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HG10011794 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10011794
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionProtein Ycf2-like
Genome locationChr01:12228331..12229497
RNA-Seq ExpressionHG10011794
SyntenyHG10011794
Gene Ontology termsNA
InterPro domainsIPR015410 - Domain of unknown function DUF1985


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037180.1 protein Ycf2-like [Cucumis melo var. makuwa]2.3e-2746.41Show/hide
Query:  MAKLYFLESFLIPKQDTLNLELEHILMVDDDDLFDNYPWGRVAFDLLVEFMNRA-----------LEICPLLATLEEMNMPYFSPFLEDEKRVMKEVEEE
        MAKLYFLESFLIPKQ+ L+++ +HI+MVDDD++FD YPWGRVAF+LLV+FMNRA           LE+ P+ AT +E+ +P+F PF+E EK ++KE E+E
Subjt:  MAKLYFLESFLIPKQDTLNLELEHILMVDDDDLFDNYPWGRVAFDLLVEFMNRA-----------LEICPLLATLEEMNMPYFSPFLEDEKRVMKEVEEE

Query:  LSKYMPKERVVELSLNKGLAYGNDAASEFEQQLDEIEKKQEEKEEEKEFVDHF
        L K    + +  +SLN+G+       +   + +++IEK Q+  E   E +  F
Subjt:  LSKYMPKERVVELSLNKGLAYGNDAASEFEQQLDEIEKKQEEKEEEKEFVDHF

KAA0040869.1 protein Ycf2-like [Cucumis melo var. makuwa]2.2e-2544.1Show/hide
Query:  MAKLYFLESFLIPKQDTLNLELEHILMVDDDDLFDNYPWGRVAFDLLVEFMNRA------------------------LEICPLLATLEEMNMPYFSPFL
        MAKLYFLESFLIPKQ+ LN++ +HI+MVDDD++FD YPWGRVAF+LLV+FMNRA                        LE+ P+LAT +E+ M +F+PF+
Subjt:  MAKLYFLESFLIPKQDTLNLELEHILMVDDDDLFDNYPWGRVAFDLLVEFMNRA------------------------LEICPLLATLEEMNMPYFSPFL

Query:  EDEKRVMKEVEEELSKYMPKERVVELSLNKGLAYGNDAASEFEQQLDEIEKKQEEKEEEKE
        E EK ++KE E+EL K    + +  +SLN+G+       +   + +++IE  Q+  E   E
Subjt:  EDEKRVMKEVEEELSKYMPKERVVELSLNKGLAYGNDAASEFEQQLDEIEKKQEEKEEEKE

TYK13893.1 protein Ycf2-like [Cucumis melo var. makuwa]2.3e-2746.41Show/hide
Query:  MAKLYFLESFLIPKQDTLNLELEHILMVDDDDLFDNYPWGRVAFDLLVEFMNRA-----------LEICPLLATLEEMNMPYFSPFLEDEKRVMKEVEEE
        MAKLYFLESFLIPKQ+ L+++ +HI+MVDDD++FD YPWGRVAF+LLV+FMNRA           LE+ P+ AT +E+ +P+F PF+E EK ++KE E+E
Subjt:  MAKLYFLESFLIPKQDTLNLELEHILMVDDDDLFDNYPWGRVAFDLLVEFMNRA-----------LEICPLLATLEEMNMPYFSPFLEDEKRVMKEVEEE

Query:  LSKYMPKERVVELSLNKGLAYGNDAASEFEQQLDEIEKKQEEKEEEKEFVDHF
        L K    + +  +SLN+G+       +   + +++IEK Q+  E   E +  F
Subjt:  LSKYMPKERVVELSLNKGLAYGNDAASEFEQQLDEIEKKQEEKEEEKEFVDHF

TYK23840.1 protein Ycf2-like [Cucumis melo var. makuwa]2.2e-2533.46Show/hide
Query:  MAKLYFLESFLIPKQDTLNLELEHILMVDDDDLFDNYPWGRVAFDLLVEFMNR-----------------------------------------------
        MAKLYFLESFLIPKQ+ L+++ +HI+MVDDD++FD YPWGRVAF+LLV+FMNR                                               
Subjt:  MAKLYFLESFLIPKQDTLNLELEHILMVDDDDLFDNYPWGRVAFDLLVEFMNR-----------------------------------------------

Query:  -----------------------ALEICPLLATLEEMNMPYFSPFLEDEKRVMKEVEEELSKYMPKERVVELSLNKGLAYGND-------AASEFEQQLD
                                LE+ P+LAT  E+ MP+F+PF+E EK ++KE E+EL K    + +  +SLN+G+   ++        A  FE+ LD
Subjt:  -----------------------ALEICPLLATLEEMNMPYFSPFLEDEKRVMKEVEEELSKYMPKERVVELSLNKGLAYGND-------AASEFEQQLD

Query:  EIEKKQEEKEEEKEFVDHFDPPTTIRRKDDDQDDDGQGKKNPQSIVTQAEHKEA-SKGNKSRAVVGKETKET
        ++E+ QEE + E   +D  +  T + ++DDD+D DG+G  +     +   H    SK  KS+       KE+
Subjt:  EIEKKQEEKEEEKEFVDHFDPPTTIRRKDDDQDDDGQGKKNPQSIVTQAEHKEA-SKGNKSRAVVGKETKET

TYK28841.1 protein Ycf2-like [Cucumis melo var. makuwa]4.9e-2541.57Show/hide
Query:  MAKLYFLESFLIPKQDTLNLELEHILMVDDDDLFDNYPWGRVAFDLLVEFMNRAL------------------------EICPLLATLEEMNMPYFSPFL
        MAKLYFLESFLIPKQ+ L++E +HI+MVDDD++FD YPWGRVAF+LLV+FMNRA+                        E+  +LAT  E+ MPYF+PF+
Subjt:  MAKLYFLESFLIPKQDTLNLELEHILMVDDDDLFDNYPWGRVAFDLLVEFMNRAL------------------------EICPLLATLEEMNMPYFSPFL

Query:  EDEKRVMKEVEEELSKYMPKERVVELSLNKGLAYGNDAASEFEQQLDEIEKKQEEKEEEKEFVDHF
        + EK +++E E+EL K    + +  +S+N+G+       +   + +++IE  Q+  E   E +  F
Subjt:  EDEKRVMKEVEEELSKYMPKERVVELSLNKGLAYGNDAASEFEQQLDEIEKKQEEKEEEKEFVDHF

TrEMBL top hitse value%identityAlignment
A0A5A7T1D9 Protein Ycf2-like1.1e-2746.41Show/hide
Query:  MAKLYFLESFLIPKQDTLNLELEHILMVDDDDLFDNYPWGRVAFDLLVEFMNRA-----------LEICPLLATLEEMNMPYFSPFLEDEKRVMKEVEEE
        MAKLYFLESFLIPKQ+ L+++ +HI+MVDDD++FD YPWGRVAF+LLV+FMNRA           LE+ P+ AT +E+ +P+F PF+E EK ++KE E+E
Subjt:  MAKLYFLESFLIPKQDTLNLELEHILMVDDDDLFDNYPWGRVAFDLLVEFMNRA-----------LEICPLLATLEEMNMPYFSPFLEDEKRVMKEVEEE

Query:  LSKYMPKERVVELSLNKGLAYGNDAASEFEQQLDEIEKKQEEKEEEKEFVDHF
        L K    + +  +SLN+G+       +   + +++IEK Q+  E   E +  F
Subjt:  LSKYMPKERVVELSLNKGLAYGNDAASEFEQQLDEIEKKQEEKEEEKEFVDHF

A0A5A7THT9 Protein Ycf2-like1.1e-2544.1Show/hide
Query:  MAKLYFLESFLIPKQDTLNLELEHILMVDDDDLFDNYPWGRVAFDLLVEFMNRA------------------------LEICPLLATLEEMNMPYFSPFL
        MAKLYFLESFLIPKQ+ LN++ +HI+MVDDD++FD YPWGRVAF+LLV+FMNRA                        LE+ P+LAT +E+ M +F+PF+
Subjt:  MAKLYFLESFLIPKQDTLNLELEHILMVDDDDLFDNYPWGRVAFDLLVEFMNRA------------------------LEICPLLATLEEMNMPYFSPFL

Query:  EDEKRVMKEVEEELSKYMPKERVVELSLNKGLAYGNDAASEFEQQLDEIEKKQEEKEEEKE
        E EK ++KE E+EL K    + +  +SLN+G+       +   + +++IE  Q+  E   E
Subjt:  EDEKRVMKEVEEELSKYMPKERVVELSLNKGLAYGNDAASEFEQQLDEIEKKQEEKEEEKE

A0A5D3CPV6 Protein Ycf2-like1.1e-2746.41Show/hide
Query:  MAKLYFLESFLIPKQDTLNLELEHILMVDDDDLFDNYPWGRVAFDLLVEFMNRA-----------LEICPLLATLEEMNMPYFSPFLEDEKRVMKEVEEE
        MAKLYFLESFLIPKQ+ L+++ +HI+MVDDD++FD YPWGRVAF+LLV+FMNRA           LE+ P+ AT +E+ +P+F PF+E EK ++KE E+E
Subjt:  MAKLYFLESFLIPKQDTLNLELEHILMVDDDDLFDNYPWGRVAFDLLVEFMNRA-----------LEICPLLATLEEMNMPYFSPFLEDEKRVMKEVEEE

Query:  LSKYMPKERVVELSLNKGLAYGNDAASEFEQQLDEIEKKQEEKEEEKEFVDHF
        L K    + +  +SLN+G+       +   + +++IEK Q+  E   E +  F
Subjt:  LSKYMPKERVVELSLNKGLAYGNDAASEFEQQLDEIEKKQEEKEEEKEFVDHF

A0A5D3DKA6 Protein Ycf2-like1.1e-2533.46Show/hide
Query:  MAKLYFLESFLIPKQDTLNLELEHILMVDDDDLFDNYPWGRVAFDLLVEFMNR-----------------------------------------------
        MAKLYFLESFLIPKQ+ L+++ +HI+MVDDD++FD YPWGRVAF+LLV+FMNR                                               
Subjt:  MAKLYFLESFLIPKQDTLNLELEHILMVDDDDLFDNYPWGRVAFDLLVEFMNR-----------------------------------------------

Query:  -----------------------ALEICPLLATLEEMNMPYFSPFLEDEKRVMKEVEEELSKYMPKERVVELSLNKGLAYGND-------AASEFEQQLD
                                LE+ P+LAT  E+ MP+F+PF+E EK ++KE E+EL K    + +  +SLN+G+   ++        A  FE+ LD
Subjt:  -----------------------ALEICPLLATLEEMNMPYFSPFLEDEKRVMKEVEEELSKYMPKERVVELSLNKGLAYGND-------AASEFEQQLD

Query:  EIEKKQEEKEEEKEFVDHFDPPTTIRRKDDDQDDDGQGKKNPQSIVTQAEHKEA-SKGNKSRAVVGKETKET
        ++E+ QEE + E   +D  +  T + ++DDD+D DG+G  +     +   H    SK  KS+       KE+
Subjt:  EIEKKQEEKEEEKEFVDHFDPPTTIRRKDDDQDDDGQGKKNPQSIVTQAEHKEA-SKGNKSRAVVGKETKET

A0A5D3DZ94 Protein Ycf2-like2.4e-2541.57Show/hide
Query:  MAKLYFLESFLIPKQDTLNLELEHILMVDDDDLFDNYPWGRVAFDLLVEFMNRAL------------------------EICPLLATLEEMNMPYFSPFL
        MAKLYFLESFLIPKQ+ L++E +HI+MVDDD++FD YPWGRVAF+LLV+FMNRA+                        E+  +LAT  E+ MPYF+PF+
Subjt:  MAKLYFLESFLIPKQDTLNLELEHILMVDDDDLFDNYPWGRVAFDLLVEFMNRAL------------------------EICPLLATLEEMNMPYFSPFL

Query:  EDEKRVMKEVEEELSKYMPKERVVELSLNKGLAYGNDAASEFEQQLDEIEKKQEEKEEEKEFVDHF
        + EK +++E E+EL K    + +  +S+N+G+       +   + +++IE  Q+  E   E +  F
Subjt:  EDEKRVMKEVEEELSKYMPKERVVELSLNKGLAYGNDAASEFEQQLDEIEKKQEEKEEEKEFVDHF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAAATTGTATTTTCTTGAGAGTTTTCTTATCCCAAAACAAGATACCCTGAATTTGGAATTGGAGCATATACTAATGGTGGATGATGATGATTTGTTTGACAACTA
TCCATGGGGAAGGGTTGCTTTCGATCTTCTAGTTGAATTCATGAATAGAGCACTTGAAATATGCCCTTTGCTAGCAACCCTAGAAGAAATGAATATGCCATATTTTTCCC
CGTTCCTTGAGGATGAAAAAAGAGTGATGAAAGAGGTTGAAGAAGAATTGAGCAAGTATATGCCAAAAGAAAGAGTGGTTGAGCTTTCATTGAATAAAGGACTCGCTTAT
GGGAATGATGCAGCATCTGAATTCGAACAACAACTTGATGAAATCGAGAAAAAACAGGAAGAAAAGGAAGAAGAAAAAGAGTTTGTTGATCATTTTGATCCTCCAACAAC
AATTCGAAGAAAAGATGATGACCAAGATGATGATGGACAAGGAAAGAAGAACCCACAATCCATAGTAACACAGGCTGAACACAAGGAAGCAAGTAAAGGAAACAAGAGCA
GGGCGGTAGTGGGAAAAGAAACTAAGGAAACAGATGCAAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAAATTGTATTTTCTTGAGAGTTTTCTTATCCCAAAACAAGATACCCTGAATTTGGAATTGGAGCATATACTAATGGTGGATGATGATGATTTGTTTGACAACTA
TCCATGGGGAAGGGTTGCTTTCGATCTTCTAGTTGAATTCATGAATAGAGCACTTGAAATATGCCCTTTGCTAGCAACCCTAGAAGAAATGAATATGCCATATTTTTCCC
CGTTCCTTGAGGATGAAAAAAGAGTGATGAAAGAGGTTGAAGAAGAATTGAGCAAGTATATGCCAAAAGAAAGAGTGGTTGAGCTTTCATTGAATAAAGGACTCGCTTAT
GGGAATGATGCAGCATCTGAATTCGAACAACAACTTGATGAAATCGAGAAAAAACAGGAAGAAAAGGAAGAAGAAAAAGAGTTTGTTGATCATTTTGATCCTCCAACAAC
AATTCGAAGAAAAGATGATGACCAAGATGATGATGGACAAGGAAAGAAGAACCCACAATCCATAGTAACACAGGCTGAACACAAGGAAGCAAGTAAAGGAAACAAGAGCA
GGGCGGTAGTGGGAAAAGAAACTAAGGAAACAGATGCAAGGTAA
Protein sequenceShow/hide protein sequence
MAKLYFLESFLIPKQDTLNLELEHILMVDDDDLFDNYPWGRVAFDLLVEFMNRALEICPLLATLEEMNMPYFSPFLEDEKRVMKEVEEELSKYMPKERVVELSLNKGLAY
GNDAASEFEQQLDEIEKKQEEKEEEKEFVDHFDPPTTIRRKDDDQDDDGQGKKNPQSIVTQAEHKEASKGNKSRAVVGKETKETDAR