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HG10011632 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10011632
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCCHC-type domain-containing protein
Genome locationChr01:8494213..8494695
RNA-Seq ExpressionHG10011632
SyntenyHG10011632
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR036875 - Zinc finger, CCHC-type superfamily
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OQU92454.1 hypothetical protein SORBI_3001G347001 [Sorghum bicolor]7.2e-1947.06Show/hide
Query:  LGEAMGDFLEVDCEQDNCCSGECLRIKIQLDISKPLRRGIWIEPGGDQGSIWIQEKYERLPNFCYGCGRIGHMMKECNVGSDWVDQDLEFSQFGSWLRFQ
        LG  +G  L VD E D    G  LRIK+++DI KPL RGI +E    +   W   +YE LPNFCYGCG +GH+ KEC+     V++++ F QFG WLR  
Subjt:  LGEAMGDFLEVDCEQDNCCSGECLRIKIQLDISKPLRRGIWIEPGGDQGSIWIQEKYERLPNFCYGCGRIGHMMKECNVGSDWVDQDLEFSQFGSWLRFQ

Query:  GT
         T
Subjt:  GT

XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]1.7e-2046.67Show/hide
Query:  MARRLGEAMGDFLEVDCEQDNCCSGECLRIKIQLDISKPLRRGIWIEPGGDQGSIWIQEKYERLPNFCYGCGRIGHMMKECNVGSDWVDQDLEFSQFGSW
        MA RLG A+G F +V+   +N C G CLR++++ D+ KPL RGI +   G  G  WI  +YERLP+F Y CGR+ H++K+C+     VD   +  Q+G W
Subjt:  MARRLGEAMGDFLEVDCEQDNCCSGECLRIKIQLDISKPLRRGIWIEPGGDQGSIWIQEKYERLPNFCYGCGRIGHMMKECNVGSDWVDQDLEFSQFGSW

Query:  LRFQG
        LRFQG
Subjt:  LRFQG

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]2.9e-2042.86Show/hide
Query:  MARRLGEAMGDFLEVDCEQDNCCSGECLRIKIQLDISKPLRRGIWIEPGGDQGSIWIQEKYERLPNFCYGCGRIGHMMKECNVGSDWVDQDLE-FSQFGS
        MA RLG A+G+F++VDC +     G  LRI++ +DI+KPLRRGI I   G  G  WI  +YERLP+FCY CG IGH   +C+        D    S++G 
Subjt:  MARRLGEAMGDFLEVDCEQDNCCSGECLRIKIQLDISKPLRRGIWIEPGGDQGSIWIQEKYERLPNFCYGCGRIGHMMKECNVGSDWVDQDLE-FSQFGS

Query:  WLRFQGTNL---RHRRKNSPSKDQKDDSPSESS
        WLRF G+     + R+  SP+++    S S +S
Subjt:  WLRFQGTNL---RHRRKNSPSKDQKDDSPSESS

XP_024642377.1 uncharacterized protein LOC112422874 [Medicago truncatula]3.6e-1838.55Show/hide
Query:  MARRLGEAMGDFLEVDCEQDNCCSGECLRIKIQLDISKPLRRGIWIEPGGDQGSIWIQEKYERLPNFCYGCGRIGHMMKECNV-----GSDWVDQDLEFS
        MAR+LG+ +G FLEVD ++D    G+ +RIK+ +D+  PL+RGI ++    + S+WI  KYERLPNFCY CGRIGH MKEC       G  + D + +  
Subjt:  MARRLGEAMGDFLEVDCEQDNCCSGECLRIKIQLDISKPLRRGIWIEPGGDQGSIWIQEKYERLPNFCYGCGRIGHMMKECNV-----GSDWVDQDLEFS

Query:  QFGSWLRFQG-TNLRHRRKNSPSKDQKDDSPSESSSFHPDPDIPKEDTRK--------TPIPVKSK
         +GSW+R       +   K  PS      S   S+S     +  +E T K        TP+  K K
Subjt:  QFGSWLRFQG-TNLRHRRKNSPSKDQKDDSPSESSSFHPDPDIPKEDTRK--------TPIPVKSK

XP_035547259.1 uncharacterized protein LOC118348856 [Juglans regia]8.0e-1841.09Show/hide
Query:  RRLGEAMGDFLEVDCEQDNCCSGECLRIKIQLDISKPLRRGIWIEPGGDQGSIWIQEKYERLPNFCYGCGRIGHMMKECNVGSDWVDQDLEFSQFGSWLR
        R +G  +G   EVD EQ     GE LRI+++++IS+PL RGI ++  G  GS+WI+  YERLPNFCY CG++GH  K+C +      +D +   FG WL 
Subjt:  RRLGEAMGDFLEVDCEQDNCCSGECLRIKIQLDISKPLRRGIWIEPGGDQGSIWIQEKYERLPNFCYGCGRIGHMMKECNVGSDWVDQDLEFSQFGSWLR

Query:  FQGTNLRHRRKNSPSKDQ--KDDSPSESS
          GT +   + NS  +    ++ SP+ SS
Subjt:  FQGTNLRHRRKNSPSKDQ--KDDSPSESS

TrEMBL top hitse value%identityAlignment
A0A1Z5S941 CCHC-type domain-containing protein3.5e-1947.06Show/hide
Query:  LGEAMGDFLEVDCEQDNCCSGECLRIKIQLDISKPLRRGIWIEPGGDQGSIWIQEKYERLPNFCYGCGRIGHMMKECNVGSDWVDQDLEFSQFGSWLRFQ
        LG  +G  L VD E D    G  LRIK+++DI KPL RGI +E    +   W   +YE LPNFCYGCG +GH+ KEC+     V++++ F QFG WLR  
Subjt:  LGEAMGDFLEVDCEQDNCCSGECLRIKIQLDISKPLRRGIWIEPGGDQGSIWIQEKYERLPNFCYGCGRIGHMMKECNVGSDWVDQDLEFSQFGSWLRFQ

Query:  GT
         T
Subjt:  GT

A0A6J1BSZ1 uncharacterized protein LOC1110054818.3e-2146.67Show/hide
Query:  MARRLGEAMGDFLEVDCEQDNCCSGECLRIKIQLDISKPLRRGIWIEPGGDQGSIWIQEKYERLPNFCYGCGRIGHMMKECNVGSDWVDQDLEFSQFGSW
        MA RLG A+G F +V+   +N C G CLR++++ D+ KPL RGI +   G  G  WI  +YERLP+F Y CGR+ H++K+C+     VD   +  Q+G W
Subjt:  MARRLGEAMGDFLEVDCEQDNCCSGECLRIKIQLDISKPLRRGIWIEPGGDQGSIWIQEKYERLPNFCYGCGRIGHMMKECNVGSDWVDQDLEFSQFGSW

Query:  LRFQG
        LRFQG
Subjt:  LRFQG

A0A6J1DU55 uncharacterized protein LOC1110231351.4e-2042.86Show/hide
Query:  MARRLGEAMGDFLEVDCEQDNCCSGECLRIKIQLDISKPLRRGIWIEPGGDQGSIWIQEKYERLPNFCYGCGRIGHMMKECNVGSDWVDQDLE-FSQFGS
        MA RLG A+G+F++VDC +     G  LRI++ +DI+KPLRRGI I   G  G  WI  +YERLP+FCY CG IGH   +C+        D    S++G 
Subjt:  MARRLGEAMGDFLEVDCEQDNCCSGECLRIKIQLDISKPLRRGIWIEPGGDQGSIWIQEKYERLPNFCYGCGRIGHMMKECNVGSDWVDQDLE-FSQFGS

Query:  WLRFQGTNL---RHRRKNSPSKDQKDDSPSESS
        WLRF G+     + R+  SP+++    S S +S
Subjt:  WLRFQGTNL---RHRRKNSPSKDQKDDSPSESS

A0A6P5RLJ8 uncharacterized protein LOC1107468645.6e-1740.91Show/hide
Query:  MARRLGEAMGDFLEVDCEQDNCCSGECLRIKIQLDISKPLRRGIWIEPGGDQGS--IWIQEKYERLPNFCYGCGRIGHMMKECNVGSDWVDQDLEFSQFG
        M   LG  MG  L V+C++   C G+ LR+++ LDIS PLRRG+ +      GS  +W+  +YERLP++C  CGR  H  +EC+     +  D + S FG
Subjt:  MARRLGEAMGDFLEVDCEQDNCCSGECLRIKIQLDISKPLRRGIWIEPGGDQGS--IWIQEKYERLPNFCYGCGRIGHMMKECNVGSDWVDQDLEFSQFG

Query:  SWLRFQGTNL
        SWLR +  +L
Subjt:  SWLRFQGTNL

A0A6P9EID8 uncharacterized protein LOC1183488563.9e-1841.09Show/hide
Query:  RRLGEAMGDFLEVDCEQDNCCSGECLRIKIQLDISKPLRRGIWIEPGGDQGSIWIQEKYERLPNFCYGCGRIGHMMKECNVGSDWVDQDLEFSQFGSWLR
        R +G  +G   EVD EQ     GE LRI+++++IS+PL RGI ++  G  GS+WI+  YERLPNFCY CG++GH  K+C +      +D +   FG WL 
Subjt:  RRLGEAMGDFLEVDCEQDNCCSGECLRIKIQLDISKPLRRGIWIEPGGDQGSIWIQEKYERLPNFCYGCGRIGHMMKECNVGSDWVDQDLEFSQFGSWLR

Query:  FQGTNLRHRRKNSPSKDQ--KDDSPSESS
          GT +   + NS  +    ++ SP+ SS
Subjt:  FQGTNLRHRRKNSPSKDQ--KDDSPSESS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACGCAGATTGGGAGAAGCAATGGGTGATTTTTTAGAAGTAGATTGTGAACAAGATAATTGTTGCTCGGGTGAATGTTTAAGAATTAAAATTCAACTAGATATTTC
TAAGCCTCTTAGAAGAGGTATCTGGATAGAGCCAGGAGGAGATCAAGGAAGTATATGGATTCAAGAAAAATATGAACGTTTACCTAACTTCTGTTATGGTTGTGGTAGAA
TAGGCCATATGATGAAAGAATGTAATGTGGGTTCAGATTGGGTTGATCAAGACTTAGAGTTTTCCCAATTTGGAAGTTGGCTTCGTTTCCAAGGAACTAATCTGAGACAT
AGAAGGAAGAATTCTCCTTCAAAAGATCAAAAAGATGATTCTCCTTCAGAGTCATCTTCTTTTCACCCTGATCCGGATATTCCAAAAGAAGATACCCGTAAAACACCTAT
ACCAGTTAAGTCAAAAGTAGCGATTTACCTCCTAAAATTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCACGCAGATTGGGAGAAGCAATGGGTGATTTTTTAGAAGTAGATTGTGAACAAGATAATTGTTGCTCGGGTGAATGTTTAAGAATTAAAATTCAACTAGATATTTC
TAAGCCTCTTAGAAGAGGTATCTGGATAGAGCCAGGAGGAGATCAAGGAAGTATATGGATTCAAGAAAAATATGAACGTTTACCTAACTTCTGTTATGGTTGTGGTAGAA
TAGGCCATATGATGAAAGAATGTAATGTGGGTTCAGATTGGGTTGATCAAGACTTAGAGTTTTCCCAATTTGGAAGTTGGCTTCGTTTCCAAGGAACTAATCTGAGACAT
AGAAGGAAGAATTCTCCTTCAAAAGATCAAAAAGATGATTCTCCTTCAGAGTCATCTTCTTTTCACCCTGATCCGGATATTCCAAAAGAAGATACCCGTAAAACACCTAT
ACCAGTTAAGTCAAAAGTAGCGATTTACCTCCTAAAATTATAA
Protein sequenceShow/hide protein sequence
MARRLGEAMGDFLEVDCEQDNCCSGECLRIKIQLDISKPLRRGIWIEPGGDQGSIWIQEKYERLPNFCYGCGRIGHMMKECNVGSDWVDQDLEFSQFGSWLRFQGTNLRH
RRKNSPSKDQKDDSPSESSSFHPDPDIPKEDTRKTPIPVKSKVAIYLLKL