; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10011463 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10011463
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionExopolygalacturonase-like
Genome locationChr01:6273034..6279018
RNA-Seq ExpressionHG10011463
SyntenyHG10011463
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065793.1 exopolygalacturonase-like [Cucumis melo var. makuwa]1.7e-4448.58Show/hide
Query:  MIIKGPCHGFIRIQLDGELLAPADKHFATGNYWLSFNQVNNLFIDGLGRLDDRGSTSWPYNSANRPI---------------------------------
        ++++GPCHGFI IQLDGELLAP +++  TG+YWLS ++VNNLFIDGLGRL+ RGST+WP  S NRPI                                 
Subjt:  MIIKGPCHGFIRIQLDGELLAPADKHFATGNYWLSFNQVNNLFIDGLGRLDDRGSTSWPYNSANRPI---------------------------------

Query:  ----------------ETLHL---------------------LGSCKQFINISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGVRIKSWS
                        + +H+                     LG   +FINI+NVQCGPGHGISIGSLGKYPN+EDVFEVTVRDST +GT+NG RIK+WS
Subjt:  ----------------ETLHL---------------------LGSCKQFINISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGVRIKSWS

Query:  SSYSSMVSKIIY
        SSYS+MVSKI +
Subjt:  SSYSSMVSKIIY

KAA0065794.1 exopolygalacturonase-like [Cucumis melo var. makuwa]1.4e-4648.62Show/hide
Query:  MIIKGPCHGFIRIQLDGELLAPADKHFATGNYWLSFNQVNNLFIDGLGRLDDRGSTSWPYNSANRPIETLHL----------------------------
        ++++GPCHG IRIQLDGELLAP+DK FATG+YWLS   VNNLFIDGLGRL   GS++WP +SANRPI   HL                            
Subjt:  MIIKGPCHGFIRIQLDGELLAPADKHFATGNYWLSFNQVNNLFIDGLGRLDDRGSTSWPYNSANRPIETLHL----------------------------

Query:  ------------------------------------------------LGSCKQFINISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGV
                                                        LG   + INI+NV CGPGHGISIGSLGKYPN+E+VFEVTVRDST VGT+NG 
Subjt:  ------------------------------------------------LGSCKQFINISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGV

Query:  RIKSWSSSYSSMVSKIIY
        RIKSWSSSYSSMVSK+ +
Subjt:  RIKSWSSSYSSMVSKIIY

XP_031738767.1 exopolygalacturonase [Cucumis sativus]7.2e-5151.42Show/hide
Query:  MIIKGPCHGFIRIQLDGELLAPADKHFATGNYWLSFNQVNNLFIDGLGRLDDRGSTSWPYNSANRPI---------------------------------
        ++++GPCHGFIRIQLDGELLAP D+HFATG+YWLS +QVNNLFIDGLG LD RGST+WP  S NRP+                                 
Subjt:  MIIKGPCHGFIRIQLDGELLAPADKHFATGNYWLSFNQVNNLFIDGLGRLDDRGSTSWPYNSANRPI---------------------------------

Query:  ----------------ETLHL---------------------LGSCKQFINISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGVRIKSWS
                        + +H+                     LG   +FINI+N+QCGPGHGISIGSLGKYPN+EDVFEVTVRDST +GTSNGVRIK+WS
Subjt:  ----------------ETLHL---------------------LGSCKQFINISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGVRIKSWS

Query:  SSYSSMVSKIIY
        SSYSSMVSK+ +
Subjt:  SSYSSMVSKIIY

XP_038904214.1 exopolygalacturonase-like [Benincasa hispida]5.5e-5150.47Show/hide
Query:  MIIKGPCHGFIRIQLDGELLAPADKHFATGNYWLSFNQVNNLFIDGLGRLDDRGSTSWPYNSANRPI---------------------------------
        ++++GPCHGFI IQLDGELLAP +K FATG+YWLS NQVNNLFIDGLGRL+ RGST+WPY+SA+RP+                                 
Subjt:  MIIKGPCHGFIRIQLDGELLAPADKHFATGNYWLSFNQVNNLFIDGLGRLDDRGSTSWPYNSANRPI---------------------------------

Query:  ----------------ETLHL---------------------LGSCKQFINISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGVRIKSWS
                        + +H+                     LG   +FINI+N+QCGPGHGISIGSLGKYPN+EDVFEVT+RDS  +GTSNGVRIKSWS
Subjt:  ----------------ETLHL---------------------LGSCKQFINISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGVRIKSWS

Query:  SSYSSMVSKIIYQS
        SSYSS+VSK+ Y++
Subjt:  SSYSSMVSKIIYQS

XP_038904218.1 exopolygalacturonase-like [Benincasa hispida]5.0e-5252.34Show/hide
Query:  MIIKGPCHGFIRIQLDGELLAPADKHFATGNYWLSFNQVNNLFIDGLGRLDDRGSTSWPYNSANRPI---------------------------------
        ++++GPCHGFIRIQ DGELLAP D HFATGNYWLS NQVNNLFIDGLGRL+ RGST+W Y SANRPI                                 
Subjt:  MIIKGPCHGFIRIQLDGELLAPADKHFATGNYWLSFNQVNNLFIDGLGRLDDRGSTSWPYNSANRPI---------------------------------

Query:  ----------------ETLHL---------------------LGSCKQFINISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGVRIKSWS
                        + +H+                     LG   +FINI+NV+CGPGHGISIGSLGKYPN+ED+FEVTVRDST +GTSNGVRIKSW 
Subjt:  ----------------ETLHL---------------------LGSCKQFINISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGVRIKSWS

Query:  SSYSSMVSKIIYQS
        SSYSSMVSK+ Y +
Subjt:  SSYSSMVSKIIYQS

TrEMBL top hitse value%identityAlignment
A0A0A0L7H9 Uncharacterized protein3.5e-5151.42Show/hide
Query:  MIIKGPCHGFIRIQLDGELLAPADKHFATGNYWLSFNQVNNLFIDGLGRLDDRGSTSWPYNSANRPI---------------------------------
        ++++GPCHGFIRIQLDGELLAP D+HFATG+YWLS +QVNNLFIDGLG LD RGST+WP  S NRP+                                 
Subjt:  MIIKGPCHGFIRIQLDGELLAPADKHFATGNYWLSFNQVNNLFIDGLGRLDDRGSTSWPYNSANRPI---------------------------------

Query:  ----------------ETLHL---------------------LGSCKQFINISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGVRIKSWS
                        + +H+                     LG   +FINI+N+QCGPGHGISIGSLGKYPN+EDVFEVTVRDST +GTSNGVRIK+WS
Subjt:  ----------------ETLHL---------------------LGSCKQFINISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGVRIKSWS

Query:  SSYSSMVSKIIY
        SSYSSMVSK+ +
Subjt:  SSYSSMVSKIIY

A0A1S4DX91 exopolygalacturonase-like1.1e-4448.11Show/hide
Query:  MIIKGPCHGFIRIQLDGELLAPADKHFATGNYWLSFNQVNNLFIDGLGRLDDRGSTSWPYNSANRPI---------------------------------
        ++++GPCHGFI IQLDGELLAP +++  TG+YWLS ++VNNLFIDGLGRL+ RGST+WP  S NRPI                                 
Subjt:  MIIKGPCHGFIRIQLDGELLAPADKHFATGNYWLSFNQVNNLFIDGLGRLDDRGSTSWPYNSANRPI---------------------------------

Query:  ----------------ETLHL---------------------LGSCKQFINISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGVRIKSWS
                        + +H+                     LG   +FINI+NVQCGPGHGISIGSLGKYPN+EDVFEVTVRDST +GT+NG RIK+WS
Subjt:  ----------------ETLHL---------------------LGSCKQFINISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGVRIKSWS

Query:  SSYSSMVSKIIY
        SSYS+MVSK+ +
Subjt:  SSYSSMVSKIIY

A0A5D3B9J1 Exopolygalacturonase-like8.3e-4548.58Show/hide
Query:  MIIKGPCHGFIRIQLDGELLAPADKHFATGNYWLSFNQVNNLFIDGLGRLDDRGSTSWPYNSANRPI---------------------------------
        ++++GPCHGFI IQLDGELLAP +++  TG+YWLS ++VNNLFIDGLGRL+ RGST+WP  S NRPI                                 
Subjt:  MIIKGPCHGFIRIQLDGELLAPADKHFATGNYWLSFNQVNNLFIDGLGRLDDRGSTSWPYNSANRPI---------------------------------

