; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10011556 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10011556
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionprotein LHCP TRANSLOCATION DEFECT
Genome locationChr01:7141288..7143453
RNA-Seq ExpressionHG10011556
SyntenyHG10011556
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0090391 - granum assembly (biological process)
GO:0009570 - chloroplast stroma (cellular component)
GO:0009941 - chloroplast envelope (cellular component)
InterPro domainsIPR036770 - Ankyrin repeat-containing domain superfamily
IPR044242 - Protein LHCP TRANSLOCATION DEFECT-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152919.1 protein LHCP TRANSLOCATION DEFECT [Cucumis sativus]8.8e-8494.05Show/hide
Query:  MASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCT+SINLTPRSFNSRPP KLGS  LGLQS+LRW+SPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA+YDVKDVDGRTA+DRA NEEIKDFILNFS KKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA

XP_008463435.1 PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis melo]1.7e-8293.45Show/hide
Query:  MASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCTTSINLTPRSFNSRPP KL S  LGLQS+LRW+SP+SIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA+YDVKDVDGRTAIDRA NEEIKDFIL FS KKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA

XP_022932181.1 protein LHCP TRANSLOCATION DEFECT [Cucurbita moschata]9.1e-8192.26Show/hide
Query:  MASLSCT-TSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCT TSINL+P S NSRPPLKLGSQ LGLQS+LRWVSP++IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASLSCT-TSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDRAPN+EIKDFILNFSV+K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKK

XP_022985270.1 protein LHCP TRANSLOCATION DEFECT [Cucurbita maxima]1.8e-8192.86Show/hide
Query:  MASLSCT-TSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCT TSINL+P SFNSRPPLKLGSQ LGLQS+LRWVSP++IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASLSCT-TSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDRAPN+EIKDFILNFSV+K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKK

XP_038903413.1 protein LHCP TRANSLOCATION DEFECT [Benincasa hispida]4.0e-8494.64Show/hide
Query:  MASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCT S+NLTPRSFNSRPP KL SQ LGLQS+LRWVSPV+IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILN SVK A
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA

TrEMBL top hitse value%identityAlignment
A0A0A0L309 ANK_REP_REGION domain-containing protein4.3e-8494.05Show/hide
Query:  MASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCT+SINLTPRSFNSRPP KLGS  LGLQS+LRW+SPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA+YDVKDVDGRTA+DRA NEEIKDFILNFS KKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA

A0A1S3CJ75 protein LHCP TRANSLOCATION DEFECT8.1e-8393.45Show/hide
Query:  MASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCTTSINLTPRSFNSRPP KL S  LGLQS+LRW+SP+SIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA+YDVKDVDGRTAIDRA NEEIKDFIL FS KKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA

A0A5D3BT07 Protein LHCP TRANSLOCATION DEFECT8.1e-8393.45Show/hide
Query:  MASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCTTSINLTPRSFNSRPP KL S  LGLQS+LRW+SP+SIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA+YDVKDVDGRTAIDRA NEEIKDFIL FS KKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA

A0A6J1EVN2 protein LHCP TRANSLOCATION DEFECT4.4e-8192.26Show/hide
Query:  MASLSCT-TSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCT TSINL+P S NSRPPLKLGSQ LGLQS+LRWVSP++IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASLSCT-TSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDRAPN+EIKDFILNFSV+K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKK

A0A6J1JAV9 protein LHCP TRANSLOCATION DEFECT8.9e-8292.86Show/hide
Query:  MASLSCT-TSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCT TSINL+P SFNSRPPLKLGSQ LGLQS+LRWVSP++IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASLSCT-TSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDRAPN+EIKDFILNFSV+K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKK

SwissProt top hitse value%identityAlignment
A2YLX7 Protein LHCP TRANSLOCATION DEFECT1.2e-4660.47Show/hide
Query:  MASLSCTTSINLTPRSFNSRPPLKLGSQL---LGLQSSLRWVSPVSIGPSNGSRATCWFNL-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGT
        MAS+ CT  ++    S ++    +   +    LG     R  + V    S     TC+F    ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAVEGT
Subjt:  MASLSCTTSINLTPRSFNSRPPLKLGSQL---LGLQSSLRWVSPVSIGPSNGSRATCWFNL-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGT

Query:  YDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA
        YDKMEALL+QDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRA  ++ ++FIL F+   A
Subjt:  YDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA

A3BKF2 Protein LHCP TRANSLOCATION DEFECT1.2e-4660.47Show/hide
Query:  MASLSCTTSINLTPRSFNSRPPLKLGSQL---LGLQSSLRWVSPVSIGPSNGSRATCWFNL-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGT
        MAS+ CT  ++    S ++    +   +    LG     R  + V    S     TC+F    ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAVEGT
Subjt:  MASLSCTTSINLTPRSFNSRPPLKLGSQL---LGLQSSLRWVSPVSIGPSNGSRATCWFNL-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGT

Query:  YDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA
        YDKMEALL+QDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRA  ++ ++FIL F+   A
Subjt:  YDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA

Q8VY88 Protein LHCP TRANSLOCATION DEFECT5.2e-5565.09Show/hide
Query:  SLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        S SC  S+  +  S  S  P  L S+ LG ++    + P  +GPSNGSR TCWF   +N   AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY K
Subjt:  SLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA
        MEALL+ +IHPVDILLMLAA+EGD+PK+EELL+AGA+Y VKD DGRTAIDRA +EEI+D IL +S +KA
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA

Arabidopsis top hitse value%identityAlignment
AT1G50900.1 Ankyrin repeat family protein3.7e-5665.09Show/hide
Query:  SLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        S SC  S+  +  S  S  P  L S+ LG ++    + P  +GPSNGSR TCWF   +N   AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY K
Subjt:  SLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA
        MEALL+ +IHPVDILLMLAA+EGD+PK+EELL+AGA+Y VKD DGRTAIDRA +EEI+D IL +S +KA
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCCTCTCCTGTACTACTTCCATAAATCTCACCCCAAGATCCTTCAATTCTCGCCCCCCATTGAAATTGGGTTCCCAATTGCTTGGTCTTCAATCCAGCCTCCG
ATGGGTTTCACCCGTCTCCATTGGACCTTCCAATGGGTCTAGAGCAACGTGCTGGTTCAATTTAAGGCAAAATGCTGAAGGTGCAGGCATTTATGGCAGCCAGTCCCGAG
ATGACTTCAACAGAGACGATGTTGAGCAGTATTTTAACTACATGGGAATGCTGGCTGTAGAGGGTACATATGACAAAATGGAAGCTCTTTTGAGCCAAGACATTCACCCA
GTGGACATTTTGCTGATGCTGGCTGCCTCAGAAGGGGACAAACCAAAACTTGAGGAGCTATTGAGAGCTGGAGCTAATTATGATGTGAAAGATGTAGATGGTCGAACTGC
CATTGATAGAGCACCTAATGAAGAAATTAAGGATTTTATTCTTAATTTTTCTGTTAAAAAGGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCCTCTCCTGTACTACTTCCATAAATCTCACCCCAAGATCCTTCAATTCTCGCCCCCCATTGAAATTGGGTTCCCAATTGCTTGGTCTTCAATCCAGCCTCCG
ATGGGTTTCACCCGTCTCCATTGGACCTTCCAATGGGTCTAGAGCAACGTGCTGGTTCAATTTAAGGCAAAATGCTGAAGGTGCAGGCATTTATGGCAGCCAGTCCCGAG
ATGACTTCAACAGAGACGATGTTGAGCAGTATTTTAACTACATGGGAATGCTGGCTGTAGAGGGTACATATGACAAAATGGAAGCTCTTTTGAGCCAAGACATTCACCCA
GTGGACATTTTGCTGATGCTGGCTGCCTCAGAAGGGGACAAACCAAAACTTGAGGAGCTATTGAGAGCTGGAGCTAATTATGATGTGAAAGATGTAGATGGTCGAACTGC
CATTGATAGAGCACCTAATGAAGAAATTAAGGATTTTATTCTTAATTTTTCTGTTAAAAAGGCATGA
Protein sequenceShow/hide protein sequence
MASLSCTTSINLTPRSFNSRPPLKLGSQLLGLQSSLRWVSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHP
VDILLMLAASEGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNFSVKKA