CuGenDBv2

Gene ID	HG10011326
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Transcription elongation factor SPT4 homolog
Genome location	Chr01:4861093..4862848
RNA-Seq Expression	HG10011326
Synteny	HG10011326
Gene Ontology terms	GO:0006325 - chromatin organization (biological process) GO:0006397 - mRNA processing (biological process) GO:0006414 - translational elongation (biological process) GO:0009107 - lipoate biosynthetic process (biological process) GO:0009249 - protein lipoylation (biological process) GO:0032786 - positive regulation of DNA-templated transcription, elongation (biological process) GO:0034243 - regulation of transcription elongation from RNA polymerase II promoter (biological process) GO:0005739 - mitochondrion (cellular component) GO:0032044 - DSIF complex (cellular component) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function) GO:0102552 - lipoyl synthase activity (acting on glycine-cleavage complex H protein (molecular function) GO:0102553 - lipoyl synthase activity (acting on pyruvate dehydrogenase E2 protein) (molecular function) GO:0016992 - lipoate synthase activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0003746 - translation elongation factor activity (molecular function) GO:0000993 - RNA polymerase II complex binding (molecular function)
InterPro domains	IPR038510 - Spt4 superfamily IPR029040 - RNA polymerase subunit RPABC4/transcription elongation factor Spt4 IPR022800 - Spt4/RpoE2 zinc finger IPR009287 - Transcription initiation Spt4

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0048459.1 transcription elongation factor SPT4-like protein 2 [Cucumis melo var. makuwa]

1.9e-64

88.06

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Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  D-------------WEIGACGIGGHLVPWVGNDP
                      WEIGACGIGGHLVPWVGN+P
Subjt:  D-------------WEIGACGIGGHLVPWVGNDP

XP_008461561.1 PREDICTED: transcription elongation factor SPT4 homolog 2 [Cucumis melo]

2.0e-53

98.02

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Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  D
        +
Subjt:  D

XP_022143259.1 transcription elongation factor SPT4 homolog 2 [Momordica charantia]

5.8e-53

97.03

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Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  D
        +
Subjt:  D

XP_022948256.1 transcription elongation factor SPT4 homolog 2 [Cucurbita moschata]

5.8e-53

97.03

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Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQ
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  D
        +
Subjt:  D

XP_038881174.1 transcription elongation factor SPT4 homolog 2 [Benincasa hispida]

6.8e-54

99.01

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Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  D
        +
Subjt:  D

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L9Q3 Transcription elongation factor SPT4 homolog

9.6e-54

98.02

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Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  D
        +
Subjt:  D

A0A1S3CFH1 Transcription elongation factor SPT4 homolog

9.6e-54

98.02

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Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  D
        +
Subjt:  D

A0A5A7U4T8 Transcription elongation factor SPT4-like protein 2

9.3e-65

88.06

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Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  D-------------WEIGACGIGGHLVPWVGNDP
                      WEIGACGIGGHLVPWVGN+P
Subjt:  D-------------WEIGACGIGGHLVPWVGNDP

A0A6J1CNB4 Transcription elongation factor SPT4 homolog

2.8e-53

97.03

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Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDP RSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  D
        +
Subjt:  D

A0A6J1K6X8 Transcription elongation factor SPT4 homolog

2.8e-53

97.03

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Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        MAS PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRF PGCYTLAVSEALPEDLQ
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Query:  D
        +
Subjt:  D

SwissProt top hits

e value

%identity

Alignment

P63271 Transcription elongation factor SPT4-A

3.3e-19

44.09

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Query:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDL
        +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +
Subjt:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDL

Q5RFH5 Transcription elongation factor SPT4

2.6e-19

44.09

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Query:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDL
        +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V +CT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +
Subjt:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDL

Q6DGQ0 Transcription elongation factor SPT4

6.7e-20

48.89

Show/hide

Query:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALP
        +P    H LRACL C LVKT DQF   GC+NC  + +M  + E V ECT+ +F+G+I++M P  SW A+W RIG F PG Y + V+  LP
Subjt:  IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALP

Q8LCQ3 Transcription elongation factor SPT4 homolog 1

1.4e-49

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Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M   PAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFNGIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Q94C60 Transcription elongation factor SPT4 homolog 2

7.4e-51

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Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M S PAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFNGIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

Arabidopsis top hits

e value

%identity

Alignment

AT5G08565.1 Transcription initiation Spt4-like protein

9.9e-51

Show/hide

Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M   PAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFNGIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

AT5G08565.2 Transcription initiation Spt4-like protein

3.0e-39

Show/hide

Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M   PAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+V+ TTPNFNG +S            L  G+F PGCYTLAVSEALPE++Q
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

AT5G63670.1 SPT4 homolog 2

5.2e-52

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Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ
        M S PAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFNGIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQ

AT5G63670.2 SPT4 homolog 2

1.6e-40

89.87

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Query:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRI
        M S PAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+VE TTPNFNGIISVMDP+RSWAARWLRI
Subjt:  MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRI

Sequences

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CDS sequence

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ATGGCAAGCGTACCTGCTCAAATTCCTACCAGTTTCGGGCATGAGCTCAGAGCTTGTCTTCGTTGTCGTCTTGTCAAAACTTACGATCAGTTTCGAGAATCGGGCTGTGA
GAATTGCCCCTTCTTCAAGATGGACGAAGATCATGAGCGTGTTGTAGAATGTACAACTCCTAATTTTAATGGGATAATTTCAGTCATGGATCCTGCTAGAAGTTGGGCTG
CTAGATGGCTTCGAATTGGAAGATTCGTTCCAGGTTGTTACACTCTCGCAGTCTCGGAGGCCCTCCCTGAGGATTTGCAGGATTGGGAAATTGGTGCATGTGGAATTGGA
GGACATCTGGTCCCTTGGGTTGGGAACGACCCTTAG

mRNA sequence

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Protein sequence

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MASVPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVECTTPNFNGIISVMDPARSWAARWLRIGRFVPGCYTLAVSEALPEDLQDWEIGACGIG
GHLVPWVGNDP

HG10011326 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome