; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10011448 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10011448
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionTHO complex subunit 3
Genome locationChr01:6122288..6123848
RNA-Seq ExpressionHG10011448
SyntenyHG10011448
Gene Ontology termsGO:0006406 - mRNA export from nucleus (biological process)
GO:0010267 - production of ta-siRNAs involved in RNA interference (biological process)
GO:0000445 - THO complex part of transcription export complex (cellular component)
GO:0005509 - calcium ion binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR001680 - WD40 repeat
IPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR019775 - WD40 repeat, conserved site
IPR036322 - WD40-repeat-containing domain superfamily
IPR040132 - TREX component Tex1/THOC3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065764.1 THO complex subunit 3 [Cucumis melo var. makuwa]6.5e-5097.94Show/hide
Query:  MEESAPIFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR
        MEESA  FKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR
Subjt:  MEESAPIFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR

XP_004149572.1 THO complex subunit 3 [Cucumis sativus]6.5e-5097.94Show/hide
Query:  MEESAPIFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR
        MEESA  FKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR
Subjt:  MEESAPIFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR

XP_022155009.1 THO complex subunit 3 isoform X2 [Momordica charantia]3.6e-4895.88Show/hide
Query:  MEESAPIFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR
        MEE+A  FKNL SREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR
Subjt:  MEESAPIFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR

XP_022946738.1 THO complex subunit 3 [Cucurbita moschata]1.1e-4996.91Show/hide
Query:  MEESAPIFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR
        MEES P FKNL+SREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR
Subjt:  MEESAPIFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR

XP_038905145.1 THO complex subunit 3 [Benincasa hispida]2.0e-51100Show/hide
Query:  MEESAPIFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR
        MEESAPIFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR
Subjt:  MEESAPIFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR

TrEMBL top hitse value%identityAlignment
A0A0A0L651 WD_REPEATS_REGION domain-containing protein3.2e-5097.94Show/hide
Query:  MEESAPIFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR
        MEESA  FKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR
Subjt:  MEESAPIFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR

A0A1S3BM38 THO complex subunit 33.2e-5097.94Show/hide
Query:  MEESAPIFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR
        MEESA  FKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR
Subjt:  MEESAPIFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR

A0A5D3BC11 THO complex subunit 33.2e-5097.94Show/hide
Query:  MEESAPIFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR
        MEESA  FKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR
Subjt:  MEESAPIFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR

A0A6J1G4N9 THO complex subunit 35.4e-5096.91Show/hide
Query:  MEESAPIFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR
        MEES P FKNL+SREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR
Subjt:  MEESAPIFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR

A0A6J1KZA7 THO complex subunit 35.4e-5096.91Show/hide
Query:  MEESAPIFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR
        MEES P FKNL+SREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR
Subjt:  MEESAPIFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR

SwissProt top hitse value%identityAlignment
P14197 WD repeat-containing protein AAC38.4e-1635.51Show/hide
Query:  FKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHG----------------HGKVKD-VELKGHTDSVDQLCWDPKHSDLIATASGDKT
        F    ++++ G+KKK  SVAWN  G K+AS   D   RVW+ +P G                +  +K+ +ELKGH  S++++ W PK++DL+A+A  DK 
Subjt:  FKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHG----------------HGKVKD-VELKGHTDSVDQLCWDPKHSDLIATASGDKT

Query:  VRLWDAR
        +++WD +
Subjt:  VRLWDAR

Q29RH4 THO complex subunit 37.8e-2256.47Show/hide
Query:  SREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR
        +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   +GH DSVDQLCW P + DL  TASGDKT+R+WD R
Subjt:  SREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR

Q8VE80 THO complex subunit 37.8e-2256.47Show/hide
Query:  SREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR
        +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   +GH DSVDQLCW P + DL  TASGDKT+R+WD R
Subjt:  SREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR

Q96J01 THO complex subunit 31.0e-2156.47Show/hide
Query:  SREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR
        +RE+  H  KVHSVAW+C G +LASGS D+TA V+ +E      VK+   +GH DSVDQLCW P + DL  TASGDKT+R+WD R
Subjt:  SREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR

Q9FKT5 THO complex subunit 31.7e-4584.54Show/hide
Query:  MEESAPIFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR
        MEE+   FK+LHSREYQGHKKKVHSVAWN  G KLASGSVDQTAR+W+IEPHGH K KD+ELKGHTDSVDQLCWDPKHSDL+ATASGDK+VRLWDAR
Subjt:  MEESAPIFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR

Arabidopsis top hitse value%identityAlignment
AT1G29260.1 peroxin 73.2e-1035.96Show/hide
Query:  REYQGHKKKVHSVAWNCTGM-KLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARRSGN
        R +Q H ++V SV +N T      + S D T ++W ++     +      K H   V Q  W+PKH D+ A+ASGD T+R+WD R  G+
Subjt:  REYQGHKKKVHSVAWNCTGM-KLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARRSGN

AT2G19540.1 Transducin family protein / WD-40 repeat family protein3.9e-0830.21Show/hide
Query:  SAPIFKNLHSREYQGHKKKVHSVAWN-CTGMKLASGSVDQTARVWHIEP-HGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR
        ++P+        + GHK + +++ W+  T  +L SG       +W  EP  G   V  +   GHT SV+ L W P   ++ A+ S D +V +WD R
Subjt:  SAPIFKNLHSREYQGHKKKVHSVAWN-CTGMKLASGSVDQTARVWHIEP-HGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR

AT3G05090.1 Transducin/WD40 repeat-like superfamily protein5.1e-0837.97Show/hide
Query:  QGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWD
        +GHK+ V+++A N TG  L SG  ++  RVW  +P      K ++L+GHTD+V  L  D        + S D  +RLWD
Subjt:  QGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWD

AT5G25150.1 TBP-associated factor 52.3e-0837.35Show/hide
Query:  YQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVE-LKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR
        Y+GH   V    ++  G   AS S D+TAR+W ++     +++ +  + GH   VD + W P + + IAT S DKTVRLWD +
Subjt:  YQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVE-LKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR

AT5G56130.1 Transducin/WD40 repeat-like superfamily protein1.2e-4684.54Show/hide
Query:  MEESAPIFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR
        MEE+   FK+LHSREYQGHKKKVHSVAWN  G KLASGSVDQTAR+W+IEPHGH K KD+ELKGHTDSVDQLCWDPKHSDL+ATASGDK+VRLWDAR
Subjt:  MEESAPIFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAATCAGCGCCAATTTTCAAGAATCTTCACAGCAGAGAGTATCAAGGTCACAAGAAGAAGGTTCATTCTGTGGCATGGAATTGCACGGGCATGAAGCTTGCTTC
CGGTTCTGTTGATCAAACTGCTCGAGTTTGGCATATTGAGCCTCACGGACATGGTAAGGTCAAGGATGTTGAGTTGAAAGGACACACTGATAGTGTAGATCAGCTATGCT
GGGACCCTAAACATTCTGATCTTATAGCGACTGCATCTGGGGACAAGACTGTTCGACTATGGGATGCTCGTAGAAGTGGAAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAATCAGCGCCAATTTTCAAGAATCTTCACAGCAGAGAGTATCAAGGTCACAAGAAGAAGGTTCATTCTGTGGCATGGAATTGCACGGGCATGAAGCTTGCTTC
CGGTTCTGTTGATCAAACTGCTCGAGTTTGGCATATTGAGCCTCACGGACATGGTAAGGTCAAGGATGTTGAGTTGAAAGGACACACTGATAGTGTAGATCAGCTATGCT
GGGACCCTAAACATTCTGATCTTATAGCGACTGCATCTGGGGACAAGACTGTTCGACTATGGGATGCTCGTAGAAGTGGAAACTGA
Protein sequenceShow/hide protein sequence
MEESAPIFKNLHSREYQGHKKKVHSVAWNCTGMKLASGSVDQTARVWHIEPHGHGKVKDVELKGHTDSVDQLCWDPKHSDLIATASGDKTVRLWDARRSGN