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HG10011427 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10011427
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionProtein TIC 20
Genome locationChr01:5907868..5908089
RNA-Seq ExpressionHG10011427
SyntenyHG10011427
Gene Ontology termsGO:0009579 - thylakoid (cellular component)
GO:0009706 - chloroplast inner membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR005691 - Chloroplast protein import component Tic20


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004148263.1 protein TIC 20-v, chloroplastic [Cucumis sativus]2.4e-30100Show/hide
Query:  MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
        MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
Subjt:  MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
XP_022932396.1 protein TIC 20-v, chloroplastic [Cucurbita moschata]3.2e-3098.63Show/hide
Query:  MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
        MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQ+PRLPIVADAADRQVM
Subjt:  MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
XP_022965178.1 protein TIC 20-v, chloroplastic [Cucurbita maxima]3.2e-3098.63Show/hide
Query:  MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
        MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQ+PRLPIVADAADRQVM
Subjt:  MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
XP_023553383.1 protein TIC 20-v, chloroplastic [Cucurbita pepo subsp. pepo]3.2e-3098.63Show/hide
Query:  MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
        MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQ+PRLPIVADAADRQVM
Subjt:  MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
XP_038905184.1 protein TIC 20-v, chloroplastic [Benincasa hispida]2.4e-30100Show/hide
Query:  MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
        MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
Subjt:  MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
TrEMBL top hitse value%identityAlignment
A0A0A0L632 Protein TIC 201.2e-30100Show/hide
Query:  MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
        MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
Subjt:  MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
A0A1S3BM16 Protein TIC 202.0e-3098.63Show/hide
Query:  MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
        MQAIVLDVLLIFPDLLERSFNPRGG+GLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
Subjt:  MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
A0A5D3CPD4 Protein TIC 202.0e-3098.63Show/hide
Query:  MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
        MQAIVLDVLLIFPDLLERSFNPRGG+GLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
Subjt:  MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
A0A6J1EW92 Protein TIC 201.5e-3098.63Show/hide
Query:  MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
        MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQ+PRLPIVADAADRQVM
Subjt:  MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
A0A6J1HN42 Protein TIC 201.5e-3098.63Show/hide
Query:  MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
        MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQ+PRLPIVADAADRQVM
Subjt:  MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
SwissProt top hitse value%identityAlignment
O82251 Protein TIC 20-II, chloroplastic8.5e-1048.65Show/hide
Query:  MQAIVLDVLLIFPDLLERSFNP--RGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQV
        MQA+ LDVLL  P LL R  +P   GG G+  +M   + VF+F  +C +YG  S LLG+ P +P VADAA RQ+
Subjt:  MQAIVLDVLLIFPDLLERSFNP--RGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQV
Q9FM67 Protein TIC 20-v, chloroplastic2.2e-2682.19Show/hide
Query:  MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
        MQAIVLDVLLIFPDLLERSFNPR G GLD+VMSLDSTVFLFLL+ LIYG S+CL G  PRLP+VA+AADRQV+
Subjt:  MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
Arabidopsis top hitse value%identityAlignment
AT2G47840.1 Uncharacterised conserved protein ycf606.0e-1148.65Show/hide
Query:  MQAIVLDVLLIFPDLLERSFNP--RGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQV
        MQA+ LDVLL  P LL R  +P   GG G+  +M   + VF+F  +C +YG  S LLG+ P +P VADAA RQ+
Subjt:  MQAIVLDVLLIFPDLLERSFNP--RGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQV
AT5G55710.1 FUNCTIONS IN: molecular_function unknown1.6e-2782.19Show/hide
Query:  MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
        MQAIVLDVLLIFPDLLERSFNPR G GLD+VMSLDSTVFLFLL+ LIYG S+CL G  PRLP+VA+AADRQV+
Subjt:  MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGCCATTGTTCTTGACGTGCTTCTGATTTTTCCTGATCTTTTGGAAAGGAGCTTCAATCCTAGAGGGGGATTAGGGTTGGATTTGGTCATGAGTTTGGATAGTAC
TGTGTTCCTGTTTCTTTTGATTTGTTTGATTTATGGCTCTTCTTCTTGCTTGTTGGGTCAGATCCCTAGATTGCCCATTGTTGCTGATGCTGCTGATAGGCAAGTTATGT
GA
mRNA sequenceShow/hide mRNA sequence
ATGCAAGCCATTGTTCTTGACGTGCTTCTGATTTTTCCTGATCTTTTGGAAAGGAGCTTCAATCCTAGAGGGGGATTAGGGTTGGATTTGGTCATGAGTTTGGATAGTAC
TGTGTTCCTGTTTCTTTTGATTTGTTTGATTTATGGCTCTTCTTCTTGCTTGTTGGGTCAGATCCCTAGATTGCCCATTGTTGCTGATGCTGCTGATAGGCAAGTTATGT
GA
Protein sequenceShow/hide protein sequence
MQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM