CuGenDBv2

Gene ID	HG10011062
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	S4 RNA-binding domain-containing protein
Genome location	Chr01:1998540..2004009
RNA-Seq Expression	HG10011062
Synteny	HG10011062
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR002942 - RNA-binding S4 domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR017506 - Photosystem II S4 IPR036986 - RNA-binding S4 domain superfamily IPR040591 - YlmH, putative RNA-binding domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6600381.1 hypothetical protein SDJN03_05614, partial [Cucurbita argyrosperma subsp. sororia]

1.1e-159

92.24

Show/hide

Query:  AATSIGALWSLRRAAQSSSFRSPLAVNLNNLSFHEARFPSSPSSPSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
        A  SIGALWSLRRAAQSSSFR+PLA+NL  +SFHEARF   PSSPSSPLG+SG+CQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
Subjt:  AATSIGALWSLRRAAQSSSFRSPLAVNLNNLSFHEARFPSSPSSPSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
        NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPD++SALSITGNF FH C+HGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI

Query:  VPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIISVSGKGR
        VPELVDFLVSSLRKVGNVTVSCTRIPLT LDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVD IS GDVRVNWT ITKNGTILKTGDI+SVSGKGR
Subjt:  VPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIISVSGKGR

Query:  LKIGEINSTKKGKFAVELIRYV
        LKIGEIN TKKGKFA+ELI+YV
Subjt:  LKIGEINSTKKGKFAVELIRYV

XP_022142743.1 uncharacterized protein LOC111012786 isoform X1 [Momordica charantia]

2.5e-159

92.57

Show/hide

Query:  MAATSIGALWSLRRAAQSSSFRSPLAVNLNNLSFHEARFPSSPSSPSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLH
        MAATSIGALWSLRRAAQ+SSFR PLA+   NLSFH+ARFP SPSSP    GSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLH
Subjt:  MAATSIGALWSLRRAAQSSSFRSPLAVNLNNLSFHEARFPSSPSSPSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLH

Query:  TNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVV
        TNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLG+ILGTGIAREKLGDIILQ E GAQVV
Subjt:  TNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVV

Query:  IVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIISVSGKG
        +VPELVDFL+SSLRKVGNVTVSCTRIPLTALDYEPPKTKTF TIEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWTP+TKNGT LKTGD++SVSGKG
Subjt:  IVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIISVSGKG

Query:  RLKIGEINSTKKGKFAVELIRYV
        RLKIGEINSTKKGKF+VELIRYV
Subjt:  RLKIGEINSTKKGKFAVELIRYV

XP_022981895.1 uncharacterized protein LOC111480897 isoform X1 [Cucurbita maxima]

5.5e-159

92.55

Show/hide

Query:  AATSIGALWSLRRAAQSSSFRSPLAVNLNNLSFHEARFPSSPSSPSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
        A  SIGALWSLRRAAQSSS R+PLAVNL+ +SFHEARF   P+SPSSPLGSSG+CQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
Subjt:  AATSIGALWSLRRAAQSSSFRSPLAVNLNNLSFHEARFPSSPSSPSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
        NFLTPPVVKESMLAI+KLADVKAIAQGGYPEAERCRISVGHADELTSDPD++SALSITGNF FH C+HGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI

Query:  VPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIISVSGKGR
        VPELVDFLVSSL KVGNVTVSCTRIPLT LDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVD ISSGDVRVNWT ITKNGTILKTGDI+SVSGKGR
Subjt:  VPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIISVSGKGR

Query:  LKIGEINSTKKGKFAVELIRYV
        LKIGEIN TKKGKFAVELIRYV
Subjt:  LKIGEINSTKKGKFAVELIRYV

XP_023554595.1 uncharacterized protein LOC111811761 isoform X1 [Cucurbita pepo subsp. pepo]

