CuGenDBv2

Gene ID	HG10011450
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RNA polymerase II elongation factor
Genome location	Chr01:6127362..6128018
RNA-Seq Expression	HG10011450
Synteny	HG10011450
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7015562.1 hypothetical protein SDJN02_23198, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.4e-97

84.33

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Query:  ESKDSG--VHIVEFPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSS
        E+KDSG   H+VE P       +NQ +MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETK+ESLKQQIFQLCCYFFLFHALSLTLL+TSS
Subjt:  ESKDSG--VHIVEFPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSS

Query:  DPNVCKKWWVPAVAMGATSVVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISL
        DPNVC KWWVP VAMGATS VFVIVVQLKLWLYWKA+ QL+REKSENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLTW SRNF+TI L
Subjt:  DPNVCKKWWVPAVAMGATSVVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISL

Query:  FCFSAIVFAASKFILCG
         CFS IVF ASKFILCG
Subjt:  FCFSAIVFAASKFILCG

XP_004149573.1 uncharacterized protein LOC101219596 [Cucumis sativus]

7.6e-104

89.04

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Query:  MAESKDS-GVHIVEFPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS
        MAE+KDS   HIVE PV+ ENHTQN  LMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCC+FFLFHALSLTLLYTS
Subjt:  MAESKDS-GVHIVEFPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS

Query:  SDPNVCKKWWVPAVAMGATSVVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS
        SDP VCKKWWVPAV +GATS VFVIVVQLKLW+YWKA GQL++EK+ENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS
Subjt:  SDPNVCKKWWVPAVAMGATSVVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS

Query:  LFCFSAIVFAASKFILCGF
        L  FSAI+F  SKFILCGF
Subjt:  LFCFSAIVFAASKFILCGF

XP_008449068.1 PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo]

3.4e-104

89.95

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Query:  MAESKDS-GVHIVEFPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS
        MA++KDS   HIVE PV+ ENHTQN  LMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCC+FFLFHALSLTLLYTS
Subjt:  MAESKDS-GVHIVEFPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS

Query:  SDPNVCKKWWVPAVAMGATSVVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS
        SDP VCKKWWVPAV +GATS VFVIVVQLKLW+YWKA GQL+REKSENRALTRC QELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFI IS
Subjt:  SDPNVCKKWWVPAVAMGATSVVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS

Query:  LFCFSAIVFAASKFILCGF
        L  FSAIVFAASKFILCGF
Subjt:  LFCFSAIVFAASKFILCGF

XP_023553388.1 uncharacterized protein LOC111810817 [Cucurbita pepo subsp. pepo]

2.4e-97

84.26

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Query:  ESKDSG-VHIVEFPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSSD
        E++DSG  H+VE P       +NQ +MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLR+GRRETKMESLKQQIFQLCCYFFLFHALSLTLL+TSSD
Subjt:  ESKDSG-VHIVEFPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSSD

Query:  PNVCKKWWVPAVAMGATSVVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLF
        PNVC KWWVP VAMGATS VFVIVVQLKLWLYWKA+ QL+REKSENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLTW SRNF+TI L 
Subjt:  PNVCKKWWVPAVAMGATSVVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLF

Query:  CFSAIVFAASKFILCG
        CFS IVF ASKFILCG
Subjt:  CFSAIVFAASKFILCG

XP_038905570.1 uncharacterized protein LOC120091553 [Benincasa hispida]

1.6e-109

92.66

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Query:  MAESKDSGVHIVEFPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSS
        MAE+KDSG HIVE PV+ ENHTQNQ  MISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCC+FFLFHALSLTLLYTSS
Subjt:  MAESKDSGVHIVEFPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSS

Query:  DPNVCKKWWVPAVAMGATSVVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISL
        DPNVCKKWWVPAVAMGATS VFVIVVQLKLWLYWKA+GQL+REK+ENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITI L
Subjt:  DPNVCKKWWVPAVAMGATSVVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISL

Query:  FCFSAIVFAASKFILCGF
          FSAIVFAASKFILC F
Subjt:  FCFSAIVFAASKFILCGF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2U7 Uncharacterized protein

3.7e-104

89.04

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Query:  MAESKDS-GVHIVEFPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS
        MAE+KDS   HIVE PV+ ENHTQN  LMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCC+FFLFHALSLTLLYTS
Subjt:  MAESKDS-GVHIVEFPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS

Query:  SDPNVCKKWWVPAVAMGATSVVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS
        SDP VCKKWWVPAV +GATS VFVIVVQLKLW+YWKA GQL++EK+ENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS
Subjt:  SDPNVCKKWWVPAVAMGATSVVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS

Query:  LFCFSAIVFAASKFILCGF
        L  FSAI+F  SKFILCGF
Subjt:  LFCFSAIVFAASKFILCGF

A0A1S3BL81 uncharacterized protein LOC103491049

1.7e-104

89.95

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Query:  MAESKDS-GVHIVEFPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS
        MA++KDS   HIVE PV+ ENHTQN  LMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCC+FFLFHALSLTLLYTS
Subjt:  MAESKDS-GVHIVEFPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTS

Query:  SDPNVCKKWWVPAVAMGATSVVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS
        SDP VCKKWWVPAV +GATS VFVIVVQLKLW+YWKA GQL+REKSENRALTRC QELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFI IS
Subjt:  SDPNVCKKWWVPAVAMGATSVVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS

Query:  LFCFSAIVFAASKFILCGF
        L  FSAIVFAASKFILCGF
Subjt:  LFCFSAIVFAASKFILCGF

A0A2P6QLA8 Uncharacterized protein

5.4e-71

60.63

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Query:  MAESKDSGVHIVEFPV--QHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYT
        MAE KD   H+VE PV  +H+    +   +IS IQHHPL +ISES GHLLLLKLW+R+E LFG RI RRET+M+ ++++IFQLCC+F +FHA  LT+L+T
Subjt:  MAESKDSGVHIVEFPV--QHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYT

Query:  S---SDPNVCKKWWVPAVAMGATSVVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNF
        S   S+   C+KWW+P++   +TSVVFV++VQ+ LW YWK  GQL+REK ENRAL RC+QELRMKG+ F+LSKEPQ G R+KSSSVEIKW P+TW S+N 
Subjt:  S---SDPNVCKKWWVPAVAMGATSVVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNF

Query:  ITISLFCFSAIVFAASKFILC
        ITI L CF+ +VF ASK +LC
Subjt:  ITISLFCFSAIVFAASKFILC

A0A6J1EWB5 uncharacterized protein LOC111438709

3.7e-96

83.87

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Query:  ESKDSG--VHIVEFPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSS
        E+KDSG   H+VE P       +NQ +MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETK+ESLKQQIFQLCCYFFLFHALSLTLL+TSS
Subjt:  ESKDSG--VHIVEFPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSS

Query:  DPNVCKKWWVPAVAMGATSVVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISL
        DPNVC KWWVP VAMGATS VFVIVVQLKLWLYWKA+ QL+REKSENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLT  SRNF+TI L
Subjt:  DPNVCKKWWVPAVAMGATSVVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISL

Query:  FCFSAIVFAASKFILCG
         CFS IVF ASKFILCG
Subjt:  FCFSAIVFAASKFILCG

A0A6J1HN07 uncharacterized protein LOC111465114

9.7e-97

84.33

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Query:  ESKDSG--VHIVEFPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSS
        E+KDSG   HIVE P       +NQ +MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETK+ESLKQQIFQLCCYFFLFHALSLTLL+TSS
Subjt:  ESKDSG--VHIVEFPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSS

Query:  DPNVCKKWWVPAVAMGATSVVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISL
        DPNVC KWWVP VAMGATS VFVIVVQLKLWLYWKA+ QL+REKSENRALTR VQELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLTW SRNF+TI L
Subjt:  DPNVCKKWWVPAVAMGATSVVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISL

Query:  FCFSAIVFAASKFILCG
         CFS IVF ASKFILCG
Subjt:  FCFSAIVFAASKFILCG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G12870.1 unknown protein

2.3e-26

36.32

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Query:  HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLY-------TSSDPNVCKKWWVPAVAMGATSVVFVIVVQ
        HPL QI+++  H LLLK W ++E L   R+  +E++++S++++I QL  +FFLFH++SL LL+       +S+  + CK+ W+P++    +S+  +  V+
Subjt:  HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLY-------TSSDPNVCKKWWVPAVAMGATSVVFVIVVQ

Query:  LKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPL-TWFSRNFITISLFCFSAIVFAASKFILC
         K  +       L REK + + L +CV+EL+ KG  F+L KE     R KS  VE K  P+  W +R+F+T+  F  S +V A  + ILC
Subjt:  LKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPL-TWFSRNFITISLFCFSAIVFAASKFILC

AT5G56120.1 unknown protein

6.3e-64

53.78

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Query:  MAESKDSGVHIVEFPV--QHENHTQNQTL---------MISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFH
        MA +KDS  H+VE PV  +H+   Q Q L         ++ VIQ HPL +ISES GHLLLLKLWQR+E LF  R+  +E+++ES+K++IFQLCC+F +FH
Subjt:  MAESKDSGVHIVEFPV--QHENHTQNQTL---------MISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFH

Query:  ALSLTLLYTSSDPN---------VCKKWWVPAVAMGATSVVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSS
            TL+Y+SS  +         VCKKWW+P+    ATS+V V +VQ KL+++WK    + RE+++NR LTRCV ELRMKGS F+LSKEP  G RMKSSS
Subjt:  ALSLTLLYTSSDPN---------VCKKWWVPAVAMGATSVVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSS

Query:  VEIKWGPLTWFSRNFITISLFCFSAIVFAASKFILCGF
        VEIKW P+TWFS+  ITI L C + + F  SKFILCGF
Subjt:  VEIKWGPLTWFSRNFITISLFCFSAIVFAASKFILCGF

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCGGAATCCAAAGATTCAGGCGTCCACATAGTTGAATTCCCAGTACAACACGAAAACCACACTCAGAATCAAACCCTTATGATCTCTGTAATTCAACACCAC
CCATTGAGGCAAATTTCCGAAAGCTCTGGTCATTTATTACTCTTGAAGCTTTGGCAACGAGACGAGCATCTCTTCGGTCTTCGAATCGGACGTCGAGAGACCAAA
ATGGAGTCTTTAAAGCAACAGATCTTCCAACTCTGTTGCTACTTCTTCCTCTTCCATGCCCTCTCTCTTACTCTCTTGTACACTTCTTCTGATCCCAATGTGTGC
AAAAAATGGTGGGTTCCGGCCGTGGCAATGGGGGCAACGTCGGTGGTGTTCGTGATCGTTGTGCAGCTGAAATTGTGGCTGTATTGGAAGGCAACAGGGCAGTTA
CGGAGGGAGAAGAGTGAGAACAGAGCACTTACAAGATGTGTTCAAGAACTTAGAATGAAAGGTTCTTGTTTTAATTTGTCTAAAGAGCCTCAAATTGGTAATAGG
ATGAAGAGTTCTAGTGTGGAGATTAAATGGGGGCCTCTCACTTGGTTTTCTAGAAATTTCATCACCATTTCTCTTTTTTGCTTTTCTGCCATTGTTTTTGCTGCT
TCAAAGTTCATACTTTGTGGCTTTTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MAESKDSGVHIVEFPVQHENHTQNQTLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCYFFLFHALSLTLLYTSSDPNVC
KKWWVPAVAMGATSVVFVIVVQLKLWLYWKATGQLRREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLFCFSAIVFAA
SKFILCGF

HG10011450 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome