CuGenDBv2

Gene ID	HG10011499
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Ribosomal protein
Genome location	Chr01:6621686..6625278
RNA-Seq Expression	HG10011499
Synteny	HG10011499
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR000529 - Ribosomal protein S6 IPR014717 - Translation elongation factor EF1B/ribosomal protein S6 IPR035980 - Ribosomal protein S6 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6596891.1 hypothetical protein SDJN03_10071, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-63

84.31

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Query:  MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCM LMKPHV+KEALLDLV RVGKHVFRRNGVV DIKSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
Subjt:  MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKSELSKSPRLSMV----VDEDEDDDDDDDEEYNVEEEEKKVE
        YGLEFLSEDDGK EL+K PR +M+     DE++DDDD+DDEEY+VE+EE+  E
Subjt:  YGLEFLSEDDGKSELSKSPRLSMV----VDEDEDDDDDDDEEYNVEEEEKKVE

XP_022936695.1 uncharacterized protein LOC111443208 [Cucurbita moschata]

9.0e-64

84.31

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Query:  MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCM LMKPHV+KEALLDLV RVGKHVFRRNGVV DIKSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRD K
Subjt:  MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKSELSKSPRLSMV----VDEDEDDDDDDDEEYNVEEEEKKVE
        YGLEFLSEDDGK+EL+K PR  M+     DE++DDDDDDDEEY+VE+EE+  E
Subjt:  YGLEFLSEDDGKSELSKSPRLSMV----VDEDEDDDDDDDEEYNVEEEEKKVE

XP_023539684.1 uncharacterized protein LOC111800294 [Cucurbita pepo subsp. pepo]

2.4e-64

84.97

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Query:  MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCM LMKPHV+KEALLDLV RVGKHVFRRNGVV DIKSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
Subjt:  MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKSELSKSPRLSMV----VDEDEDDDDDDDEEYNVEEEEKKVE
        YGLEFLSEDDGK+EL+K PR +M+     DE++DDDDDDDEEY+VE+EE+  E
Subjt:  YGLEFLSEDDGKSELSKSPRLSMV----VDEDEDDDDDDDEEYNVEEEEKKVE

XP_038903157.1 uncharacterized protein LOC120089825 [Benincasa hispida]

6.9e-64

86.09

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Query:  MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLY+CM LMKPHVKKEALLDLV RVGKHVFRRNGVVCDI+SFGVVQLGYGIKKLDGRYYQGQLMQMTMMATP+ NKELHYLNKEDRLLRWLLVKHRD K
Subjt:  MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKSELSKSPRLSMVVDE--DEDDDDDDDEEYNVEEEEKKVE
        YGLEFLSEDDGKSEL + PRLSM+ D+  DEDD+DDDDEEYNVE+E+++ E
Subjt:  YGLEFLSEDDGKSELSKSPRLSMVVDE--DEDDDDDDDEEYNVEEEEKKVE

XP_038905169.1 uncharacterized protein LOC120091279 [Benincasa hispida]

1.8e-64

85.06

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Query:  MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCM LMKPHVKKEALLDLV RVGKHVFRRNGVVCDIKSFGVVQLGYGIKKL+GRYYQGQLMQMTMMATPN+NKELHYLNKEDRLLRWLLVKHRD K
Subjt:  MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKSELSKSPRLSMVVDEDE-----DDDDDDDEEYNVEEEEKKVE
        YGLEFLSE+DGKSEL K PRL M+ D+DE     DDDD+DDEEYNVE+E+++ E
Subjt:  YGLEFLSEDDGKSELSKSPRLSMVVDEDE-----DDDDDDDEEYNVEEEEKKVE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2X6 Uncharacterized protein

3.8e-60

81.7

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Query:  MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYD MFLMKPHVKKEALLDLV RVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKEL YLNKEDRLLRW+LVKHRD +
Subjt:  MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKSELSKSPRLSMV----VDEDEDDDDDDDEEYNVEEEEKKVE
        +GLEFL EDD K+ L K  RL+++     DEDED+DDDDDEEYNVE ++ K E
Subjt:  YGLEFLSEDDGKSELSKSPRLSMV----VDEDEDDDDDDDEEYNVEEEEKKVE

A0A6J1CN79 uncharacterized protein LOC111013137

1.1e-62

84.87

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Query:  MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCM LMKPHVKKEALLDLV RVGKHVFRRNGVV DIKSFGVVQLGYGIKKLDGR+YQGQLMQMTMMATPNMNKELHYLNKEDR+LRWLLVKHRD K
Subjt:  MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKSELSKSPRLSMVVDED---EDDDDDDDEEYNVEEEEKKVE
        YGLEFLSEDD K ELSK PR+ ++ D+D   EDDDDD+DEEY+VE+EE K E
Subjt:  YGLEFLSEDDGKSELSKSPRLSMVVDED---EDDDDDDDEEYNVEEEEKKVE