Query:  ----------------ETLHL---------------------LGSCKQFINISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGVRIKSWS
                        + +H+                     LG   +FINI+NVQCGPGHGISIGSLGKYPN+EDVFEVTVRDST +GT+NG RIK+WS
Subjt:  ----------------ETLHL---------------------LGSCKQFINISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGVRIKSWS

Query:  SSYSSMVSKIIY
        SSYS+MVSKI +
Subjt:  SSYSSMVSKIIY

A0A5D3BB58 Exopolygalacturonase-like6.8e-4748.62Show/hide
Query:  MIIKGPCHGFIRIQLDGELLAPADKHFATGNYWLSFNQVNNLFIDGLGRLDDRGSTSWPYNSANRPIETLHL----------------------------
        ++++GPCHG IRIQLDGELLAP+DK FATG+YWLS   VNNLFIDGLGRL   GS++WP +SANRPI   HL                            
Subjt:  MIIKGPCHGFIRIQLDGELLAPADKHFATGNYWLSFNQVNNLFIDGLGRLDDRGSTSWPYNSANRPIETLHL----------------------------

Query:  ------------------------------------------------LGSCKQFINISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGV
                                                        LG   + INI+NV CGPGHGISIGSLGKYPN+E+VFEVTVRDST VGT+NG 
Subjt:  ------------------------------------------------LGSCKQFINISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGV

Query:  RIKSWSSSYSSMVSKIIY
        RIKSWSSSYSSMVSK+ +
Subjt:  RIKSWSSSYSSMVSKIIY

A0A6J1F153 exopolygalacturonase-like9.9e-3841.51Show/hide
Query:  MIIKGPCHGFIRIQLDGELLAPADKHFATGNYWLSFNQVNNLFIDGLGRLDDRGSTSWPYNSANRPI---------------------------------
        ++++GPC   I + + GELLAP  K+FATG YWLS ++V+NLF+DG G L+  GS++WP +++NRP+                                 
Subjt:  MIIKGPCHGFIRIQLDGELLAPADKHFATGNYWLSFNQVNNLFIDGLGRLDDRGSTSWPYNSANRPI---------------------------------

Query:  ----------------ETLHL---------------------LGSCKQFINISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGVRIKSWS
                        + +H+                     LG   +FINI+++QCGPGHGISIGSLGKYPN+EDV EVT+RDST VGT NGVRIK+WS
Subjt:  ----------------ETLHL---------------------LGSCKQFINISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGVRIKSWS

Query:  SSYSSMVSKIIY
        SS+SS VSKI +
Subjt:  SSYSSMVSKIIY

SwissProt top hitse value%identityAlignment
P24548 Exopolygalacturonase (Fragment)3.4e-1927.93Show/hide
Query:  MMIIKGPCHGFIRIQLDGELLAPADKHFATGNYWLSFNQVNNLFIDGLGRLDDRGSTSWPYNSA--NRPI------------------------------
        ++ ++GPC   I +QL G L APAD     G  W++ N+++ L I G G  D +G ++W  N    N PI                              
Subjt:  MMIIKGPCHGFIRIQLDGELLAPADKHFATGNYWLSFNQVNNLFIDGLGRLDDRGSTSWPYNSA--NRPI------------------------------

Query:  -------------------------ETLHL---------------------LGSCKQFINISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTS
                                 + +H+                     LG   + INI+N+ CGPGHGIS+GSLG+Y N+E V  + V++ T+ G+ 
Subjt:  -------------------------ETLHL---------------------LGSCKQFINISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTS

Query:  NGVRIKSWSSSYSSMVSKIIYQ
        NGVRIK+W  S     S++ +Q
Subjt:  NGVRIKSWSSSYSSMVSKIIYQ

P26216 Exopolygalacturonase4.2e-1729.68Show/hide
Query:  GPCHGFIRIQLDGELLAPAD-KHFATGNYWLSFNQVNNLFIDGLGRLDDRGSTSWPYNSA-------------------NRPIETLHLLGS---------
        GPC G + IQ+DG LLA  D   +     W+   +V+NL I G G LD +G   W  NS                    N  +  + LL S         
Subjt:  GPCHGFIRIQLDGELLAPAD-KHFATGNYWLSFNQVNNLFIDGLGRLDDRGSTSWPYNSA-------------------NRPIETLHLLGS---------

Query:  CKQF-------------------------------------------------INISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGVRI
        CK                                                   +NI+ V CGPGHGISIGSLG+Y +++DV ++ V+D T+  T  GVRI
Subjt:  CKQF-------------------------------------------------INISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGVRI

Query:  KSWSSSYSSM-VSKIIYQS
        K++  + S + VSKI Y++
Subjt:  KSWSSSYSSM-VSKIIYQS

P35338 Exopolygalacturonase4.2e-1729.68Show/hide
Query:  GPCHGFIRIQLDGELLAPAD-KHFATGNYWLSFNQVNNLFIDGLGRLDDRGSTSWPYNSA-------------------NRPIETLHLLGS---------
        GPC G + IQ+DG LLA  D   +     W+   +V+NL I G G LD +G   W  NS                    N  +  + LL S         
Subjt:  GPCHGFIRIQLDGELLAPAD-KHFATGNYWLSFNQVNNLFIDGLGRLDDRGSTSWPYNSA-------------------NRPIETLHLLGS---------

Query:  CKQF-------------------------------------------------INISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGVRI
        CK                                                   +NI+ V CGPGHGISIGSLG+Y +++DV ++ V+D T+  T  GVRI
Subjt:  CKQF-------------------------------------------------INISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGVRI

Query:  KSWSSSYSSM-VSKIIYQS
        K++  + S + VSKI Y++
Subjt:  KSWSSSYSSM-VSKIIYQS

P35339 Exopolygalacturonase1.1e-1729.22Show/hide
Query:  GPCHGFIRIQLDGELLAPAD-KHFATGNYWLSFNQVNNLFIDGLGRLDDRGSTSWPYNSA-------------------NRPIETLHLLGS---------
        GPC G + IQ++G LLA  D   +     W+   +V+NL I G G+LD +G   W  NS                    N  +  + LL S         
Subjt:  GPCHGFIRIQLDGELLAPAD-KHFATGNYWLSFNQVNNLFIDGLGRLDDRGSTSWPYNSA-------------------NRPIETLHLLGS---------

Query:  CKQF-------------------------------------------------INISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGVRI
        CK                                                   +NI+ V CGPGHGISIGSLG+Y +++DV ++ V+D T+  T+NGVRI
Subjt:  CKQF-------------------------------------------------INISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGVRI

Query:  KSWSSSYSSM-VSKIIYQS
        K++  + S +  SKI Y++
Subjt:  KSWSSSYSSM-VSKIIYQS

Q40312 Polygalacturonase1.9e-1424.88Show/hide
Query:  IKGPCHGFIRIQLDGELLAPADKHFATG-NYWLSFNQVNNLFIDGLGRLDDRGST---------SWPYNSANRPI-------------------------
        +KGPC   I +Q+DG + APAD     G   W  F  +++L + G G  D +G+T         +W   ++N  +                         
Subjt:  IKGPCHGFIRIQLDGELLAPADKHFATG-NYWLSFNQVNNLFIDGLGRLDDRGST---------SWPYNSANRPI-------------------------

Query:  --------------------------ETLHL---------------------LGSCKQFINISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGT
                                  + +H+                     +G   + I +  V CGPGHG+S+GSLGK+  +E+V  +TV++ T+  T
Subjt:  --------------------------ETLHL---------------------LGSCKQFINISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGT

Query:  SNGVRIKSW
         NGVRIK+W
Subjt:  SNGVRIKSW

Arabidopsis top hitse value%identityAlignment
AT1G43080.1 Pectin lyase-like superfamily protein4.0e-1556.06Show/hide
Query:  INISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGVRIKSWSSSYSS-MVSKIIYQS
        ++ISN++CGPGHGIS+GSLGK  +++DV  +TVRD+   GTS+G+RIK+W SS S  +VS  IY++
Subjt:  INISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGVRIKSWSSSYSS-MVSKIIYQS

