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HG10011103 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10011103
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionribosome-inactivating protein SNAIf-like
Genome locationChr01:2486104..2486352
RNA-Seq ExpressionHG10011103
SyntenyHG10011103
Gene Ontology termsNA
InterPro domainsIPR000772 - Ricin B, lectin domain
IPR035992 - Ricin B-like lectins


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022149160.1 nigrin b-like [Momordica charantia]5.8e-0440Show/hide
Query:  CLTSTNHKEIPGPYSMIFAVPCMQGKVEQQWEMNVQDFTIHHPDSTLVLDVILVGREPYTRKMVTLVTRNGAATQQWTFM
        CLTS  +     P S+I    C   K  Q+W++N  +F I+HP++ LVLD   V R+P   ++V + TR+G  TQQWT +
Subjt:  CLTSTNHKEIPGPYSMIFAVPCMQGKVEQQWEMNVQDFTIHHPDSTLVLDVILVGREPYTRKMVTLVTRNGAATQQWTFM
XP_022149256.1 ribosome-inactivating protein SNAIf-like [Momordica charantia]9.5e-0741.98Show/hide
Query:  MCLTSTNHKEIPGPYSMIFAVPCMQGKVEQQWEMNVQDFTIHHPDSTLVLDVILVGREPYTRKMVTLVTRNGAATQQWTFM
        +CLTS++      PY  +    C + K EQ+W +      IHHP S LV+DVI +  +P   + V L ++NGA TQQWTFM
Subjt:  MCLTSTNHKEIPGPYSMIFAVPCMQGKVEQQWEMNVQDFTIHHPDSTLVLDVILVGREPYTRKMVTLVTRNGAATQQWTFM
TrEMBL top hitse value%identityAlignment
A0A6J1D4Y7 nigrin b-like2.8e-0440Show/hide
Query:  CLTSTNHKEIPGPYSMIFAVPCMQGKVEQQWEMNVQDFTIHHPDSTLVLDVILVGREPYTRKMVTLVTRNGAATQQWTFM
        CLTS  +     P S+I    C   K  Q+W++N  +F I+HP++ LVLD   V R+P   ++V + TR+G  TQQWT +
Subjt:  CLTSTNHKEIPGPYSMIFAVPCMQGKVEQQWEMNVQDFTIHHPDSTLVLDVILVGREPYTRKMVTLVTRNGAATQQWTFM
A0A6J1D7U5 ribosome-inactivating protein SNAIf-like4.6e-0741.98Show/hide
Query:  MCLTSTNHKEIPGPYSMIFAVPCMQGKVEQQWEMNVQDFTIHHPDSTLVLDVILVGREPYTRKMVTLVTRNGAATQQWTFM
        +CLTS++      PY  +    C + K EQ+W +      IHHP S LV+DVI +  +P   + V L ++NGA TQQWTFM
Subjt:  MCLTSTNHKEIPGPYSMIFAVPCMQGKVEQQWEMNVQDFTIHHPDSTLVLDVILVGREPYTRKMVTLVTRNGAATQQWTFM
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCTTAACTTCGACTAATCATAAGGAGATCCCAGGACCTTATTCTATGATATTTGCAGTTCCATGCATGCAAGGCAAAGTGGAGCAACAGTGGGAGATGAACGTACA
GGATTTCACCATTCACCATCCTGATTCAACATTGGTGTTGGATGTTATTTTAGTTGGAAGGGAGCCATATACACGAAAAATGGTTACTCTCGTTACACGTAATGGTGCTG
CTACACAACAATGGACGTTTATGGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTGCTTAACTTCGACTAATCATAAGGAGATCCCAGGACCTTATTCTATGATATTTGCAGTTCCATGCATGCAAGGCAAAGTGGAGCAACAGTGGGAGATGAACGTACA
GGATTTCACCATTCACCATCCTGATTCAACATTGGTGTTGGATGTTATTTTAGTTGGAAGGGAGCCATATACACGAAAAATGGTTACTCTCGTTACACGTAATGGTGCTG
CTACACAACAATGGACGTTTATGGAATGA
Protein sequenceShow/hide protein sequence
MCLTSTNHKEIPGPYSMIFAVPCMQGKVEQQWEMNVQDFTIHHPDSTLVLDVILVGREPYTRKMVTLVTRNGAATQQWTFME