAA

TrEMBL top hitse value%identityAlignment
A0A0A0LAG5 Transcription elongation factor 1 homolog6.4e-3887.91Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVNTLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTIT +   S    +YSEWIDECERVN LEDDAA
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVNTLEDDAA

A0A1S3C2B7 Transcription elongation factor 1 homolog6.4e-3887.91Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVNTLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTIT +   S    +YSEWIDECERVN LEDDAA
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVNTLEDDAA

A0A2P5DXC0 Transcription elongation factor 1 homolog1.6e-3684.62Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVNTLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA+CRICQESFSTT+T +     I   YSEWIDECERVN LE+DAA
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVNTLEDDAA

A0A6P4AU33 Transcription elongation factor 1 homolog5.5e-3785.71Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVNTLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA CRICQESFSTTIT +   +    +YSEWIDECERVNTLEDD A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVNTLEDDAA

W9R774 Transcription elongation factor 1 homolog5.5e-3786.81Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVNTLEDDAA
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTIT +     I   YSEWIDECERVN LEDD A
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVNTLEDDAA

SwissProt top hitse value%identityAlignment
A4IFR3 Transcription elongation factor 1 homolog1.1e-1548.24Show/hide
Query:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVN
        MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T IT   + S    +YS+WID CE  N
Subjt:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVN

P36053 Transcription elongation factor 12.3e-1648.24Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVNT
        MGKRK   + P K+ + KLDT F+C FCNH  SV C +D KN IG  SC+IC +SF T I  +   S+   +YS+W D  E VN+
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVNT

P60002 Transcription elongation factor 1 homolog1.1e-1548.24Show/hide
Query:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVN
        MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T IT   + S    +YS+WID CE  N
Subjt:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVN

Q8LEF3 Transcription elongation factor 1 homolog2.4e-3476.4Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVNTLEDD
        MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+ESFSTTIT +   +    +YSEWIDECERVNT EDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVNTLEDD

Q8LHP0 Transcription elongation factor 1 homolog2.0e-3680.9Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVNTLEDD
        MGKRKS AKPPPKKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASCRICQE+FSTT+  +     I   YSEWIDECERVN +EDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVNTLEDD

Arabidopsis top hitse value%identityAlignment
AT5G46030.1 unknown protein1.7e-3576.4Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVNTLEDD
        MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+ESFSTTIT +   +    +YSEWIDECERVNT EDD
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVNTLEDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTTATGGATGTGGACGGACAGCCTTACGCCACGAGAAATGGGGAAACGCAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTT
TAGCTGTCCTTTCTGCAATCATGGGACCAGTGTCGAATGTCGCATTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTAGGATTTGCCAAGAAAGCTTTAGCACAACTA
TTACAGGTATTCTCTTTGAATCTCGCATTCGCTATCTATATAGTGAATGGATCGATGAATGTGAGCGGGTCAACACCCTTGAGGATGATGCTGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGTTATGGATGTGGACGGACAGCCTTACGCCACGAGAAATGGGGAAACGCAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTT
TAGCTGTCCTTTCTGCAATCATGGGACCAGTGTCGAATGTCGCATTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTAGGATTTGCCAAGAAAGCTTTAGCACAACTA
TTACAGGTATTCTCTTTGAATCTCGCATTCGCTATCTATATAGTGAATGGATCGATGAATGTGAGCGGGTCAACACCCTTGAGGATGATGCTGCCTAG
Protein sequenceShow/hide protein sequence
MLLWMWTDSLTPREMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITGILFESRIRYLYSEWIDECERVNTLEDDAA