CuGenDBv2

Gene ID	HG10011387
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Translocon-associated protein subunit beta
Genome location	Chr01:5540389..5542562
RNA-Seq Expression	HG10011387
Synteny	HG10011387
Gene Ontology terms	GO:0005789 - endoplasmic reticulum membrane (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7017859.1 Translocon-associated protein subunit beta [Cucurbita argyrosperma subsp. argyrosperma]

2.0e-87

90.62

Show/hide

Query:  MAIPIQASLIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNQGSSTAYDVSLNAASWPGDMFDIVSGETSKSWERLDAGGHISH
        MA  IQA LIHLLLA LFVSSTIA+SDVPFIVAHKKA+LTRLKSGVERVSVSI+IYNQGSSTAYDV+LN ASWPGD+FDIVSGETSKSWERLDAGGH+SH
Subjt:  MAIPIQASLIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNQGSSTAYDVSLNAASWPGDMFDIVSGETSKSWERLDAGGHISH

Query:  SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKFVWRLLAKYGSLISVISIVVLFIYLVASPSKSAAKGGSKKK
        SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKF WRLLAKYGSLISV+S VVLF+YLVASPSKSAAKG  KK+
Subjt:  SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKFVWRLLAKYGSLISVISIVVLFIYLVASPSKSAAKGGSKKK

XP_022935419.1 translocon-associated protein subunit beta isoform X1 [Cucurbita moschata]

6.3e-86

89.69

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Query:  MAIPIQASLIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNQGSSTAYDVSLNAASWPGDMFDIVSGETSKSWERLDAGGHISH
        MA  IQA LIHLLLA LFVSSTIA+SDVPFIVAHKKA+LTRLKSGVERVSVSI+IYNQGSSTAYDV+LN ASWPGD+FDIVSGETSKSWERLDAGGH+SH
Subjt:  MAIPIQASLIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNQGSSTAYDVSLNAASWPGDMFDIVSGETSKSWERLDAGGHISH

Query:  SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKFVW--RLLAKYGSLISVISIVVLFIYLVASPSKSAAKGGSKKK
        SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKF W  RLLAKYGSLISV+S VVLF+YLVASPSKSAAKG  KK+
Subjt:  SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKFVW--RLLAKYGSLISVISIVVLFIYLVASPSKSAAKGGSKKK

XP_022983434.1 translocon-associated protein subunit beta isoform X1 [Cucurbita maxima]

2.2e-86

90.21

Show/hide

Query:  MAIPIQASLIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNQGSSTAYDVSLNAASWPGDMFDIVSGETSKSWERLDAGGHISH
        MA  IQA LIHLLLALLFVSSTIA+SDVPFIVAHKKA+LTRLKSGVERVSVSI+IYNQGSSTAYDV+LN ASWPGD+FDIVSGETSKSWERLDAGGH+SH
Subjt:  MAIPIQASLIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNQGSSTAYDVSLNAASWPGDMFDIVSGETSKSWERLDAGGHISH

Query:  SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKFVW--RLLAKYGSLISVISIVVLFIYLVASPSKSAAKGGSKKK
        SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKF W  RLLAKYGSLISV+S VVLF+YLVASPSKSAAKG  KK+
Subjt:  SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKFVW--RLLAKYGSLISVISIVVLFIYLVASPSKSAAKGGSKKK

XP_022983435.1 translocon-associated protein subunit beta isoform X2 [Cucurbita maxima]

2.2e-86

90.21

Show/hide

Query:  MAIPIQASLIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNQGSSTAYDVSLNAASWPGDMFDIVSGETSKSWERLDAGGHISH
        MA  IQA LIHLLLALLFVSSTIA+SDVPFIVAHKKA+LTRLKSGVERVSVSI+IYNQGSSTAYDV+LN ASWPGD+FDIVSGETSKSWERLDAGGH+SH
Subjt:  MAIPIQASLIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNQGSSTAYDVSLNAASWPGDMFDIVSGETSKSWERLDAGGHISH

Query:  SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKFVW--RLLAKYGSLISVISIVVLFIYLVASPSKSAAKGGSKKK
        SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKF W  RLLAKYGSLISV+S VVLF+YLVASPSKSAAKG  KK+
Subjt:  SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKFVW--RLLAKYGSLISVISIVVLFIYLVASPSKSAAKGGSKKK

XP_038894726.1 translocon-associated protein subunit beta [Benincasa hispida]

1.7e-86

90.72

Show/hide

Query:  MAIPIQASLIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNQGSSTAYDVSLNAASWPGDMFDIVSGETSKSWERLDAGGHISH
        MA PIQ  LIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYN+GSSTAYD SLN ASWP DMFDIVSGETSKSWERLDAGGHISH
Subjt:  MAIPIQASLIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNQGSSTAYDVSLNAASWPGDMFDIVSGETSKSWERLDAGGHISH

Query:  SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKFVW--RLLAKYGSLISVISIVVLFIYLVASPSKSAAKGGSKKK
        SFELEAKTKG+FHGSPA+ITFRVPTKSALQEALSTPILPLD+LAD+PPEKK  W  RLLAKYGSLISVISIVVLFIYLVASPSKSAAKG  KK+
Subjt:  SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKFVW--RLLAKYGSLISVISIVVLFIYLVASPSKSAAKGGSKKK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LBA3 Translocon-associated protein subunit beta

1.3e-84

90.32

Show/hide

Query:  LIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNQGSSTAYDVSLNAASWPGDMFDIVSGETSKSWERLDAGGHISHSFELEAKT
        +IHLL A LF+SSTIATSDVPFIVAHKKASLTRLKSG ERVSVSIDIYNQGSSTAYDVSLN ASWPGDMFDIVSGETS SWERLDAGGH+SHSFELEAK+
Subjt:  LIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNQGSSTAYDVSLNAASWPGDMFDIVSGETSKSWERLDAGGHISHSFELEAKT

Query:  KGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKFVW--RLLAKYGSLISVISIVVLFIYLVASPSKSAAKGGSKKK
        +GMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKF W  RLLAKYGSLISV+SI+VLFIYLVASPSKSAAKG  KK+
Subjt:  KGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKFVW--RLLAKYGSLISVISIVVLFIYLVASPSKSAAKGGSKKK

A0A6J1DQQ5 Translocon-associated protein subunit beta

4.4e-85

89.18

Show/hide

Query:  MAIPIQASLIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNQGSSTAYDVSLNAASWPGDMFDIVSGETSKSWERLDAGGHISH
        MA PIQ+ LI LL ALLFV+STIATSDVPFIVAHKKASLTRLKSG ERVSVSIDIYNQGSSTAYDVSLN ASWP D+FDI+SGETSKSWERLDAG H+SH
Subjt:  MAIPIQASLIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNQGSSTAYDVSLNAASWPGDMFDIVSGETSKSWERLDAGGHISH

Query:  SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKFVW--RLLAKYGSLISVISIVVLFIYLVASPSKSAAKGGSKKK
        SFELEAKTKGMFHGSPAVITFRVPTKSALQEA STPILPLDVLADRPPEKKF W  RLLAKYGSLISV+SIVVLFIYLVASPSKSAAKG  KK+
Subjt:  SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKFVW--RLLAKYGSLISVISIVVLFIYLVASPSKSAAKGGSKKK

A0A6J1FAK9 Translocon-associated protein subunit beta

3.1e-86

89.69

Show/hide

Query:  MAIPIQASLIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNQGSSTAYDVSLNAASWPGDMFDIVSGETSKSWERLDAGGHISH
        MA  IQA LIHLLLA LFVSSTIA+SDVPFIVAHKKA+LTRLKSGVERVSVSI+IYNQGSSTAYDV+LN ASWPGD+FDIVSGETSKSWERLDAGGH+SH
Subjt:  MAIPIQASLIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNQGSSTAYDVSLNAASWPGDMFDIVSGETSKSWERLDAGGHISH

Query:  SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKFVW--RLLAKYGSLISVISIVVLFIYLVASPSKSAAKGGSKKK
        SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKF W  RLLAKYGSLISV+S VVLF+YLVASPSKSAAKG  KK+
Subjt:  SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKFVW--RLLAKYGSLISVISIVVLFIYLVASPSKSAAKGGSKKK

A0A6J1J5V1 Translocon-associated protein subunit beta

1.1e-86

90.21

Show/hide

Query:  MAIPIQASLIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNQGSSTAYDVSLNAASWPGDMFDIVSGETSKSWERLDAGGHISH
        MA  IQA LIHLLLALLFVSSTIA+SDVPFIVAHKKA+LTRLKSGVERVSVSI+IYNQGSSTAYDV+LN ASWPGD+FDIVSGETSKSWERLDAGGH+SH
Subjt:  MAIPIQASLIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNQGSSTAYDVSLNAASWPGDMFDIVSGETSKSWERLDAGGHISH

Query:  SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKFVW--RLLAKYGSLISVISIVVLFIYLVASPSKSAAKGGSKKK
        SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKF W  RLLAKYGSLISV+S VVLF+YLVASPSKSAAKG  KK+
Subjt:  SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKFVW--RLLAKYGSLISVISIVVLFIYLVASPSKSAAKGGSKKK

A0A6J1J7C6 Translocon-associated protein subunit beta

1.1e-86

90.21

Show/hide

Query:  MAIPIQASLIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNQGSSTAYDVSLNAASWPGDMFDIVSGETSKSWERLDAGGHISH
        MA  IQA LIHLLLALLFVSSTIA+SDVPFIVAHKKA+LTRLKSGVERVSVSI+IYNQGSSTAYDV+LN ASWPGD+FDIVSGETSKSWERLDAGGH+SH
Subjt:  MAIPIQASLIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNQGSSTAYDVSLNAASWPGDMFDIVSGETSKSWERLDAGGHISH

Query:  SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKFVW--RLLAKYGSLISVISIVVLFIYLVASPSKSAAKGGSKKK
        SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKF W  RLLAKYGSLISV+S VVLF+YLVASPSKSAAKG  KK+
Subjt:  SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKFVW--RLLAKYGSLISVISIVVLFIYLVASPSKSAAKGGSKKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G14030.1 translocon-associated protein beta (TRAPB) family protein

3.3e-64

64.62

Show/hide

Query:  MAIPIQASLIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNQGSSTAYDVSLNAASWPGDMFDIVSGETSKSWERLDAGGHISH
        MA+ +   LI  +   + VS++ ATS+VPF+V HKKA+L RLKSG ERVSVS DIYNQGSS+AYDV+L   SW    F++V+G TSKSWERLDAGG +SH
Subjt:  MAIPIQASLIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNQGSSTAYDVSLNAASWPGDMFDIVSGETSKSWERLDAGGHISH

Query:  SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKF--VWRLLAKYGSLISVISIVVLFIYLVASPSKSAAKGGSKKKR
        S ELEAK KG+F+G+PAV+TFR+PTK ALQEA STP+LPLD+LAD+PP K      RLLAKYGSL+SVIS+VV FIYLVA+P  + +K  SKKKR
Subjt:  SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKF--VWRLLAKYGSLISVISIVVLFIYLVASPSKSAAKGGSKKKR

AT5G14030.2 translocon-associated protein beta (TRAPB) family protein

3.3e-64

64.62

Show/hide

Query:  MAIPIQASLIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNQGSSTAYDVSLNAASWPGDMFDIVSGETSKSWERLDAGGHISH
        MA+ +   LI  +   + VS++ ATS+VPF+V HKKA+L RLKSG ERVSVS DIYNQGSS+AYDV+L   SW    F++V+G TSKSWERLDAGG +SH
Subjt:  MAIPIQASLIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNQGSSTAYDVSLNAASWPGDMFDIVSGETSKSWERLDAGGHISH

Query:  SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKF--VWRLLAKYGSLISVISIVVLFIYLVASPSKSAAKGGSKKKR
        S ELEAK KG+F+G+PAV+TFR+PTK ALQEA STP+LPLD+LAD+PP K      RLLAKYGSL+SVIS+VV FIYLVA+P  + +K  SKKKR
Subjt:  SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKF--VWRLLAKYGSLISVISIVVLFIYLVASPSKSAAKGGSKKKR