AT1G43090.1 Pectin lyase-like superfamily protein2.3e-1557.58Show/hide
Query:  INISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGVRIKSWSSSYSSM-VSKIIYQS
        ++ISNV+CGPGHGIS+GSLGK  +++DV  +TVRD+   GTS+G+RIK+W SS S + VS  IY++
Subjt:  INISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGVRIKSWSSSYSSM-VSKIIYQS

AT1G43100.1 Pectin lyase-like superfamily protein2.3e-1557.58Show/hide
Query:  INISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGVRIKSWSSSYSSM-VSKIIYQS
        ++ISNV+CGPGHGIS+GSLGK  +++DV  +TVRD+   GTS+G+RIK+W SS S + VS  IY++
Subjt:  INISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGVRIKSWSSSYSSM-VSKIIYQS

AT3G14040.1 Pectin lyase-like superfamily protein6.8e-1549.3Show/hide
Query:  LGSCKQFINISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGVRIKSWSSSYSSMVSKIIYQ
        +G   + + + NV+CGPGHGISIGSLG+YPN++ V  VTVR   +  T NGVRIK+W  S   + S I+++
Subjt:  LGSCKQFINISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGVRIKSWSSSYSSMVSKIIYQ

AT5G39910.1 Pectin lyase-like superfamily protein4.0e-1552.78Show/hide
Query:  YNSANRPIETLHLLGSCKQFINISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGVRIKSWSS
        Y+S  R  +    +G   ++INIS + CGPGHGISIGSLG+Y  KE V  V VRD T   T+NGVRIK+W +
Subjt:  YNSANRPIETLHLLGSCKQFINISNVQCGPGHGISIGSLGKYPNKEDVFEVTVRDSTVVGTSNGVRIKSWSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGATTATAAAAGGTCCATGCCATGGCTTCATTCGTATACAACTTGACGGCGAATTGTTGGCTCCTGCCGATAAGCATTTCGCCACCGGCAACTATTGGCTTAGTTT
CAACCAAGTGAACAACTTGTTCATCGATGGCTTGGGTCGCTTGGACGATCGTGGCTCCACCTCTTGGCCTTACAACTCTGCTAACCGTCCCATCGAGACGCTGCATCTCC
TTGGGTCCTGCAAGCAATTCATCAACATAAGCAATGTTCAATGTGGTCCTGGCCATGGAATTAGCATCGGTAGCCTTGGAAAGTACCCAAACAAAGAAGACGTCTTCGAA
GTCACAGTAAGAGACTCCACCGTCGTTGGCACGTCCAATGGTGTGAGGATCAAATCATGGTCGTCTTCATATTCTAGCATGGTTAGCAAAATCATATATCAATCTCCAAA
TGAACATGTCAAAACCCTATCATCATCGATCAGAGTATTGTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGATGATTATAAAAGGTCCATGCCATGGCTTCATTCGTATACAACTTGACGGCGAATTGTTGGCTCCTGCCGATAAGCATTTCGCCACCGGCAACTATTGGCTTAGTTT
CAACCAAGTGAACAACTTGTTCATCGATGGCTTGGGTCGCTTGGACGATCGTGGCTCCACCTCTTGGCCTTACAACTCTGCTAACCGTCCCATCGAGACGCTGCATCTCC
TTGGGTCCTGCAAGCAATTCATCAACATAAGCAATGTTCAATGTGGTCCTGGCCATGGAATTAGCATCGGTAGCCTTGGAAAGTACCCAAACAAAGAAGACGTCTTCGAA
GTCACAGTAAGAGACTCCACCGTCGTTGGCACGTCCAATGGTGTGAGGATCAAATCATGGTCGTCTTCATATTCTAGCATGGTTAGCAAAATCATATATCAATCTCCAAA
TGAACATGTCAAAACCCTATCATCATCGATCAGAGTATTGTCCTAG
Protein sequenceShow/hide protein sequence
MMIIKGPCHGFIRIQLDGELLAPADKHFATGNYWLSFNQVNNLFIDGLGRLDDRGSTSWPYNSANRPIETLHLLGSCKQFINISNVQCGPGHGISIGSLGKYPNKEDVFE
VTVRDSTVVGTSNGVRIKSWSSSYSSMVSKIIYQSPNEHVKTLSSSIRVLS