; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10011376 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10011376
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionlight-regulated protein-like
Genome locationChr01:5403825..5407267
RNA-Seq ExpressionHG10011376
SyntenyHG10011376
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
InterPro domainsIPR009856 - Light regulated Lir1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ACV88397.1 GA-like protein, partial [Cucumis sativus]1.1e-5284.78Show/hide
Query:  VLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAHKATASVVYDASVVDYSSAISVFPAEACETIGGEAC-WANIFPEVNL-QSSLNNQKPALVLE
        VLSIA+PSLLP STLS+N PSHFPLI+F SSHSS RS+ KATASVVYD SVVDYSSAISVFPAEACETIGGEAC W N+FPEV L Q+SLNNQ P    E
Subjt:  VLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAHKATASVVYDASVVDYSSAISVFPAEACETIGGEAC-WANIFPEVNL-QSSLNNQKPALVLE

Query:  EIDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF
        EIDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF
Subjt:  EIDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF

KAA0066931.1 light-regulated protein isoform X2 [Cucumis melo var. makuwa]4.9e-4882.27Show/hide
Query:  AVLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAHKATASVVYDASVVDYSSAISVFPAEACETIGGEA-CWANIFPEVNLQSSL-NNQKPALV-
        AVLSIA+PSLLP STLSN++ SHFP I+F  S+SS RSA KATASVVYD SVVDYSSAISVFPAEACETIGGEA CWAN+FPEV LQ SL NNQ PA+  
Subjt:  AVLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAHKATASVVYDASVVDYSSAISVFPAEACETIGGEA-CWANIFPEVNLQSSL-NNQKPALV-

Query:  LEEIDREYLDY-ADSKTVFPGEACDDLGGEFCEPEFLNGVF
        LEEIDREYLDY ADSKTVF GEACDDLGGEFCE EFLNGVF
Subjt:  LEEIDREYLDY-ADSKTVFPGEACDDLGGEFCEPEFLNGVF

KAE8650797.1 hypothetical protein Csa_017474 [Cucumis sativus]1.0e-5385Show/hide
Query:  QAVLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAHKATASVVYDASVVDYSSAISVFPAEACETIGGEAC-WANIFPEVNL-QSSLNNQKPALV
        QAVLSIA+PSLLP STLS+N PSHFPLI+F SSHSS RS+ KATASVVYD SVVDYSSAISVFPAEACETIGGEAC W N+FPEV L Q+SLNNQ P   
Subjt:  QAVLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAHKATASVVYDASVVDYSSAISVFPAEACETIGGEAC-WANIFPEVNL-QSSLNNQKPALV

Query:  LEEIDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF
         EEIDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF
Subjt:  LEEIDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF

XP_004145699.2 light-regulated protein, chloroplastic [Cucumis sativus]2.7e-5485.11Show/hide
Query:  MQAVLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAHKATASVVYDASVVDYSSAISVFPAEACETIGGEAC-WANIFPEVNL-QSSLNNQKPAL
        MQAVLSIA+PSLLP STLS+N PSHFPLI+F SSHSS RS+ KATASVVYD SVVDYSSAISVFPAEACETIGGEAC W N+FPEV L Q+SLNNQ P  
Subjt:  MQAVLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAHKATASVVYDASVVDYSSAISVFPAEACETIGGEAC-WANIFPEVNL-QSSLNNQKPAL

Query:  VLEEIDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF
          EEIDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF
Subjt:  VLEEIDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF

XP_038893926.1 light-regulated protein, chloroplastic-like [Benincasa hispida]5.6e-6088.41Show/hide
Query:  MQAVLSIALPSLLPSTLSNNNPSHFPLISFRSSHSSGRSAHKATASVVYDASVVDYSSAISVFPAEACETIGGEACWANIFPEVNLQSSLNNQKPALVLE
        MQAVLSIA+P LLPSTLSNNNPS FPLISF SSH S RSA KATASVVYDAS+VDYSSAISVFPAEACETIGGEACWAN+FPEV +Q SLNNQKPA+ LE
Subjt:  MQAVLSIALPSLLPSTLSNNNPSHFPLISFRSSHSSGRSAHKATASVVYDASVVDYSSAISVFPAEACETIGGEACWANIFPEVNLQSSLNNQKPALVLE

Query:  EIDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF
        EIDREYLDYADS+TVFPGEACDDLGGEFCEPEFLN VF
Subjt:  EIDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF

TrEMBL top hitse value%identityAlignment
A0A0A0L8G9 Uncharacterized protein1.3e-5485.11Show/hide
Query:  MQAVLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAHKATASVVYDASVVDYSSAISVFPAEACETIGGEAC-WANIFPEVNL-QSSLNNQKPAL
        MQAVLSIA+PSLLP STLS+N PSHFPLI+F SSHSS RS+ KATASVVYD SVVDYSSAISVFPAEACETIGGEAC W N+FPEV L Q+SLNNQ P  
Subjt:  MQAVLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAHKATASVVYDASVVDYSSAISVFPAEACETIGGEAC-WANIFPEVNL-QSSLNNQKPAL

Query:  VLEEIDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF
          EEIDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF
Subjt:  VLEEIDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF

A0A1S3BND3 light-regulated protein isoform X21.5e-4781.56Show/hide
Query:  AVLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAHKATASVVYDASVVDYSSAISVFPAEACETIGGEA-CWANIFPEVNLQSSL-NNQKPALV-
        AVLSIA+PSLLP STLSN++ SHFP I+F  S+SS  SA KATASVVYD SVVDYSSAISVFPAEACETIGGEA CWAN+FPEV LQ SL NNQ PA+  
Subjt:  AVLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAHKATASVVYDASVVDYSSAISVFPAEACETIGGEA-CWANIFPEVNLQSSL-NNQKPALV-

Query:  LEEIDREYLDY-ADSKTVFPGEACDDLGGEFCEPEFLNGVF
        LEEIDREYLDY ADSKTVF GEACDDLGGEFCE EFLNGVF
Subjt:  LEEIDREYLDY-ADSKTVFPGEACDDLGGEFCEPEFLNGVF

A0A1S4DXW1 light-regulated protein isoform X31.5e-4781.56Show/hide
Query:  AVLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAHKATASVVYDASVVDYSSAISVFPAEACETIGGEA-CWANIFPEVNLQSSL-NNQKPALV-
        AVLSIA+PSLLP STLSN++ SHFP I+F  S+SS  SA KATASVVYD SVVDYSSAISVFPAEACETIGGEA CWAN+FPEV LQ SL NNQ PA+  
Subjt:  AVLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAHKATASVVYDASVVDYSSAISVFPAEACETIGGEA-CWANIFPEVNLQSSL-NNQKPALV-

Query:  LEEIDREYLDY-ADSKTVFPGEACDDLGGEFCEPEFLNGVF
        LEEIDREYLDY ADSKTVF GEACDDLGGEFCE EFLNGVF
Subjt:  LEEIDREYLDY-ADSKTVFPGEACDDLGGEFCEPEFLNGVF

A0A5A7VMP8 Light-regulated protein isoform X22.4e-4882.27Show/hide
Query:  AVLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAHKATASVVYDASVVDYSSAISVFPAEACETIGGEA-CWANIFPEVNLQSSL-NNQKPALV-
        AVLSIA+PSLLP STLSN++ SHFP I+F  S+SS RSA KATASVVYD SVVDYSSAISVFPAEACETIGGEA CWAN+FPEV LQ SL NNQ PA+  
Subjt:  AVLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAHKATASVVYDASVVDYSSAISVFPAEACETIGGEA-CWANIFPEVNLQSSL-NNQKPALV-

Query:  LEEIDREYLDY-ADSKTVFPGEACDDLGGEFCEPEFLNGVF
        LEEIDREYLDY ADSKTVF GEACDDLGGEFCE EFLNGVF
Subjt:  LEEIDREYLDY-ADSKTVFPGEACDDLGGEFCEPEFLNGVF

C9E9F1 GA-like protein (Fragment)5.5e-5384.78Show/hide
Query:  VLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAHKATASVVYDASVVDYSSAISVFPAEACETIGGEAC-WANIFPEVNL-QSSLNNQKPALVLE
        VLSIA+PSLLP STLS+N PSHFPLI+F SSHSS RS+ KATASVVYD SVVDYSSAISVFPAEACETIGGEAC W N+FPEV L Q+SLNNQ P    E
Subjt:  VLSIALPSLLP-STLSNNNPSHFPLISFRSSHSSGRSAHKATASVVYDASVVDYSSAISVFPAEACETIGGEAC-WANIFPEVNL-QSSLNNQKPALVLE

Query:  EIDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF
        EIDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF
Subjt:  EIDREYLDYADSKTVFPGEACDDLGGEFCEPEFLNGVF

SwissProt top hitse value%identityAlignment
Q03200 Light-regulated protein, chloroplastic2.6e-2042.74Show/hide
Query:  IALPSLLPSTLSNNNPSHFPLISFRSSHSSGRSAHKATASVVYDASVVDYSSAISVFPAEACETIGGEACWANIFPEVNLQSSLNNQKPALVLEEIDREY
        + L ++LP+ +   +      +  ++          A A+V  +A+ VDYSS ISVFP EAC+ IGGEAC   ++PE  L SS          EE+DR+Y
Subjt:  IALPSLLPSTLSNNNPSHFPLISFRSSHSSGRSAHKATASVVYDASVVDYSSAISVFPAEACETIGGEACWANIFPEVNLQSSLNNQKPALVLEEIDREY

Query:  LDYADSKTVFPGEACDDLGGEFCE
        L Y +  TVFP EACDDLGGEFC+
Subjt:  LDYADSKTVFPGEACDDLGGEFCE

Q96500 Light-regulated protein 1, chloroplastic7.7e-2047.14Show/hide
Query:  MQAVLSIALPSLLPSTLSNNNPS------HFPLISFRSSHSSGRSAHKATASVVYDASVVDYSSAI-SVFPAEACETIGGEACWANIFPEVNLQSSLNNQ
        MQ  L I    LLP   S ++P       H    S  SS  S  S+  +++S+  D + VDY+S+I SVFPAEACE I G AC A+I+PEV L +   ++
Subjt:  MQAVLSIALPSLLPSTLSNNNPS------HFPLISFRSSHSSGRSAHKATASVVYDASVVDYSSAI-SVFPAEACETIGGEACWANIFPEVNLQSSLNNQ

Query:  KPALVLEEIDREYLDYADSKTVFPGEACDDLGGEFCEPEF
          A   E +DREY +Y   KTVF  EACDDLGGEFCEP+F
Subjt:  KPALVLEEIDREYLDYADSKTVFPGEACDDLGGEFCEPEF

Arabidopsis top hitse value%identityAlignment
AT3G26740.1 CCR-like5.4e-2147.14Show/hide
Query:  MQAVLSIALPSLLPSTLSNNNPS------HFPLISFRSSHSSGRSAHKATASVVYDASVVDYSSAI-SVFPAEACETIGGEACWANIFPEVNLQSSLNNQ
        MQ  L I    LLP   S ++P       H    S  SS  S  S+  +++S+  D + VDY+S+I SVFPAEACE I G AC A+I+PEV L +   ++
Subjt:  MQAVLSIALPSLLPSTLSNNNPS------HFPLISFRSSHSSGRSAHKATASVVYDASVVDYSSAI-SVFPAEACETIGGEACWANIFPEVNLQSSLNNQ

Query:  KPALVLEEIDREYLDYADSKTVFPGEACDDLGGEFCEPEF
          A   E +DREY +Y   KTVF  EACDDLGGEFCEP+F
Subjt:  KPALVLEEIDREYLDYADSKTVFPGEACDDLGGEFCEPEF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGCTGTTCTTAGCATTGCTCTTCCTTCCCTTCTCCCCTCAACACTTTCCAATAATAACCCTTCTCACTTTCCTTTGATCTCATTTCGTTCGTCTCACTCCTCGGG
TCGCTCGGCCCACAAAGCAACCGCCTCCGTCGTCTACGACGCATCGGTGGTTGATTATAGTTCTGCTATCTCGGTGTTTCCTGCAGAAGCATGTGAGACAATTGGTGGAG
AAGCATGTTGGGCAAATATATTCCCGGAAGTGAATCTTCAGTCTTCACTTAATAATCAAAAACCCGCCCTTGTTTTGGAGGAGATTGATAGAGAATATCTTGATTATGCC
GATTCAAAGACTGTTTTCCCAGGAGAGGCTTGCGATGATCTTGGTGGAGAATTCTGTGAACCCGAGTTTCTAAACGGCGTTTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAGGCTGTTCTTAGCATTGCTCTTCCTTCCCTTCTCCCCTCAACACTTTCCAATAATAACCCTTCTCACTTTCCTTTGATCTCATTTCGTTCGTCTCACTCCTCGGG
TCGCTCGGCCCACAAAGCAACCGCCTCCGTCGTCTACGACGCATCGGTGGTTGATTATAGTTCTGCTATCTCGGTGTTTCCTGCAGAAGCATGTGAGACAATTGGTGGAG
AAGCATGTTGGGCAAATATATTCCCGGAAGTGAATCTTCAGTCTTCACTTAATAATCAAAAACCCGCCCTTGTTTTGGAGGAGATTGATAGAGAATATCTTGATTATGCC
GATTCAAAGACTGTTTTCCCAGGAGAGGCTTGCGATGATCTTGGTGGAGAATTCTGTGAACCCGAGTTTCTAAACGGCGTTTTCTAG
Protein sequenceShow/hide protein sequence
MQAVLSIALPSLLPSTLSNNNPSHFPLISFRSSHSSGRSAHKATASVVYDASVVDYSSAISVFPAEACETIGGEACWANIFPEVNLQSSLNNQKPALVLEEIDREYLDYA
DSKTVFPGEACDDLGGEFCEPEFLNGVF