; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10011821 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10011821
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPectin lyase-like superfamily protein
Genome locationChr01:12972607..12973077
RNA-Seq ExpressionHG10011821
SyntenyHG10011821
Gene Ontology termsGO:0006004 - fucose metabolic process (biological process)
GO:0006820 - anion transport (biological process)
GO:0055085 - transmembrane transport (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0004650 - polygalacturonase activity (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold
IPR024535 - Pectate lyase superfamily protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056019.1 polygalacturonase-like precursor [Cucumis melo var. makuwa]2.1e-4772.99Show/hide
Query:  MVVVFVISLGLLFMNHAL--AVGGLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFH
        M+VV +I L LL   HAL  A GGLTFDIV+LGAKPDGKTDASHAL  AWA AC+S +A+TVYVPKG FYVQS NF GPCN N ITFLI+G  +ASS+F 
Subjt:  MVVVFVISLGLLFMNHAL--AVGGLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFH

Query:  VLAKSRSWISFTYLNRLSIYGGVLDGQGTALWACKNS
        VLAKSR+WISF+ +N LSIYGG+LDGQGT LWACKNS
Subjt:  VLAKSRSWISFTYLNRLSIYGGVLDGQGTALWACKNS

KGN66851.2 hypothetical protein Csa_007016 [Cucumis sativus]8.6e-4975.91Show/hide
Query:  MVVVFVISLGLLFMNHAL--AVGGLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFH
        M VV +I L LL  +HAL  A GGLTFDIV+LGAKPD KTDASHAL  AWA ACAS +A+TVYVPKG FYVQS NF GPCNNN ITFLIDG  +ASSDF 
Subjt:  MVVVFVISLGLLFMNHAL--AVGGLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFH

Query:  VLAKSRSWISFTYLNRLSIYGGVLDGQGTALWACKNS
        VLAKSR+WISF+++N LSIYGGVLDGQGT LWACKNS
Subjt:  VLAKSRSWISFTYLNRLSIYGGVLDGQGTALWACKNS

NP_001315381.1 polygalacturonase-like precursor [Cucumis melo]2.1e-4772.99Show/hide
Query:  MVVVFVISLGLLFMNHAL--AVGGLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFH
        M+VV +I L LL   HAL  A GGLTFDIV+LGAKPDGKTDASHAL  AWA AC+S +A+TVYVPKG FYVQS NF GPCN N ITFLI+G  +ASS+F 
Subjt:  MVVVFVISLGLLFMNHAL--AVGGLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFH

Query:  VLAKSRSWISFTYLNRLSIYGGVLDGQGTALWACKNS
        VLAKSR+WISF+ +N LSIYGG+LDGQGT LWACKNS
Subjt:  VLAKSRSWISFTYLNRLSIYGGVLDGQGTALWACKNS

XP_004139061.1 polygalacturonase [Cucumis sativus]8.6e-4975.91Show/hide
Query:  MVVVFVISLGLLFMNHAL--AVGGLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFH
        M VV +I L LL  +HAL  A GGLTFDIV+LGAKPD KTDASHAL  AWA ACAS +A+TVYVPKG FYVQS NF GPCNNN ITFLIDG  +ASSDF 
Subjt:  MVVVFVISLGLLFMNHAL--AVGGLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFH

Query:  VLAKSRSWISFTYLNRLSIYGGVLDGQGTALWACKNS
        VLAKSR+WISF+++N LSIYGGVLDGQGT LWACKNS
Subjt:  VLAKSRSWISFTYLNRLSIYGGVLDGQGTALWACKNS

XP_008450348.2 PREDICTED: polygalacturonase-like [Cucumis melo]2.1e-4772.99Show/hide
Query:  MVVVFVISLGLLFMNHAL--AVGGLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFH
        M+VV +I L LL   HAL  A GGLTFDIV+LGAKPDGKTDASHAL  AWA AC+S +A+TVYVPKG FYVQS NF GPCN N ITFLI+G  +ASS+F 
Subjt:  MVVVFVISLGLLFMNHAL--AVGGLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFH

Query:  VLAKSRSWISFTYLNRLSIYGGVLDGQGTALWACKNS
        VLAKSR+WISF+ +N LSIYGG+LDGQGT LWACKNS
Subjt:  VLAKSRSWISFTYLNRLSIYGGVLDGQGTALWACKNS

TrEMBL top hitse value%identityAlignment
A0A0A0LXR8 Uncharacterized protein4.1e-4975.91Show/hide
Query:  MVVVFVISLGLLFMNHAL--AVGGLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFH
        M VV +I L LL  +HAL  A GGLTFDIV+LGAKPD KTDASHAL  AWA ACAS +A+TVYVPKG FYVQS NF GPCNNN ITFLIDG  +ASSDF 
Subjt:  MVVVFVISLGLLFMNHAL--AVGGLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFH

Query:  VLAKSRSWISFTYLNRLSIYGGVLDGQGTALWACKNS
        VLAKSR+WISF+++N LSIYGGVLDGQGT LWACKNS
Subjt:  VLAKSRSWISFTYLNRLSIYGGVLDGQGTALWACKNS

A0A1S3BPQ0 polygalacturonase-like1.0e-4772.99Show/hide
Query:  MVVVFVISLGLLFMNHAL--AVGGLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFH
        M+VV +I L LL   HAL  A GGLTFDIV+LGAKPDGKTDASHAL  AWA AC+S +A+TVYVPKG FYVQS NF GPCN N ITFLI+G  +ASS+F 
Subjt:  MVVVFVISLGLLFMNHAL--AVGGLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFH

Query:  VLAKSRSWISFTYLNRLSIYGGVLDGQGTALWACKNS
        VLAKSR+WISF+ +N LSIYGG+LDGQGT LWACKNS
Subjt:  VLAKSRSWISFTYLNRLSIYGGVLDGQGTALWACKNS

A0A5A7UR99 Polygalacturonase-like1.0e-4772.99Show/hide
Query:  MVVVFVISLGLLFMNHAL--AVGGLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFH
        M+VV +I L LL   HAL  A GGLTFDIV+LGAKPDGKTDASHAL  AWA AC+S +A+TVYVPKG FYVQS NF GPCN N ITFLI+G  +ASS+F 
Subjt:  MVVVFVISLGLLFMNHAL--AVGGLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFH

Query:  VLAKSRSWISFTYLNRLSIYGGVLDGQGTALWACKNS
        VLAKSR+WISF+ +N LSIYGG+LDGQGT LWACKNS
Subjt:  VLAKSRSWISFTYLNRLSIYGGVLDGQGTALWACKNS

A0A5D3DVD9 Polygalacturonase1.3e-4772.99Show/hide
Query:  MVVVFVISLGLLFMNHAL--AVGGLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFH
        M+VV +I L LL   HAL  A GGLTFDIV+LGAKPDGKTDASHAL  AWA AC+S +A+TVYVPKG FYVQS NF GPCN N ITFLI+G  +ASS+F 
Subjt:  MVVVFVISLGLLFMNHAL--AVGGLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFH

Query:  VLAKSRSWISFTYLNRLSIYGGVLDGQGTALWACKNS
        VLAKSR+WISF+ +N LSIYGG+LDGQGT LWACKNS
Subjt:  VLAKSRSWISFTYLNRLSIYGGVLDGQGTALWACKNS

A4UQV4 Polygalacturonase1.0e-4772.99Show/hide
Query:  MVVVFVISLGLLFMNHAL--AVGGLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFH
        M+VV +I L LL   HAL  A GGLTFDIV+LGAKPDGKTDASHAL  AWA AC+S +A+TVYVPKG FYVQS NF GPCN N ITFLI+G  +ASS+F 
Subjt:  MVVVFVISLGLLFMNHAL--AVGGLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFH

Query:  VLAKSRSWISFTYLNRLSIYGGVLDGQGTALWACKNS
        VLAKSR+WISF+ +N LSIYGG+LDGQGT LWACKNS
Subjt:  VLAKSRSWISFTYLNRLSIYGGVLDGQGTALWACKNS

SwissProt top hitse value%identityAlignment
O22818 Probable polygalacturonase At2g438608.4e-2346.9Show/hide
Query:  TFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNG-PCNNNDITFLIDGMFMASSDFHVLAKSRSWISFTYLNRLSIYGGVL
        T +++S GAKPDG  D++ A   AW  ACASA   T+ VPKG F V +  F+G  C    I+  I G  +A  DF ++A S+ WI F  +  +SIYGG+L
Subjt:  TFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNG-PCNNNDITFLIDGMFMASSDFHVLAKSRSWISFTYLNRLSIYGGVL

Query:  DGQGTALWACKNS
        D QGT+LW CKN+
Subjt:  DGQGTALWACKNS

P26216 Exopolygalacturonase2.8e-1843.48Show/hide
Query:  GLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFHVLAKSRSWISFTYLNRLSIYG-G
        G +FDI  LGA  +GKTD++ A+  AWA AC      T+ +PKG F V   NF GPC   D+T  +DG  +A++D        +WI    ++ L I G G
Subjt:  GLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFHVLAKSRSWISFTYLNRLSIYG-G

Query:  VLDGQGTALWACKNS
         LDGQG A+W+ KNS
Subjt:  VLDGQGTALWACKNS

P35338 Exopolygalacturonase1.6e-1843.48Show/hide
Query:  GLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFHVLAKSRSWISFTYLNRLSIYG-G
        G +FDI  LGA  +GKTD++ A+  AWA AC      T+ +PKG F V   NF GPC   D+T  +DG  +A++D     +  +WI    ++ L I G G
Subjt:  GLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFHVLAKSRSWISFTYLNRLSIYG-G

Query:  VLDGQGTALWACKNS
         LDGQG A+W+ KNS
Subjt:  VLDGQGTALWACKNS

P35339 Exopolygalacturonase4.8e-1843.09Show/hide
Query:  NHALAVG-GLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFHVLAKSRSWISFTYLN
        N A A G G +FDI  LGA  +GKTD++ A+  AWA AC      T+ +PKG F V   NF GPC   D+T  ++G  +A++D        +WI    ++
Subjt:  NHALAVG-GLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFHVLAKSRSWISFTYLN

Query:  RLSIYG-GVLDGQGTALWACKNS
         L I G G LDGQG A+W+ KNS
Subjt:  RLSIYG-GVLDGQGTALWACKNS

P48979 Polygalacturonase1.3e-3150Show/hide
Query:  VFVISLGLLFMNHALAVGGLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFHVLAKS
        +F +SL  +FM ++     LT+++ SLGAK DGKTD++ A   AWA ACAS     +YVP GTF+++   F+GPC NN ITF I G  +A SD+ V+  +
Subjt:  VFVISLGLLFMNHALAVGGLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFHVLAKS

Query:  RSWISFTYLNRLSIYGGVLDGQGTALWACK
         +WI F ++N ++I GG+LDGQGTALWACK
Subjt:  RSWISFTYLNRLSIYGGVLDGQGTALWACK

Arabidopsis top hitse value%identityAlignment
AT1G05650.1 Pectin lyase-like superfamily protein5.9e-2440.6Show/hide
Query:  VVFVISLGLLFMNHALAVGGLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFHVLAK
        + F +   LL      +   + F++VS GAKPDG TD++ A   AW  AC SA +ATV VP GTF ++   F GPC +  ITF + G  +A  D+     
Subjt:  VVFVISLGLLFMNHALAVGGLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFHVLAK

Query:  SRSWISFTYLNRLSIYGGVLDGQGTALWACKNS
        S SWI F  +NR S+ GG  D +G+  W+C+ S
Subjt:  SRSWISFTYLNRLSIYGGVLDGQGTALWACKNS

AT2G43860.1 Pectin lyase-like superfamily protein5.9e-2446.9Show/hide
Query:  TFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNG-PCNNNDITFLIDGMFMASSDFHVLAKSRSWISFTYLNRLSIYGGVL
        T +++S GAKPDG  D++ A   AW  ACASA   T+ VPKG F V +  F+G  C    I+  I G  +A  DF ++A S+ WI F  +  +SIYGG+L
Subjt:  TFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNG-PCNNNDITFLIDGMFMASSDFHVLAKSRSWISFTYLNRLSIYGGVL

Query:  DGQGTALWACKNS
        D QGT+LW CKN+
Subjt:  DGQGTALWACKNS

AT2G43870.1 Pectin lyase-like superfamily protein8.3e-2645.13Show/hide
Query:  TFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNG-PCNNNDITFLIDGMFMASSDFHVLAKSRSWISFTYLNRLSIYGGVL
        +++++S GAKPDGKTDA+ A    W  ACAS+   T+ VPKG F ++S  F+G  C    +TF IDG  +A +D+ V+     WI F +L+ +++YGGVL
Subjt:  TFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNG-PCNNNDITFLIDGMFMASSDFHVLAKSRSWISFTYLNRLSIYGGVL

Query:  DGQGTALWACKNS
        D +G +LW CK S
Subjt:  DGQGTALWACKNS

AT2G43890.1 Pectin lyase-like superfamily protein2.7e-2442.96Show/hide
Query:  MVVVFVISLGLLFMNHALAVGGLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFHVL
        + V+ +     L M  + A     +++VS GAKPDG+TD++ A   AW  AC SA A TV VP+G+F ++   F GPC +  ITF I G  +A SD+  L
Subjt:  MVVVFVISLGLLFMNHALAVGGLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFHVL

Query:  AKSRSWISFTYLNRLSIYGGVLDGQGTALWACKNS
          S  WI F  +NR+SI GG LD +G + WAC+ S
Subjt:  AKSRSWISFTYLNRLSIYGGVLDGQGTALWACKNS

AT3G59850.1 Pectin lyase-like superfamily protein8.0e-2946.83Show/hide
Query:  LLFMNHALAVGGLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNG-PCNNNDITFLIDGMFMASSDFHVLAKSRSWISF
        LLF+    +    T++I+S GAKPDGKTD++ A  + WA ACAS    T+ VPKG F ++S  F+G  C    +TF I G  +A SD+ V+ K   WI F
Subjt:  LLFMNHALAVGGLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNG-PCNNNDITFLIDGMFMASSDFHVLAKSRSWISF

Query:  TYLNRLSIYGGVLDGQGTALWACKNS
         +L+ +S+YGGVLD QG +LW+CK S
Subjt:  TYLNRLSIYGGVLDGQGTALWACKNS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTTGTTTTTGTAATTTCCCTTGGGCTTTTGTTTATGAACCACGCCTTGGCTGTTGGTGGATTGACGTTTGATATCGTCAGTCTTGGAGCCAAGCCGGATGGCAA
GACCGATGCCTCACATGCCTTGCATATTGCATGGGCTCATGCATGTGCCTCGGCTATGGCGGCCACCGTTTACGTGCCTAAGGGAACATTCTACGTTCAAAGTGCCAACT
TTAATGGACCTTGTAACAACAATGATATCACTTTTCTCATCGATGGCATGTTCATGGCTTCCTCAGACTTTCATGTTTTGGCCAAATCAAGATCATGGATTTCTTTCACA
TATCTAAATAGGCTTTCCATTTATGGTGGTGTTCTTGATGGCCAAGGAACTGCCTTGTGGGCTTGCAAAAACTCAAGTAGTTGGGTTTTAGGTTATTTTGGCCAATTGTT
CCATATAATATTAATTAGTGTTACTAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGTTGTTTTTGTAATTTCCCTTGGGCTTTTGTTTATGAACCACGCCTTGGCTGTTGGTGGATTGACGTTTGATATCGTCAGTCTTGGAGCCAAGCCGGATGGCAA
GACCGATGCCTCACATGCCTTGCATATTGCATGGGCTCATGCATGTGCCTCGGCTATGGCGGCCACCGTTTACGTGCCTAAGGGAACATTCTACGTTCAAAGTGCCAACT
TTAATGGACCTTGTAACAACAATGATATCACTTTTCTCATCGATGGCATGTTCATGGCTTCCTCAGACTTTCATGTTTTGGCCAAATCAAGATCATGGATTTCTTTCACA
TATCTAAATAGGCTTTCCATTTATGGTGGTGTTCTTGATGGCCAAGGAACTGCCTTGTGGGCTTGCAAAAACTCAAGTAGTTGGGTTTTAGGTTATTTTGGCCAATTGTT
CCATATAATATTAATTAGTGTTACTAAATAA
Protein sequenceShow/hide protein sequence
MVVVFVISLGLLFMNHALAVGGLTFDIVSLGAKPDGKTDASHALHIAWAHACASAMAATVYVPKGTFYVQSANFNGPCNNNDITFLIDGMFMASSDFHVLAKSRSWISFT
YLNRLSIYGGVLDGQGTALWACKNSSSWVLGYFGQLFHIILISVTK