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HG10011318 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10011318
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionF-box family protein
Genome locationChr01:4762770..4763030
RNA-Seq ExpressionHG10011318
SyntenyHG10011318
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
No hits found
TrEMBL top hitse value%identityAlignment
A0A7C8ZSU5 Uncharacterized protein3.8e-0439.71Show/hide
Query:  SCCVDEALRISRLFNSVSFVHIHRDCNKVADRLAKNAKNNDLCGFWVEMFPLHIVCL--ADKDVSSYN
        S  V +   + + F+S+ F+H  R CNKVA  LA+ A N D+   WV+  PL I+ L  +DKD   +N
Subjt:  SCCVDEALRISRLFNSVSFVHIHRDCNKVADRLAKNAKNNDLCGFWVEMFPLHIVCL--ADKDVSSYN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G60040.1 F-box family protein6.4e-0448.84Show/hide
Query:  ISCCVDEALRISRLFNSVSFVHIHRDCNKVADRLAKNAKNNDL
        I+  + + L+IS+L  S +F+HI RD N +ADRLAK A+ N L
Subjt:  ISCCVDEALRISRLFNSVSFVHIHRDCNKVADRLAKNAKNNDL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACTTATTAATTGTCATGAGAAGCATTGTGTTGTTAATGAGATTAGCTGTTGTGTTGATGAAGCTCTTCGGATCAGTAGGCTGTTTAATTCTGTGTCATTCGTTCA
TATTCATAGAGACTGTAATAAAGTAGCAGACCGTTTAGCTAAAAACGCTAAAAACAACGATCTTTGTGGCTTTTGGGTAGAAATGTTCCCACTTCATATTGTATGTCTTG
CTGACAAAGATGTATCATCTTATAATGCTTTTGAGGCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCACTTATTAATTGTCATGAGAAGCATTGTGTTGTTAATGAGATTAGCTGTTGTGTTGATGAAGCTCTTCGGATCAGTAGGCTGTTTAATTCTGTGTCATTCGTTCA
TATTCATAGAGACTGTAATAAAGTAGCAGACCGTTTAGCTAAAAACGCTAAAAACAACGATCTTTGTGGCTTTTGGGTAGAAATGTTCCCACTTCATATTGTATGTCTTG
CTGACAAAGATGTATCATCTTATAATGCTTTTGAGGCGTAA
Protein sequenceShow/hide protein sequence
MSLINCHEKHCVVNEISCCVDEALRISRLFNSVSFVHIHRDCNKVADRLAKNAKNNDLCGFWVEMFPLHIVCLADKDVSSYNAFEA