9.4e-159

92.24

Show/hide

Query:  AATSIGALWSLRRAAQSSSFRSPLAVNLNNLSFHEARFPSSPSSPSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
        A  SIGALWSLRRA  SSSFR+PLAVNL+ +SFHEARF   PSSPSSPLG+SG+CQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
Subjt:  AATSIGALWSLRRAAQSSSFRSPLAVNLNNLSFHEARFPSSPSSPSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
        NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDI+SALSITGNF FH C+HGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI

Query:  VPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIISVSGKGR
        VPELVDFLVSSLRKVGNVTVSCTRIPLT LDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVD IS GDVRVNWT ITKNGTILKTGDI+SVSGKGR
Subjt:  VPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIISVSGKGR

Query:  LKIGEINSTKKGKFAVELIRYV
        LKIGEIN TKKGKFA+ELI+YV
Subjt:  LKIGEINSTKKGKFAVELIRYV

XP_038899605.1 putative RNA-binding protein YlmH [Benincasa hispida]

6.7e-165

95.67

Show/hide

Query:  MAATSIGALWSLRRAAQSSSFRSPLAVNLNNLSFHEARFPSSPSSPSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLH
        MAATSIGA WSLRRAAQSSSFRSPLAVNLN LSFHEARF   PSSPSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRR VLH
Subjt:  MAATSIGALWSLRRAAQSSSFRSPLAVNLNNLSFHEARFPSSPSSPSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLH

Query:  TNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVV
        TNFLTPPVVKES+LA+QKLADVKAIAQGGYPEAERCRISVGHADEL SDPDI+SALSITGNF FHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVV
Subjt:  TNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVV

Query:  IVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIISVSGKG
        +VPELVDFL SSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDI+SVSGKG
Subjt:  IVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIISVSGKG

Query:  RLKIGEINSTKKGKFAVELIRYV
        RLKIGEINSTKKGKFAVELIRYV
Subjt:  RLKIGEINSTKKGKFAVELIRYV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LC56 S4 RNA-binding domain-containing protein

1.7e-158

92.83

Show/hide

Query:  ATSIGALWSLRRAAQSSSFRSPLAVNLNNLSFHEARFPSSPSSPSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTN
        ATSI ALWSLRRAAQ SSFR PLA+NLN L F+EARF      PSSPLG+SGICQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTN
Subjt:  ATSIGALWSLRRAAQSSSFRSPLAVNLNNLSFHEARFPSSPSSPSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTN

Query:  FLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIV
        FLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLG+ILGTGIAREKLGDI+LQEE GAQVVIV
Subjt:  FLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIV

Query:  PELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIISVSGKGRL
        PELVDFL+SSLRKVGNVTVSCTRIPLTAL+YEPPKTKTFKTIEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWT ITKNGTILKTGDI+SVSGKGRL
Subjt:  PELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIISVSGKGRL

Query:  KIGEINSTKKGKFAVELIRYV
        KIGEINSTKKGKFAVELIRYV
Subjt:  KIGEINSTKKGKFAVELIRYV

A0A1S3C3I2 putative RNA-binding protein YlmH isoform X2

3.9e-158

92.5

Show/hide

Query:  TSIGALWSLRRAAQSSSFRSPLAVNLNNLSFHEARFPSSPSSPSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNF
        T+IGALWSLR A+Q SSFR PL VNLN L FHE RF      PSSPLG+SGICQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNF
Subjt:  TSIGALWSLRRAAQSSSFRSPLAVNLNNLSFHEARFPSSPSSPSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNF

Query:  LTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVP
        LTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGH+DELTSDPDIISALSITGNFTFHPCSHGDFLG+ILGTGIAREKLGDII+QEE GAQVVIVP
Subjt:  LTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVP

Query:  ELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIISVSGKGRLK
        ELVDFL+SSLRKVGNVTVSCTRIPLTAL+YEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDI+SVSGKGRLK
Subjt:  ELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIISVSGKGRLK

Query:  IGEINSTKKGKFAVELIRYV
        IGEINSTKKGKFAVELIRYV
Subjt:  IGEINSTKKGKFAVELIRYV

A0A6J1CP18 uncharacterized protein LOC111012786 isoform X1

1.2e-159

92.57

Show/hide

Query:  MAATSIGALWSLRRAAQSSSFRSPLAVNLNNLSFHEARFPSSPSSPSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLH
        MAATSIGALWSLRRAAQ+SSFR PLA+   NLSFH+ARFP SPSSP    GSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLH
Subjt:  MAATSIGALWSLRRAAQSSSFRSPLAVNLNNLSFHEARFPSSPSSPSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLH

Query:  TNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVV
        TNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLG+ILGTGIAREKLGDIILQ E GAQVV
Subjt:  TNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVV

Query:  IVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIISVSGKG
        +VPELVDFL+SSLRKVGNVTVSCTRIPLTALDYEPPKTKTF TIEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWTP+TKNGT LKTGD++SVSGKG
Subjt:  IVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIISVSGKG

Query:  RLKIGEINSTKKGKFAVELIRYV
        RLKIGEINSTKKGKF+VELIRYV
Subjt:  RLKIGEINSTKKGKFAVELIRYV

A0A6J1FU11 uncharacterized protein LOC111446880 isoform X2

1.0e-158

91.93

Show/hide

Query:  AATSIGALWSLRRAAQSSSFRSPLAVNLNNLSFHEARFPSSPSSPSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
        A  SIGALWSLRRAA+SSSFR+PLAVNL  +SFHEARF   PSSPSSPLG+SG+CQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
Subjt:  AATSIGALWSLRRAAQSSSFRSPLAVNLNNLSFHEARFPSSPSSPSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
        NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPD++SALSITGNF F  C+HGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI

Query:  VPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIISVSGKGR
        VPELVDFLVSSLRKVGNVTVSCTRIPLT LDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVD IS GDVRVNWT ITKNGTILKTGDI+SVSGKGR
Subjt:  VPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIISVSGKGR

Query:  LKIGEINSTKKGKFAVELIRYV
        LKIGEIN TKKGKFA+ELI+YV
Subjt:  LKIGEINSTKKGKFAVELIRYV

A0A6J1J103 uncharacterized protein LOC111480897 isoform X1

2.7e-159

92.55

Show/hide

Query:  AATSIGALWSLRRAAQSSSFRSPLAVNLNNLSFHEARFPSSPSSPSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
        A  SIGALWSLRRAAQSSS R+PLAVNL+ +SFHEARF   P+SPSSPLGSSG+CQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
Subjt:  AATSIGALWSLRRAAQSSSFRSPLAVNLNNLSFHEARFPSSPSSPSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
        NFLTPPVVKESMLAI+KLADVKAIAQGGYPEAERCRISVGHADELTSDPD++SALSITGNF FH C+HGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI

Query:  VPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIISVSGKGR
        VPELVDFLVSSL KVGNVTVSCTRIPLT LDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVD ISSGDVRVNWT ITKNGTILKTGDI+SVSGKGR
Subjt:  VPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIISVSGKGR

Query:  LKIGEINSTKKGKFAVELIRYV
        LKIGEIN TKKGKFAVELIRYV
Subjt:  LKIGEINSTKKGKFAVELIRYV

SwissProt top hits

e value

%identity

Alignment

P71020 Putative RNA-binding protein YlmH

4.0e-19

30.67

Show/hide

Query:  TNFLTPPVVKESML--AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDI-ISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGA
        T+FL P   +E ++  A+   ADV     GGY  AER R  +        + D  + A ++     F    H   LGA++G G+ R+K GDI+   E   
Subjt:  TNFLTPPVVKESML--AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDI-ISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGA

Query:  QVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIISVS
        Q+++  +  DF+ + L + G   VS  +I L+ L+      +      +SLR+DA+ ++  + SR K   L+ +G V+VNW  +     I+  GD++S+ 
Subjt:  QVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIISVS

Query:  GKGRLKIGEI-NSTKKGKFAVELIR
        G GR  + +I   TKK K+ V   R
Subjt:  GKGRLKIGEI-NSTKKGKFAVELIR

Arabidopsis top hits

e value

%identity

Alignment

AT1G53120.1 RNA-binding S4 domain-containing protein

3.9e-118

67.48

Show/hide

Query:  MAATSIGALWSLRRAAQSSSFRSPLAVNLNNLSFHEARFPSSPSSPSS-PLGSSGI--CQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRRE
        MA TS+   W + R A    FRS  A +   L  ++    ++ S P+S PL  S +  C   +A+KGD+D LL GVGD+ V  +VK IL MA+R+ S+RE
Subjt:  MAATSIGALWSLRRAAQSSSFRSPLAVNLNNLSFHEARFPSSPSSPSS-PLGSSGI--CQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRRE

Query:  VLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGA
        VLHT+FLTPP+VKES+  ++K ADVK +AQGGYPEAERCRIS+GH D LTSDPDI++ALSITGNF F PCSHGDFLGAILGTGI+REKLGDI++QEEKGA
Subjt:  VLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGA

Query:  QVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIISVS
        QV+IVPELVDF+V++L KVGNV V+C++IPL AL+YEPP+T +FKT+EASLR+DA+ASAGFKISRSKLVDLISS DVRVNW  +TKNGTI+KTGD++SVS
Subjt:  QVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIISVS

Query:  GKGRLKIGEINSTKKGKFAVELIRYV
        GKGRLKIGEIN TKKGKFAVE+IRY+
Subjt:  GKGRLKIGEINSTKKGKFAVELIRYV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCCGCAACGAGCATTGGAGCTCTGTGGAGTCTGAGAAGAGCAGCTCAATCTTCGAGTTTCCGAAGCCCCCTTGCCGTTAACCTCAATAATCTCTCCTTCCACGAGGC
CCGATTTCCCTCTTCTCCCTCTTCTCCCTCTTCTCCTCTGGGGTCCTCAGGAATATGCCAATTAGTGCAAGCTGTAAAGGGAGATATTGATGTTTTACTCAACGGAGTTG
GAGATAAGGGTGTTATTGTAGACGTGAAACATATTCTTGTGATGGCCAAACGTTCATTATCAAGACGAGAAGTTCTCCATACAAACTTTCTCACCCCACCTGTGGTGAAA
GAGTCAATGCTAGCTATACAAAAACTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGCAGAACGCTGCCGGATTTCTGTTGGGCATGCAGATGAACTAAC
AAGTGATCCAGACATAATTTCAGCATTGAGTATCACAGGAAATTTTACGTTTCACCCTTGCTCACATGGGGACTTCCTTGGAGCAATTCTTGGAACAGGCATTGCCAGGG
AAAAGCTTGGTGATATCATACTCCAGGAAGAAAAGGGAGCTCAAGTAGTCATTGTTCCAGAACTTGTTGACTTCCTGGTATCATCACTGCGCAAGGTTGGCAATGTCACG
GTTTCTTGTACGAGGATTCCATTGACAGCTCTTGATTATGAACCACCGAAGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTGGATGCTCTAGCAAGTGCTGG
ATTTAAGATTTCAAGATCTAAACTAGTGGATTTAATCAGTAGCGGCGATGTTCGTGTCAATTGGACGCCAATTACAAAAAATGGAACCATTTTAAAGACTGGTGATATCA
TTTCTGTTAGTGGAAAAGGGAGACTAAAGATTGGAGAAATAAATTCAACAAAAAAGGGAAAATTTGCGGTTGAGCTTATCAGGTATGTGTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MAATSIGALWSLRRAAQSSSFRSPLAVNLNNLSFHEARFPSSPSSPSSPLGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVK
ESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVT
VSCTRIPLTALDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIISVSGKGRLKIGEINSTKKGKFAVELIRYV

HG10011062 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome