; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10011194 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10011194
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionzf-RVT domain-containing protein
Genome locationChr01:3375215..3375523
RNA-Seq ExpressionHG10011194
SyntenyHG10011194
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.3e-1040.85Show/hide
Query:  IYRRIWRCPCPKRVKFLLWELSKSCLNTMDRLQRRSPWLYISPSWCCPCQTNHESISHLFFNYPFTAFYWA
        +Y+ +W+   PK+ KF +W L   C+NT DRLQ+R P   +SP+WC  C  + E I+HLF + P++   W+
Subjt:  IYRRIWRCPCPKRVKFLLWELSKSCLNTMDRLQRRSPWLYISPSWCCPCQTNHESISHLFFNYPFTAFYWA

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.2e-1138.64Show/hide
Query:  IYRRIWRCPCPKRVKFLLWELSKSCLNTMDRLQRRSPWLYISPSWCCPCQTNHESISHLFFNYPFTAFYWAMV--------TPNDTLS
        +Y+ +W+   PK+ KF +W L   C+NT DRLQ+R P   +SP+WC  C  + E I+HLF + P++   W+          TPND  S
Subjt:  IYRRIWRCPCPKRVKFLLWELSKSCLNTMDRLQRRSPWLYISPSWCCPCQTNHESISHLFFNYPFTAFYWAMV--------TPNDTLS

KAA0044451.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.3e-1040.85Show/hide
Query:  IYRRIWRCPCPKRVKFLLWELSKSCLNTMDRLQRRSPWLYISPSWCCPCQTNHESISHLFFNYPFTAFYWA
        +Y+ +W+   PK+ KF +W L   C+NT DRLQ+R P   +SP+WC  C  + E I+HLF + P++   W+
Subjt:  IYRRIWRCPCPKRVKFLLWELSKSCLNTMDRLQRRSPWLYISPSWCCPCQTNHESISHLFFNYPFTAFYWA

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.2e-1138.64Show/hide
Query:  IYRRIWRCPCPKRVKFLLWELSKSCLNTMDRLQRRSPWLYISPSWCCPCQTNHESISHLFFNYPFTAFYWAMV--------TPNDTLS
        +Y+ +W+   PK+ KF +W L   C+NT DRLQ+R P   +SP+WC  C  + E I+HLF + P++   W+          TPND  S
Subjt:  IYRRIWRCPCPKRVKFLLWELSKSCLNTMDRLQRRSPWLYISPSWCCPCQTNHESISHLFFNYPFTAFYWAMV--------TPNDTLS

TYK29578.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.3e-1040.85Show/hide
Query:  IYRRIWRCPCPKRVKFLLWELSKSCLNTMDRLQRRSPWLYISPSWCCPCQTNHESISHLFFNYPFTAFYWA
        +Y+ +W+   PK+ KF +W L   C+NT DRLQ+R P   +SP+WC  C  + E I+HLF + P++   W+
Subjt:  IYRRIWRCPCPKRVKFLLWELSKSCLNTMDRLQRRSPWLYISPSWCCPCQTNHESISHLFFNYPFTAFYWA

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein6.5e-1140.85Show/hide
Query:  IYRRIWRCPCPKRVKFLLWELSKSCLNTMDRLQRRSPWLYISPSWCCPCQTNHESISHLFFNYPFTAFYWA
        +Y+ +W+   PK+ KF +W L   C+NT DRLQ+R P   +SP+WC  C  + E I+HLF + P++   W+
Subjt:  IYRRIWRCPCPKRVKFLLWELSKSCLNTMDRLQRRSPWLYISPSWCCPCQTNHESISHLFFNYPFTAFYWA

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein5.9e-1238.64Show/hide
Query:  IYRRIWRCPCPKRVKFLLWELSKSCLNTMDRLQRRSPWLYISPSWCCPCQTNHESISHLFFNYPFTAFYWAMV--------TPNDTLS
        +Y+ +W+   PK+ KF +W L   C+NT DRLQ+R P   +SP+WC  C  + E I+HLF + P++   W+          TPND  S
Subjt:  IYRRIWRCPCPKRVKFLLWELSKSCLNTMDRLQRRSPWLYISPSWCCPCQTNHESISHLFFNYPFTAFYWAMV--------TPNDTLS

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein5.9e-1238.64Show/hide
Query:  IYRRIWRCPCPKRVKFLLWELSKSCLNTMDRLQRRSPWLYISPSWCCPCQTNHESISHLFFNYPFTAFYWAMV--------TPNDTLS
        +Y+ +W+   PK+ KF +W L   C+NT DRLQ+R P   +SP+WC  C  + E I+HLF + P++   W+          TPND  S
Subjt:  IYRRIWRCPCPKRVKFLLWELSKSCLNTMDRLQRRSPWLYISPSWCCPCQTNHESISHLFFNYPFTAFYWAMV--------TPNDTLS

A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein6.5e-1140.85Show/hide
Query:  IYRRIWRCPCPKRVKFLLWELSKSCLNTMDRLQRRSPWLYISPSWCCPCQTNHESISHLFFNYPFTAFYWA
        +Y+ +W+   PK+ KF +W L   C+NT DRLQ+R P   +SP+WC  C  + E I+HLF + P++   W+
Subjt:  IYRRIWRCPCPKRVKFLLWELSKSCLNTMDRLQRRSPWLYISPSWCCPCQTNHESISHLFFNYPFTAFYWA

A0A5D3E1E3 LINE-1 retrotransposable element ORF2 protein6.5e-1140.85Show/hide
Query:  IYRRIWRCPCPKRVKFLLWELSKSCLNTMDRLQRRSPWLYISPSWCCPCQTNHESISHLFFNYPFTAFYWA
        +Y+ +W+   PK+ KF +W L   C+NT DRLQ+R P   +SP+WC  C  + E I+HLF + P++   W+
Subjt:  IYRRIWRCPCPKRVKFLLWELSKSCLNTMDRLQRRSPWLYISPSWCCPCQTNHESISHLFFNYPFTAFYWA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTCTCCACCAAAATCTTTATACACTTTCATTACTCCTCATGGCCCACCAATTACTGAGGAGATCTACAGGAGGATATGGAGATGCCCTTGCCCAAAACGTGTGAA
ATTCTTATTGTGGGAACTATCTAAATCTTGCCTTAATACTATGGATCGCCTTCAGAGAAGATCCCCTTGGCTCTATATCTCTCCTTCATGGTGCTGCCCTTGCCAAACCA
ACCATGAATCTATTTCACACTTGTTTTTCAACTATCCTTTTACAGCTTTCTATTGGGCTATGGTTACACCTAATGACACTCTATCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTTCTCCACCAAAATCTTTATACACTTTCATTACTCCTCATGGCCCACCAATTACTGAGGAGATCTACAGGAGGATATGGAGATGCCCTTGCCCAAAACGTGTGAA
ATTCTTATTGTGGGAACTATCTAAATCTTGCCTTAATACTATGGATCGCCTTCAGAGAAGATCCCCTTGGCTCTATATCTCTCCTTCATGGTGCTGCCCTTGCCAAACCA
ACCATGAATCTATTTCACACTTGTTTTTCAACTATCCTTTTACAGCTTTCTATTGGGCTATGGTTACACCTAATGACACTCTATCCTGA
Protein sequenceShow/hide protein sequence
MTSPPKSLYTFITPHGPPITEEIYRRIWRCPCPKRVKFLLWELSKSCLNTMDRLQRRSPWLYISPSWCCPCQTNHESISHLFFNYPFTAFYWAMVTPNDTLS