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HG10011594 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10011594
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationChr01:7762396..7762803
RNA-Seq ExpressionHG10011594
SyntenyHG10011594
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051227.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]2.0e-0543.18Show/hide
Query:  YHSEAGPSSLSYVVH-------NESGSLHKHGRGRGENEHYLYPTEPV-----------EEQEEQDVPQRGRRQQPTRNRRRPSCGTH
        Y+SEAGPSS ++          + S  +H HGRGRGE+  YLY   P            +E +E+   QR + +QPTRNRRRP CGTH
Subjt:  YHSEAGPSSLSYVVH-------NESGSLHKHGRGRGENEHYLYPTEPV-----------EEQEEQDVPQRGRRQQPTRNRRRPSCGTH

KAA0062642.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]3.7e-0442.17Show/hide
Query:  YHSEAGPSSLSYVVHNESGSLHKHGRGRGENEHYLY---PTEPVEEQEEQDVPQ----------RGRRQQPTRNRRRPSCGTH
        Y +  GPSS    V   +  +H H RG GE+  YLY   P +  + QE Q  P+          + RR+QPTRNRRRP CGTH
Subjt:  YHSEAGPSSLSYVVHNESGSLHKHGRGRGENEHYLY---PTEPVEEQEEQDVPQ----------RGRRQQPTRNRRRPSCGTH

TYK18882.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa]2.0e-0539.6Show/hide
Query:  APAPRYRRRAQVEYHSEAGPSSLSYVVH-------NESGSLHKHGRGRGENEHYLYPTEPV-----------EEQEEQDVPQRGRRQQPTRNRRRPSCGT
        +P    R      Y+SEAGPSS ++          + S  +H HGRGRGE+  YLY   P            +E +E+   QR + +QPTRNRRRP CGT
Subjt:  APAPRYRRRAQVEYHSEAGPSSLSYVVH-------NESGSLHKHGRGRGENEHYLYPTEPV-----------EEQEEQDVPQRGRRQQPTRNRRRPSCGT

Query:  H
        H
Subjt:  H

TrEMBL top hitse value%identityAlignment
A0A5A7U9Y2 Mediator of RNA polymerase II transcription subunit 12-like isoform X19.6e-0643.18Show/hide
Query:  YHSEAGPSSLSYVVH-------NESGSLHKHGRGRGENEHYLYPTEPV-----------EEQEEQDVPQRGRRQQPTRNRRRPSCGTH
        Y+SEAGPSS ++          + S  +H HGRGRGE+  YLY   P            +E +E+   QR + +QPTRNRRRP CGTH
Subjt:  YHSEAGPSSLSYVVH-------NESGSLHKHGRGRGENEHYLYPTEPV-----------EEQEEQDVPQRGRRQQPTRNRRRPSCGTH

A0A5A7V342 Mediator of RNA polymerase II transcription subunit 12-like isoform X11.8e-0442.17Show/hide
Query:  YHSEAGPSSLSYVVHNESGSLHKHGRGRGENEHYLY---PTEPVEEQEEQDVPQ----------RGRRQQPTRNRRRPSCGTH
        Y +  GPSS    V   +  +H H RG GE+  YLY   P +  + QE Q  P+          + RR+QPTRNRRRP CGTH
Subjt:  YHSEAGPSSLSYVVHNESGSLHKHGRGRGENEHYLY---PTEPVEEQEEQDVPQ----------RGRRQQPTRNRRRPSCGTH

A0A5D3D5S4 GATA zinc finger domain-containing protein 10-like isoform X29.6e-0639.6Show/hide
Query:  APAPRYRRRAQVEYHSEAGPSSLSYVVH-------NESGSLHKHGRGRGENEHYLYPTEPV-----------EEQEEQDVPQRGRRQQPTRNRRRPSCGT
        +P    R      Y+SEAGPSS ++          + S  +H HGRGRGE+  YLY   P            +E +E+   QR + +QPTRNRRRP CGT
Subjt:  APAPRYRRRAQVEYHSEAGPSSLSYVVH-------NESGSLHKHGRGRGENEHYLYPTEPV-----------EEQEEQDVPQRGRRQQPTRNRRRPSCGT

Query:  H
        H
Subjt:  H

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGACATACTTATTGCACATGCACCTGCTCCTAGATATAGAAGACGCGCTCAAGTGGAATATCATAGTGAAGCTGGTCCTTCATCGTTATCATATGTTGTTCATAA
TGAGTCTGGTTCATTACATAAGCATGGCCGTGGACGTGGTGAGAATGAACATTATTTGTATCCTACAGAACCAGTAGAAGAACAAGAGGAACAAGATGTGCCACAAAGAG
GTCGTCGCCAACAACCAACTCGCAATCGACGACGTCCATCTTGTGGCACCCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATGACATACTTATTGCACATGCACCTGCTCCTAGATATAGAAGACGCGCTCAAGTGGAATATCATAGTGAAGCTGGTCCTTCATCGTTATCATATGTTGTTCATAA
TGAGTCTGGTTCATTACATAAGCATGGCCGTGGACGTGGTGAGAATGAACATTATTTGTATCCTACAGAACCAGTAGAAGAACAAGAGGAACAAGATGTGCCACAAAGAG
GTCGTCGCCAACAACCAACTCGCAATCGACGACGTCCATCTTGTGGCACCCATTGA
Protein sequenceShow/hide protein sequence
MYDILIAHAPAPRYRRRAQVEYHSEAGPSSLSYVVHNESGSLHKHGRGRGENEHYLYPTEPVEEQEEQDVPQRGRRQQPTRNRRRPSCGTH