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HG10011800 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10011800
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRibonuclease H
Genome locationChr01:12382417..12382698
RNA-Seq ExpressionHG10011800
SyntenyHG10011800
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PNY03092.1 ribonuclease H [Trifolium pratense]6.5e-0436.14Show/hide
Query:  LEGDALALLFGLKLVQRMDISLVHVEIDSKALVNFIKKDTVKFSSLGVVLCEIKNHMLNIQMKSFSHIPRLCNNVAHELSRWA
        ++G+A  +   L LV+ + IS V +E DS++ VN +KK T    + G V+    + +      S S + RL N VAHEL++WA
Subjt:  LEGDALALLFGLKLVQRMDISLVHVEIDSKALVNFIKKDTVKFSSLGVVLCEIKNHMLNIQMKSFSHIPRLCNNVAHELSRWA
XP_015382216.1 uncharacterized protein LOC107175320 [Citrus sinensis]8.5e-0432.56Show/hide
Query:  VAALEGDALALLFGLKLVQRMDISLVHVEIDSKALVNFIKKDTVKFSSLGVVLCEIKNHMLNIQMKSFSHIPRLCNNVAHELSRWA
        VA +E +  A+LFGL+  Q+  +S + +E DSK +V+   K  +  + +   + EI+ ++ N  + S S++PR CN++AH +++ A
Subjt:  VAALEGDALALLFGLKLVQRMDISLVHVEIDSKALVNFIKKDTVKFSSLGVVLCEIKNHMLNIQMKSFSHIPRLCNNVAHELSRWA
TrEMBL top hitse value%identityAlignment
A0A2K3NJ66 Ribonuclease H3.2e-0436.14Show/hide
Query:  LEGDALALLFGLKLVQRMDISLVHVEIDSKALVNFIKKDTVKFSSLGVVLCEIKNHMLNIQMKSFSHIPRLCNNVAHELSRWA
        ++G+A  +   L LV+ + IS V +E DS++ VN +KK T    + G V+    + +      S S + RL N VAHEL++WA
Subjt:  LEGDALALLFGLKLVQRMDISLVHVEIDSKALVNFIKKDTVKFSSLGVVLCEIKNHMLNIQMKSFSHIPRLCNNVAHELSRWA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTGCATCTCGAGCAGAGTTGCAGCACTGGAGGGGGATGCTCTTGCTCTCCTCTTTGGGTTGAAGCTTGTCCAACGGATGGACATCTCTCTTGTTCACGTGGAGAT
TGACTCCAAGGCTTTGGTTAATTTCATCAAGAAGGATACTGTAAAATTCTCTTCATTGGGGGTTGTTTTGTGTGAAATTAAGAATCATATGTTAAATATCCAGATGAAGA
GTTTTTCTCATATCCCTAGATTATGTAACAATGTTGCTCATGAATTATCTAGGTGGGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTGCATCTCGAGCAGAGTTGCAGCACTGGAGGGGGATGCTCTTGCTCTCCTCTTTGGGTTGAAGCTTGTCCAACGGATGGACATCTCTCTTGTTCACGTGGAGAT
TGACTCCAAGGCTTTGGTTAATTTCATCAAGAAGGATACTGTAAAATTCTCTTCATTGGGGGTTGTTTTGTGTGAAATTAAGAATCATATGTTAAATATCCAGATGAAGA
GTTTTTCTCATATCCCTAGATTATGTAACAATGTTGCTCATGAATTATCTAGGTGGGCATGA
Protein sequenceShow/hide protein sequence
MDCISSRVAALEGDALALLFGLKLVQRMDISLVHVEIDSKALVNFIKKDTVKFSSLGVVLCEIKNHMLNIQMKSFSHIPRLCNNVAHELSRWA