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HG10011832 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10011832
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationChr01:13443686..13443877
RNA-Seq ExpressionHG10011832
SyntenyHG10011832
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046851.1 uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa]6.4e-1155.56Show/hide
Query:  MYMCVTKLLANRLVVWLICFVSLHQSAFVQGKSMVNNFLVYQELVGDYHLNTRKACCELKVDL
        +Y C++K+LA+RL +WL  F+S +QSAF+ G+S++ N L+ QELVG YHLN+ K  C LKVDL
Subjt:  MYMCVTKLLANRLVVWLICFVSLHQSAFVQGKSMVNNFLVYQELVGDYHLNTRKACCELKVDL

KAA0057642.1 reverse transcriptase [Cucumis melo var. makuwa]3.7e-1157.14Show/hide
Query:  MYMCVTKLLANRLVVWLICFVSLHQSAFVQGKSMVNNFLVYQELVGDYHLNTRKACCELKVDL
        +Y C++K+LA+RL VWL  F+S +QSAF+ G+S++ N L+ QELVG YHLN+ K  C LKVDL
Subjt:  MYMCVTKLLANRLVVWLICFVSLHQSAFVQGKSMVNNFLVYQELVGDYHLNTRKACCELKVDL

KAA0059752.1 F17F8.5 [Cucumis melo var. makuwa]6.4e-1158.06Show/hide
Query:  MYMCVTKLLANRLVVWLICFVSLHQSAFVQGKSMVNNFLVYQELVGDYHLNTRKACCELKVD
        +Y C++K+LA+RL VWL  F+S +QSAFV G+S++ N L+ QELVG YHLN+ K  C LKVD
Subjt:  MYMCVTKLLANRLVVWLICFVSLHQSAFVQGKSMVNNFLVYQELVGDYHLNTRKACCELKVD

TYK19523.1 reverse transcriptase [Cucumis melo var. makuwa]3.7e-1157.14Show/hide
Query:  MYMCVTKLLANRLVVWLICFVSLHQSAFVQGKSMVNNFLVYQELVGDYHLNTRKACCELKVDL
        +Y C++K+LA+RL VWL  F+S +QSAF+ G+S++ N L+ QELVG YHLN+ K  C LKVDL
Subjt:  MYMCVTKLLANRLVVWLICFVSLHQSAFVQGKSMVNNFLVYQELVGDYHLNTRKACCELKVDL

XP_008452126.1 PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo]3.7e-1157.14Show/hide
Query:  MYMCVTKLLANRLVVWLICFVSLHQSAFVQGKSMVNNFLVYQELVGDYHLNTRKACCELKVDL
        +Y C++K+LA+RL VWL  F+S +QSAF+ G+S++ N L+ QELVG YHLN+ K  C LKVDL
Subjt:  MYMCVTKLLANRLVVWLICFVSLHQSAFVQGKSMVNNFLVYQELVGDYHLNTRKACCELKVDL

TrEMBL top hitse value%identityAlignment
A0A1S3BSI8 uncharacterized protein LOC1034932251.8e-1157.14Show/hide
Query:  MYMCVTKLLANRLVVWLICFVSLHQSAFVQGKSMVNNFLVYQELVGDYHLNTRKACCELKVDL
        +Y C++K+LA+RL VWL  F+S +QSAF+ G+S++ N L+ QELVG YHLN+ K  C LKVDL
Subjt:  MYMCVTKLLANRLVVWLICFVSLHQSAFVQGKSMVNNFLVYQELVGDYHLNTRKACCELKVDL

A0A5A7TZS0 Reverse transcriptase domain-containing protein3.1e-1155.56Show/hide
Query:  MYMCVTKLLANRLVVWLICFVSLHQSAFVQGKSMVNNFLVYQELVGDYHLNTRKACCELKVDL
        +Y C++K+LA+RL +WL  F+S +QSAF+ G+S++ N L+ QELVG YHLN+ K  C LKVDL
Subjt:  MYMCVTKLLANRLVVWLICFVSLHQSAFVQGKSMVNNFLVYQELVGDYHLNTRKACCELKVDL

A0A5A7UP65 Reverse transcriptase1.8e-1157.14Show/hide
Query:  MYMCVTKLLANRLVVWLICFVSLHQSAFVQGKSMVNNFLVYQELVGDYHLNTRKACCELKVDL
        +Y C++K+LA+RL VWL  F+S +QSAF+ G+S++ N L+ QELVG YHLN+ K  C LKVDL
Subjt:  MYMCVTKLLANRLVVWLICFVSLHQSAFVQGKSMVNNFLVYQELVGDYHLNTRKACCELKVDL

A0A5A7UV01 F17F8.53.1e-1158.06Show/hide
Query:  MYMCVTKLLANRLVVWLICFVSLHQSAFVQGKSMVNNFLVYQELVGDYHLNTRKACCELKVD
        +Y C++K+LA+RL VWL  F+S +QSAFV G+S++ N L+ QELVG YHLN+ K  C LKVD
Subjt:  MYMCVTKLLANRLVVWLICFVSLHQSAFVQGKSMVNNFLVYQELVGDYHLNTRKACCELKVD

A0A5D3D7P6 Reverse transcriptase1.8e-1157.14Show/hide
Query:  MYMCVTKLLANRLVVWLICFVSLHQSAFVQGKSMVNNFLVYQELVGDYHLNTRKACCELKVDL
        +Y C++K+LA+RL VWL  F+S +QSAF+ G+S++ N L+ QELVG YHLN+ K  C LKVDL
Subjt:  MYMCVTKLLANRLVVWLICFVSLHQSAFVQGKSMVNNFLVYQELVGDYHLNTRKACCELKVDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACATGTGTGTCACGAAGCTGCTAGCCAATAGGTTAGTAGTGTGGCTTATATGTTTTGTCAGCCTCCATCAATCGGCCTTTGTGCAAGGGAAAAGTATGGTGAACAA
CTTCCTTGTGTACCAAGAACTTGTGGGGGACTATCATCTGAACACAAGGAAAGCTTGTTGCGAGCTAAAGGTTGATCTATAG
mRNA sequenceShow/hide mRNA sequence
ATGTACATGTGTGTCACGAAGCTGCTAGCCAATAGGTTAGTAGTGTGGCTTATATGTTTTGTCAGCCTCCATCAATCGGCCTTTGTGCAAGGGAAAAGTATGGTGAACAA
CTTCCTTGTGTACCAAGAACTTGTGGGGGACTATCATCTGAACACAAGGAAAGCTTGTTGCGAGCTAAAGGTTGATCTATAG
Protein sequenceShow/hide protein sequence
MYMCVTKLLANRLVVWLICFVSLHQSAFVQGKSMVNNFLVYQELVGDYHLNTRKACCELKVDL