A0A6J1FEF6 uncharacterized protein LOC111443208

4.4e-64

84.31

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Query:  MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCM LMKPHV+KEALLDLV RVGKHVFRRNGVV DIKSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRD K
Subjt:  MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKSELSKSPRLSMV----VDEDEDDDDDDDEEYNVEEEEKKVE
        YGLEFLSEDDGK+EL+K PR  M+     DE++DDDDDDDEEY+VE+EE+  E
Subjt:  YGLEFLSEDDGKSELSKSPRLSMV----VDEDEDDDDDDDEEYNVEEEEKKVE

A0A6J1KXT7 uncharacterized protein LOC111498530

6.9e-62

82.55

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Query:  MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCM LMKPHV+KEALLDLV RVGKHVFRRNGVV D+KSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRD K
Subjt:  MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKSELSKSPRLSMVVDEDEDDDDDDDEEYNVEEEEKKVE
        YGLEFLSEDDGK+EL+K PR SM+ D+D D++DDDD++ +VE+E ++ E
Subjt:  YGLEFLSEDDGKSELSKSPRLSMVVDEDEDDDDDDDEEYNVEEEEKKVE

A0A7N2L1D1 Uncharacterized protein

5.9e-61

81.88

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Query:  MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCM L+KPHVKKEAL++LV R+GKHV+RRNGV+ D+KSFG+VQLGYGIKKLDGRYYQGQLMQMTMMATPN+NKELHYLNKEDRLLRWLLVKHRD K
Subjt:  MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKSELSKSPRLSMVVDE--DEDDDDDDDEEYNVEEEEKK
        YGLEFLSEDDGK ELSK  R S+  D+  DEDDDDDDD+EY+V++EEKK
Subjt:  YGLEFLSEDDGKSELSKSPRLSMVVDE--DEDDDDDDDEEYNVEEEEKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G18760.1 Translation elongation factor EF1B/ribosomal protein S6 family protein

2.1e-42

63.24

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Query:  MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCM L KP ++KE L+DLV R+GKHV+ RNGV+ +IKSFG V+LGYGI+KLDGR+YQGQLMQ+TMM TPNMNKELHYLNKED+LLRWLLVKHRD K
Subjt:  MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKSELSKSPRLSMVVDEDEDDDDDDD
         G     + + +  L+   RL+     D    D+DD
Subjt:  YGLEFLSEDDGKSELSKSPRLSMVVDEDEDDDDDDD

AT3G18760.2 Translation elongation factor EF1B/ribosomal protein S6 family protein

9.0e-38

59.56

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Query:  MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK
        MPLYDCM L KP ++KE L+DLV R+GKHV+ RNGV+ +IKSFG V+LGYGI+KLDGR+Y     Q+TMM TPNMNKELHYLNKED+LLRWLLVKHRD K
Subjt:  MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAK

Query:  YGLEFLSEDDGKSELSKSPRLSMVVDEDEDDDDDDD
         G     + + +  L+   RL+     D    D+DD
Subjt:  YGLEFLSEDDGKSELSKSPRLSMVVDEDEDDDDDDD

Sequences

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CDS sequence

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ATGCCTCTTTACGATTGTATGTTTTTGATGAAACCCCATGTAAAGAAGGAGGCCTTGTTGGATTTGGTTACTAGAGTGGGCAAGCATGTGTTCAGAAGAAATGGGGTTGT
CTGTGACATTAAGTCATTTGGTGTTGTCCAACTGGGTTATGGTATTAAGAAGCTTGATGGAAGATATTATCAGGGCCAACTTATGCAGATGACGATGATGGCTACTCCCA
ATATGAACAAGGAGTTGCATTACTTGAACAAGGAAGATCGGTTGTTGCGTTGGCTTTTAGTGAAGCACCGTGATGCAAAATATGGCCTGGAATTCCTTAGCGAAGATGAT
GGAAAGAGTGAACTCAGCAAATCTCCTCGACTTAGCATGGTGGTTGACGAAGATGAAGACGACGACGACGACGACGATGAAGAATACAACGTGGAAGAAGAAGAGAAGAA
AGTAGAGTGA

mRNA sequence

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Protein sequence

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MPLYDCMFLMKPHVKKEALLDLVTRVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDD
GKSELSKSPRLSMVVDEDEDDDDDDDEEYNVEEEEKKVE

HG10011499 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome