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HG10011402 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10011402
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionSuccinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial
Genome locationChr01:5708816..5710170
RNA-Seq ExpressionHG10011402
SyntenyHG10011402
Gene Ontology termsGO:0006099 - tricarboxylic acid cycle (biological process)
GO:0022904 - respiratory electron transport chain (biological process)
GO:0005743 - mitochondrial inner membrane (cellular component)
GO:0045273 - respiratory chain complex II (cellular component)
GO:0008177 - succinate dehydrogenase (ubiquinone) activity (molecular function)
GO:0009055 - electron transfer activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051537 - 2 iron, 2 sulfur cluster binding (molecular function)
GO:0051538 - 3 iron, 4 sulfur cluster binding (molecular function)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domainsIPR009051 - Alpha-helical ferredoxin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066953.1 succinate dehydrogenase (ubiquinone) iron-sulfur subunit 2 [Cucumis melo var. makuwa]1.9e-4264.24Show/hide
Query:  MEMRGRIGIRVSERIEETGELLRYAKACVHLPLVGLEIGHSICLGVS-RLRNFLIR-HNKYLYTSGGTSKPVVSYFTLLLPSEGYGQVVFLVLRRWISDS
        MEMR R  +RVSERIEETGE LRYAKAC++L  V LE GHSIC+GVS R RN L+  +NK++ T    ++P+  + T         + +   +  WISDS
Subjt:  MEMRGRIGIRVSERIEETGELLRYAKACVHLPLVGLEIGHSICLGVS-RLRNFLIR-HNKYLYTSGGTSKPVVSYFTLLLPSEGYGQVVFLVLRRWISDS

Query:  RDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQLVG
        RDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQ+IK LQL+G
Subjt:  RDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQLVG

XP_022154158.1 succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [Momordica charantia]1.5e-2684.51Show/hide
Query:  PSEGYGQVVFLVLRRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQLVG
        P    G    L   RWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQLVG
Subjt:  PSEGYGQVVFLVLRRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQLVG

XP_022935005.1 succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [Cucurbita moschata]1.3e-2583.1Show/hide
Query:  PSEGYGQVVFLVLRRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQLVG
        P    G    L   RWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIK LQLVG
Subjt:  PSEGYGQVVFLVLRRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQLVG

XP_023527486.1 succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Cucurbita pepo subsp. pepo]1.3e-2583.1Show/hide
Query:  PSEGYGQVVFLVLRRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQLVG
        P    G    L   RWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIK LQLVG
Subjt:  PSEGYGQVVFLVLRRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQLVG

XP_038898422.1 succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Benincasa hispida]7.4e-2684.29Show/hide
Query:  PSEGYGQVVFLVLRRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQLV
        P    G    L   RWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQLV
Subjt:  PSEGYGQVVFLVLRRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQLV

TrEMBL top hitse value%identityAlignment
A0A5D3E2A9 Succinate dehydrogenase (Ubiquinone) iron-sulfur subunit 29.4e-4364.24Show/hide
Query:  MEMRGRIGIRVSERIEETGELLRYAKACVHLPLVGLEIGHSICLGVS-RLRNFLIR-HNKYLYTSGGTSKPVVSYFTLLLPSEGYGQVVFLVLRRWISDS
        MEMR R  +RVSERIEETGE LRYAKAC++L  V LE GHSIC+GVS R RN L+  +NK++ T    ++P+  + T         + +   +  WISDS
Subjt:  MEMRGRIGIRVSERIEETGELLRYAKACVHLPLVGLEIGHSICLGVS-RLRNFLIR-HNKYLYTSGGTSKPVVSYFTLLLPSEGYGQVVFLVLRRWISDS

Query:  RDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQLVG
        RDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQ+IK LQL+G
Subjt:  RDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQLVG

A0A6J1DJI7 Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial7.3e-2784.51Show/hide
Query:  PSEGYGQVVFLVLRRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQLVG
        P    G    L   RWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQLVG
Subjt:  PSEGYGQVVFLVLRRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQLVG

A0A6J1EJ68 Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial1.8e-2581.69Show/hide
Query:  PSEGYGQVVFLVLRRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQLVG
        P    G    L   RWISDSRDE+TKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIK LQLVG
Subjt:  PSEGYGQVVFLVLRRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQLVG

A0A6J1F9C7 Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial6.1e-2683.1Show/hide
Query:  PSEGYGQVVFLVLRRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQLVG
        P    G    L   RWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIK LQLVG
Subjt:  PSEGYGQVVFLVLRRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQLVG

A0A6J1J748 Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial6.1e-2683.1Show/hide
Query:  PSEGYGQVVFLVLRRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQLVG
        P    G    L   RWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIK LQLVG
Subjt:  PSEGYGQVVFLVLRRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQLVG

SwissProt top hitse value%identityAlignment
Q1RGP3 Succinate dehydrogenase iron-sulfur subunit7.7e-1862.9Show/hide
Query:  GQVVFLVLRRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHL
        G  + L   RWI+DSRD++T ERLEA+ D FKLYRCHTI+NC + CPKGLNP K I  IK L
Subjt:  GQVVFLVLRRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHL

Q8LB02 Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial2.9e-2576.06Show/hide
Query:  PSEGYGQVVFLVLRRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQLVG
        P    G    L   RWISDSRDEYTKERLEAI+DEFKLYRCHTILNCARACPKGLNPGKQI +IK LQ  G
Subjt:  PSEGYGQVVFLVLRRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQLVG

Q8LBZ7 Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial6.5e-2577.94Show/hide
Query:  PSEGYGQVVFLVLRRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQ
        P    G    L   RWISDSRDEYTKERLEAI+DEFKLYRCHTILNCARACPKGLNPGKQI +IK LQ
Subjt:  PSEGYGQVVFLVLRRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQ

Q92JJ8 Succinate dehydrogenase iron-sulfur subunit2.9e-1762.9Show/hide
Query:  GQVVFLVLRRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHL
        G  + L   RWI+DSRD+ T ERLEA+ D FKLYRCHTI+NC + CPKGLNP K I  IK L
Subjt:  GQVVFLVLRRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHL

Q9S827 Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial1.5e-2166.67Show/hide
Query:  PSEGYGQVVFLVLRRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQL
        P E  G    L   RWI DSRD++TKERL++INDEFKLYRCHTI NC  ACPKGLNP K I  IK LQL
Subjt:  PSEGYGQVVFLVLRRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQL

Arabidopsis top hitse value%identityAlignment
AT3G27380.1 succinate dehydrogenase 2-14.6e-2677.94Show/hide
Query:  PSEGYGQVVFLVLRRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQ
        P    G    L   RWISDSRDEYTKERLEAI+DEFKLYRCHTILNCARACPKGLNPGKQI +IK LQ
Subjt:  PSEGYGQVVFLVLRRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQ

AT3G27380.2 succinate dehydrogenase 2-14.6e-2677.94Show/hide
Query:  PSEGYGQVVFLVLRRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQ
        P    G    L   RWISDSRDEYTKERLEAI+DEFKLYRCHTILNCARACPKGLNPGKQI +IK LQ
Subjt:  PSEGYGQVVFLVLRRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQ

AT5G40650.1 succinate dehydrogenase 2-22.1e-2676.06Show/hide
Query:  PSEGYGQVVFLVLRRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQLVG
        P    G    L   RWISDSRDEYTKERLEAI+DEFKLYRCHTILNCARACPKGLNPGKQI +IK LQ  G
Subjt:  PSEGYGQVVFLVLRRWISDSRDEYTKERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQLVG

AT5G65165.1 succinate dehydrogenase 2-31.8e-1452.11Show/hide
Query:  PSEGYGQVVFLVLRRWISDSRDEYTKERLEAIND-EFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQLV
        P E  G    L   RWISDSRDEY +ERL+AI + E K+YRC  I NC   CPKGLNP   I  +K   L+
Subjt:  PSEGYGQVVFLVLRRWISDSRDEYTKERLEAIND-EFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQLV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGAGAGGAAGAATAGGTATCAGGGTATCAGAAAGAATTGAAGAAACTGGAGAACTTTTGAGGTATGCCAAAGCGTGTGTTCATCTGCCATTAGTGGGCCTGGA
GATTGGGCACAGCATATGCCTAGGTGTGTCTAGGTTGAGAAACTTTTTAATACGACACAATAAGTATTTGTACACCTCTGGCGGTACTAGCAAACCAGTAGTTTCTTATT
TCACACTACTTTTACCTAGTGAAGGATATGGTCAGGTTGTCTTCTTAGTTCTAAGAAGGTGGATAAGCGATAGCCGTGATGAATATACCAAGGAACGACTTGAGGCAATA
AATGATGAATTCAAGCTTTATCGTTGTCATACTATTCTGAACTGTGCCCGTGCCTGTCCCAAGGGTTTGAACCCCGGAAAACAGATCCAAAATATCAAACACCTTCAGCT
TGTGGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGAGAGGAAGAATAGGTATCAGGGTATCAGAAAGAATTGAAGAAACTGGAGAACTTTTGAGGTATGCCAAAGCGTGTGTTCATCTGCCATTAGTGGGCCTGGA
GATTGGGCACAGCATATGCCTAGGTGTGTCTAGGTTGAGAAACTTTTTAATACGACACAATAAGTATTTGTACACCTCTGGCGGTACTAGCAAACCAGTAGTTTCTTATT
TCACACTACTTTTACCTAGTGAAGGATATGGTCAGGTTGTCTTCTTAGTTCTAAGAAGGTGGATAAGCGATAGCCGTGATGAATATACCAAGGAACGACTTGAGGCAATA
AATGATGAATTCAAGCTTTATCGTTGTCATACTATTCTGAACTGTGCCCGTGCCTGTCCCAAGGGTTTGAACCCCGGAAAACAGATCCAAAATATCAAACACCTTCAGCT
TGTGGGTTGA
Protein sequenceShow/hide protein sequence
MEMRGRIGIRVSERIEETGELLRYAKACVHLPLVGLEIGHSICLGVSRLRNFLIRHNKYLYTSGGTSKPVVSYFTLLLPSEGYGQVVFLVLRRWISDSRDEYTKERLEAI
NDEFKLYRCHTILNCARACPKGLNPGKQIQNIKHLQLVG