CuGenDBv2

Gene ID	HG10011343
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Transportin-3 isoform X1
Genome location	Chr01:5048174..5052239
RNA-Seq Expression	HG10011343
Synteny	HG10011343
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0048527.1 transportin-3 isoform X1 [Cucumis melo var. makuwa]

2.5e-48

70.7

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Query:  MLEFASNNSEGSFNSMVIRVLSHSGEGLVSNILYALLGVSAMSR---------------------------------------VQALPLEYLKPGEVETL
        MLEFAS NSEGSFNSMVI VLSHSGEGLVSNILYALLGVSAMSR                                       VQALPLEYLKPGEVETL
Subjt:  MLEFASNNSEGSFNSMVIRVLSHSGEGLVSNILYALLGVSAMSR---------------------------------------VQALPLEYLKPGEVETL

Query:  VPLWLKAFGDAACDYLESKSCDEDNTNYGHMQGKGGRVLKRLVREFADGHRNIPNVT
        VPLWLKA GDAACDYLESKSCDE+  NYGHMQGKGGRVLKRLVREFADGHRNIPN+T
Subjt:  VPLWLKAFGDAACDYLESKSCDEDNTNYGHMQGKGGRVLKRLVREFADGHRNIPNVT

XP_008449959.1 PREDICTED: transportin-3 isoform X1 [Cucumis melo]

2.5e-48

70.7

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Query:  MLEFASNNSEGSFNSMVIRVLSHSGEGLVSNILYALLGVSAMSR---------------------------------------VQALPLEYLKPGEVETL
        MLEFAS NSEGSFNSMVI VLSHSGEGLVSNILYALLGVSAMSR                                       VQALPLEYLKPGEVETL
Subjt:  MLEFASNNSEGSFNSMVIRVLSHSGEGLVSNILYALLGVSAMSR---------------------------------------VQALPLEYLKPGEVETL

Query:  VPLWLKAFGDAACDYLESKSCDEDNTNYGHMQGKGGRVLKRLVREFADGHRNIPNVT
        VPLWLKA GDAACDYLESKSCDE+  NYGHMQGKGGRVLKRLVREFADGHRNIPN+T
Subjt:  VPLWLKAFGDAACDYLESKSCDEDNTNYGHMQGKGGRVLKRLVREFADGHRNIPNVT

XP_008449960.1 PREDICTED: transportin-3 isoform X2 [Cucumis melo]

2.5e-48

70.7

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Query:  MLEFASNNSEGSFNSMVIRVLSHSGEGLVSNILYALLGVSAMSR---------------------------------------VQALPLEYLKPGEVETL
        MLEFAS NSEGSFNSMVI VLSHSGEGLVSNILYALLGVSAMSR                                       VQALPLEYLKPGEVETL
Subjt:  MLEFASNNSEGSFNSMVIRVLSHSGEGLVSNILYALLGVSAMSR---------------------------------------VQALPLEYLKPGEVETL

Query:  VPLWLKAFGDAACDYLESKSCDEDNTNYGHMQGKGGRVLKRLVREFADGHRNIPNVT
        VPLWLKA GDAACDYLESKSCDE+  NYGHMQGKGGRVLKRLVREFADGHRNIPN+T
Subjt:  VPLWLKAFGDAACDYLESKSCDEDNTNYGHMQGKGGRVLKRLVREFADGHRNIPNVT

XP_022983999.1 transportin-3 isoform X1 [Cucurbita maxima]

4.2e-48

71.15

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Query:  MLEFASNNSEGSFNSMVIRVLSHSGEGLVSNILYALLGVSAMSR---------------------------------------VQALPLEYLKPGEVETL
        MLEFAS NSEGSFNSMVI VLSHSGEGLVSNILYALLGVSAMSR                                       VQALPLEYLKPGEVETL
Subjt:  MLEFASNNSEGSFNSMVIRVLSHSGEGLVSNILYALLGVSAMSR---------------------------------------VQALPLEYLKPGEVETL

Query:  VPLWLKAFGDAACDYLESKSCDEDNTNYGHMQGKGGRVLKRLVREFADGHRNIPNV
        VPLWLKA GDAACDYLESKSCDE  TNYGHMQGKGGRVLKRLVREFADGHRNI NV
Subjt:  VPLWLKAFGDAACDYLESKSCDEDNTNYGHMQGKGGRVLKRLVREFADGHRNIPNV

XP_038891351.1 transportin-3 [Benincasa hispida]

2.9e-49

71.97

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Query:  MLEFASNNSEGSFNSMVIRVLSHSGEGLVSNILYALLGVSAMSR---------------------------------------VQALPLEYLKPGEVETL
        MLEFAS NSEGSFNSMVIRVLSHSGEGLVSNILYALLGVSAMSR                                       VQALPLEYLKPGEVETL
Subjt:  MLEFASNNSEGSFNSMVIRVLSHSGEGLVSNILYALLGVSAMSR---------------------------------------VQALPLEYLKPGEVETL

Query:  VPLWLKAFGDAACDYLESKSCDEDNTNYGHMQGKGGRVLKRLVREFADGHRNIPNVT
        VPLWLKA GDAA DYLESKSCDE  TNYGHMQGKGGRVLKRLVREFADGHRNIPNVT
Subjt:  VPLWLKAFGDAACDYLESKSCDEDNTNYGHMQGKGGRVLKRLVREFADGHRNIPNVT

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BN70 transportin-3 isoform X1

1.2e-48

70.7

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Query:  MLEFASNNSEGSFNSMVIRVLSHSGEGLVSNILYALLGVSAMSR---------------------------------------VQALPLEYLKPGEVETL
        MLEFAS NSEGSFNSMVI VLSHSGEGLVSNILYALLGVSAMSR                                       VQALPLEYLKPGEVETL
Subjt:  MLEFASNNSEGSFNSMVIRVLSHSGEGLVSNILYALLGVSAMSR---------------------------------------VQALPLEYLKPGEVETL

Query:  VPLWLKAFGDAACDYLESKSCDEDNTNYGHMQGKGGRVLKRLVREFADGHRNIPNVT
        VPLWLKA GDAACDYLESKSCDE+  NYGHMQGKGGRVLKRLVREFADGHRNIPN+T
Subjt:  VPLWLKAFGDAACDYLESKSCDEDNTNYGHMQGKGGRVLKRLVREFADGHRNIPNVT

A0A1S3BNV6 transportin-3 isoform X2

1.2e-48

70.7

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Query:  MLEFASNNSEGSFNSMVIRVLSHSGEGLVSNILYALLGVSAMSR---------------------------------------VQALPLEYLKPGEVETL
        MLEFAS NSEGSFNSMVI VLSHSGEGLVSNILYALLGVSAMSR                                       VQALPLEYLKPGEVETL
Subjt:  MLEFASNNSEGSFNSMVIRVLSHSGEGLVSNILYALLGVSAMSR---------------------------------------VQALPLEYLKPGEVETL

Query:  VPLWLKAFGDAACDYLESKSCDEDNTNYGHMQGKGGRVLKRLVREFADGHRNIPNVT
        VPLWLKA GDAACDYLESKSCDE+  NYGHMQGKGGRVLKRLVREFADGHRNIPN+T
Subjt:  VPLWLKAFGDAACDYLESKSCDEDNTNYGHMQGKGGRVLKRLVREFADGHRNIPNVT

A0A5A7U2P7 Transportin-3 isoform X1

1.2e-48

70.7

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Query:  MLEFASNNSEGSFNSMVIRVLSHSGEGLVSNILYALLGVSAMSR---------------------------------------VQALPLEYLKPGEVETL
        MLEFAS NSEGSFNSMVI VLSHSGEGLVSNILYALLGVSAMSR                                       VQALPLEYLKPGEVETL
Subjt:  MLEFASNNSEGSFNSMVIRVLSHSGEGLVSNILYALLGVSAMSR---------------------------------------VQALPLEYLKPGEVETL

Query:  VPLWLKAFGDAACDYLESKSCDEDNTNYGHMQGKGGRVLKRLVREFADGHRNIPNVT
        VPLWLKA GDAACDYLESKSCDE+  NYGHMQGKGGRVLKRLVREFADGHRNIPN+T
Subjt:  VPLWLKAFGDAACDYLESKSCDEDNTNYGHMQGKGGRVLKRLVREFADGHRNIPNVT

A0A6J1F1T5 transportin-3 isoform X1

2.0e-48

71.15

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Query:  MLEFASNNSEGSFNSMVIRVLSHSGEGLVSNILYALLGVSAMSR---------------------------------------VQALPLEYLKPGEVETL
        MLEFAS NSEGSFNSMVI VLSHSGEGLVSNILYALLGVSAMSR                                       VQALPLEYLKPGEVETL
Subjt:  MLEFASNNSEGSFNSMVIRVLSHSGEGLVSNILYALLGVSAMSR---------------------------------------VQALPLEYLKPGEVETL

Query:  VPLWLKAFGDAACDYLESKSCDEDNTNYGHMQGKGGRVLKRLVREFADGHRNIPNV
        VPLWLKA GDAACDYLESKSCDE  TNYGHMQGKGGRVLKRLVREFADGHRNI NV
Subjt:  VPLWLKAFGDAACDYLESKSCDEDNTNYGHMQGKGGRVLKRLVREFADGHRNIPNV

A0A6J1J969 transportin-3 isoform X1

2.0e-48

71.15

Show/hide

Query:  MLEFASNNSEGSFNSMVIRVLSHSGEGLVSNILYALLGVSAMSR---------------------------------------VQALPLEYLKPGEVETL
        MLEFAS NSEGSFNSMVI VLSHSGEGLVSNILYALLGVSAMSR                                       VQALPLEYLKPGEVETL
Subjt:  MLEFASNNSEGSFNSMVIRVLSHSGEGLVSNILYALLGVSAMSR---------------------------------------VQALPLEYLKPGEVETL

Query:  VPLWLKAFGDAACDYLESKSCDEDNTNYGHMQGKGGRVLKRLVREFADGHRNIPNV
        VPLWLKA GDAACDYLESKSCDE  TNYGHMQGKGGRVLKRLVREFADGHRNI NV
Subjt:  VPLWLKAFGDAACDYLESKSCDEDNTNYGHMQGKGGRVLKRLVREFADGHRNIPNV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G12930.1 ARM repeat superfamily protein

6.1e-29

45.22

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Query:  MLEFASNNSEGSFNSMVIRVLSHSGEGLVSNILYALLGVSAMSRVQ---------------------------------------ALPLEYLKPGEVETL
        M+E  ++ S+GSF+ + ++V+SH GEGL+SN++YALLGV+AMSRV                                        ALP EYLK GE E++
Subjt:  MLEFASNNSEGSFNSMVIRVLSHSGEGLVSNILYALLGVSAMSRVQ---------------------------------------ALPLEYLKPGEVETL

Query:  VPLWLKAFGDAACDYLESKSCD--EDNTNYGHMQGKGGRVLKRLVREFADGHRNIPN
        V  W +A G A  DYLE+KSC+   +N++ GHMQGK GR LKRLVR+FAD HRN PN
Subjt:  VPLWLKAFGDAACDYLESKSCD--EDNTNYGHMQGKGGRVLKRLVREFADGHRNIPN

Sequences

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CDS sequence

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ATGTTAGAATTTGCAAGTAACAATTCTGAGGGATCATTCAATTCTATGGTTATTCGCGTCCTATCCCACAGCGGCGAGGGACTTGTATCCAACATTCTGTATGCTTTGCT
TGGTGTTTCAGCAATGTCACGGGTGCAGGCTCTCCCACTTGAGTATTTAAAACCAGGGGAAGTAGAAACTCTTGTGCCACTATGGTTAAAGGCTTTTGGAGATGCAGCCT
GTGACTACCTTGAAAGTAAAAGTTGTGATGAAGACAATACTAATTATGGACATATGCAAGGGAAGGGTGGAAGAGTCCTGAAGCGTCTAGTTCGTGAATTTGCTGATGGT
CACCGCAATATTCCAAATGTGACTTAA

mRNA sequence

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Protein sequence

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MLEFASNNSEGSFNSMVIRVLSHSGEGLVSNILYALLGVSAMSRVQALPLEYLKPGEVETLVPLWLKAFGDAACDYLESKSCDEDNTNYGHMQGKGGRVLKRLVREFADG
HRNIPNVT

HG10011343 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome