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HG10011076 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10011076
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description60S ribosomal protein L30
Genome locationChr01:2137905..2138141
RNA-Seq ExpressionHG10011076
SyntenyHG10011076
Gene Ontology termsGO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR004038 - Ribosomal protein L7Ae/L30e/S12e/Gadd45
IPR022991 - Ribosomal protein L30e, conserved site
IPR029064 - 50S ribosomal protein L30e-like
IPR039109 - Ribosomal protein L30/YlxQ


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBO8589876.1 ribosomal L7Ae/L30e/S12e/Gadd45 family protein [Staphylococcus aureus]3.7e-1671.05Show/hide
Query:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIATTALHSESLRSNTMRCWQRLEFTITTE
        MVAAKKTKK HESINNRLALVMKSGKYTLGYKTVLK+LR+SKGKLIIIA               C QRLEF I  E
Subjt:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIATTALHSESLRSNTMRCWQRLEFTITTE

TYI76307.1 hypothetical protein E1A91_D06G067000v1 [Gossypium mustelinum]7.9e-1975.32Show/hide
Query:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIATTALHSESLRSNTMRCWQRLEFTITTEA
        MVAAKKTKK HESIN RLALVMKSGKYTLGYKTVLK+LR+SKGKLIIIA   L   S RS+ M C  +LEFT T EA
Subjt:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIATTALHSESLRSNTMRCWQRLEFTITTEA

XP_004251199.1 60S ribosomal protein L30 [Solanum lycopersicum]5.3e-1597.96Show/hide
Query:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA
        MVAAKKTKK HESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA
Subjt:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA

XP_008451087.1 PREDICTED: 60S ribosomal protein L30 [Cucumis melo]5.3e-1597.96Show/hide
Query:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA
        MVAAKKTKK HESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA
Subjt:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA

XP_009631814.1 60S ribosomal protein L30-like [Nicotiana tomentosiformis]5.3e-1597.96Show/hide
Query:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA
        MVAAKKTKK HESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA
Subjt:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA

TrEMBL top hitse value%identityAlignment
A0A0V0GYL7 Putative ovule protein2.6e-1597.96Show/hide
Query:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA
        MVAAKKTKK HESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA
Subjt:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA

A0A1S3X2T9 60S ribosomal protein L30-like2.6e-1597.96Show/hide
Query:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA
        MVAAKKTKK HESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA
Subjt:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA

A0A5D2UFA5 Ribosomal_L7Ae domain-containing protein3.8e-1975.32Show/hide
Query:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIATTALHSESLRSNTMRCWQRLEFTITTEA
        MVAAKKTKK HESIN RLALVMKSGKYTLGYKTVLK+LR+SKGKLIIIA   L   S RS+ M C  +LEFT T EA
Subjt:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIATTALHSESLRSNTMRCWQRLEFTITTEA

A0A5D3CI16 60S ribosomal protein L302.6e-1597.96Show/hide
Query:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA
        MVAAKKTKK HESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA
Subjt:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA

A0A6J1JJ11 60S ribosomal protein L30-like2.6e-1597.96Show/hide
Query:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA
        MVAAKKTKK HESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA
Subjt:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA

SwissProt top hitse value%identityAlignment
O49884 60S ribosomal protein L307.6e-1793.88Show/hide
Query:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA
        MVAAKKTKK HESINNRLALVMKSGKYTLGYKTVLK+LR+SKGKLIIIA
Subjt:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA

Q8VZ19 60S ribosomal protein L30-26.1e-1480Show/hide
Query:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIAT
        MV  KKTKK HE IN+RLALVMKSGKYTLGYK+VLK+LR SKGKLI+I+T
Subjt:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIAT

Q9C8F7 Putative 60S ribosomal protein L30-11.2e-1482Show/hide
Query:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIAT
        MVAAKKTKK HE IN+RLALVMKSGKYTLGYK+VLK+LR+SKGKLI+I++
Subjt:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIAT

Q9LSA3 60S ribosomal protein L30-31.8e-1378Show/hide
Query:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIAT
        MVA KK KK HE IN+RLALVMKSGKYTLGYK+VLK+LR+SKGKLI+I++
Subjt:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIAT

Q9M5M6 60S ribosomal protein L305.5e-1585.71Show/hide
Query:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA
        MVAAKKTKK HESIN+RLALVMKSGK+TLGYKTVL++LR++KGKLIIIA
Subjt:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIA

Arabidopsis top hitse value%identityAlignment
AT1G36240.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein8.7e-1682Show/hide
Query:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIAT
        MVAAKKTKK HE IN+RLALVMKSGKYTLGYK+VLK+LR+SKGKLI+I++
Subjt:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIAT

AT1G77940.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein4.3e-1580Show/hide
Query:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIAT
        MV  KKTKK HE IN+RLALVMKSGKYTLGYK+VLK+LR SKGKLI+I+T
Subjt:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIAT

AT3G18740.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein1.3e-1478Show/hide
Query:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIAT
        MVA KK KK HE IN+RLALVMKSGKYTLGYK+VLK+LR+SKGKLI+I++
Subjt:  MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIAT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGCCGCAAAGAAGACGAAGAAGATCCATGAGAGCATCAACAACAGACTCGCTCTCGTCATGAAGAGTGGGAAATATACCTTGGGATACAAAACCGTCCTCAAAAC
CTTGAGGAACTCTAAAGGTAAGCTAATTATCATTGCCACAACTGCCCTCCACTCCGAAAGTCTGAGATCGAATACTATGCGATGTTGGCAAAGGTTGGAGTTCACCATTA
CAACGGAAGCAATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGGCCGCAAAGAAGACGAAGAAGATCCATGAGAGCATCAACAACAGACTCGCTCTCGTCATGAAGAGTGGGAAATATACCTTGGGATACAAAACCGTCCTCAAAAC
CTTGAGGAACTCTAAAGGTAAGCTAATTATCATTGCCACAACTGCCCTCCACTCCGAAAGTCTGAGATCGAATACTATGCGATGTTGGCAAAGGTTGGAGTTCACCATTA
CAACGGAAGCAATGTAG
Protein sequenceShow/hide protein sequence
MVAAKKTKKIHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIATTALHSESLRSNTMRCWQRLEFTITTEAM