AT5G14030.3 translocon-associated protein beta (TRAPB) family protein

3.3e-64

64.62

Show/hide

Query:  MAIPIQASLIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNQGSSTAYDVSLNAASWPGDMFDIVSGETSKSWERLDAGGHISH
        MA+ +   LI  +   + VS++ ATS+VPF+V HKKA+L RLKSG ERVSVS DIYNQGSS+AYDV+L   SW    F++V+G TSKSWERLDAGG +SH
Subjt:  MAIPIQASLIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNQGSSTAYDVSLNAASWPGDMFDIVSGETSKSWERLDAGGHISH

Query:  SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKF--VWRLLAKYGSLISVISIVVLFIYLVASPSKSAAKGGSKKKR
        S ELEAK KG+F+G+PAV+TFR+PTK ALQEA STP+LPLD+LAD+PP K      RLLAKYGSL+SVIS+VV FIYLVA+P  + +K  SKKKR
Subjt:  SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKF--VWRLLAKYGSLISVISIVVLFIYLVASPSKSAAKGGSKKKR

AT5G14030.4 translocon-associated protein beta (TRAPB) family protein

3.3e-64

64.62

Show/hide

Query:  MAIPIQASLIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNQGSSTAYDVSLNAASWPGDMFDIVSGETSKSWERLDAGGHISH
        MA+ +   LI  +   + VS++ ATS+VPF+V HKKA+L RLKSG ERVSVS DIYNQGSS+AYDV+L   SW    F++V+G TSKSWERLDAGG +SH
Subjt:  MAIPIQASLIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNQGSSTAYDVSLNAASWPGDMFDIVSGETSKSWERLDAGGHISH

Query:  SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKF--VWRLLAKYGSLISVISIVVLFIYLVASPSKSAAKGGSKKKR
        S ELEAK KG+F+G+PAV+TFR+PTK ALQEA STP+LPLD+LAD+PP K      RLLAKYGSL+SVIS+VV FIYLVA+P  + +K  SKKKR
Subjt:  SFELEAKTKGMFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKF--VWRLLAKYGSLISVISIVVLFIYLVASPSKSAAKGGSKKKR

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCGATTCCGATTCAGGCCTCTCTGATCCATCTCCTCTTGGCTTTGCTCTTCGTTTCGTCAACGATCGCAACCTCCGATGTTCCATTCATTGTCGCGCACAAGAAGGC
GTCCCTCACTCGCCTCAAATCCGGCGTCGAACGCGTCTCGGTCTCAATCGACATTTACAATCAGGGATCTTCGACCGCATATGATGTAAGTCTGAACGCCGCAAGCTGGC
CAGGAGATATGTTTGATATTGTGAGTGGTGAGACTTCCAAATCGTGGGAAAGACTTGATGCTGGTGGTCATATATCTCATTCATTTGAATTAGAAGCGAAAACAAAAGGA
ATGTTTCATGGTTCACCGGCTGTTATCACATTCCGCGTCCCTACAAAGTCTGCTTTACAGGAGGCCTTATCAACCCCAATTCTACCTTTGGATGTCCTCGCTGACAGGCC
ACCAGAGAAGAAGTTTGTGTGGAGGCTGCTTGCAAAGTACGGCTCCCTGATCTCGGTGATCTCCATCGTCGTTCTCTTCATCTATCTTGTGGCTAGCCCATCGAAATCGG
CTGCAAAAGGAGGAAGCAAGAAGAAGCGTTAA

mRNA sequence

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Protein sequence

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MAIPIQASLIHLLLALLFVSSTIATSDVPFIVAHKKASLTRLKSGVERVSVSIDIYNQGSSTAYDVSLNAASWPGDMFDIVSGETSKSWERLDAGGHISHSFELEAKTKG
MFHGSPAVITFRVPTKSALQEALSTPILPLDVLADRPPEKKFVWRLLAKYGSLISVISIVVLFIYLVASPSKSAAKGGSKKKR

HG10011387 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome