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HG10011889 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10011889
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationChr01:14656503..14656736
RNA-Seq ExpressionHG10011889
SyntenyHG10011889
Gene Ontology termsGO:0005515 - protein binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008445200.1 PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Cucumis melo]2.3e-2381.69Show/hide
Query:  MYSCCASGIHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACAN
        MYSCCA GI+ ARKVFDEM KSDSVTW AMIGGYA VG STEAVALFREMQ  EVCPDEITMV +LSAC +
Subjt:  MYSCCASGIHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACAN

XP_022131416.1 pentatricopeptide repeat-containing protein At4g21065-like [Momordica charantia]2.3e-2380.28Show/hide
Query:  MYSCCASGIHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACAN
        MYSCCA GI++ARKVFDEM KSDSVTW AMIGGYA VG  TEAV+LFREMQ  EVCPDEITMV ILSAC +
Subjt:  MYSCCASGIHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACAN

XP_022951399.1 pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita moschata]2.3e-2380.28Show/hide
Query:  MYSCCASGIHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACAN
        MYSCC+ GI +ARKVFDEM KSDSVTW AMIGGYA VG STEAVALFREMQ  EVCPDEITMV +LSAC +
Subjt:  MYSCCASGIHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACAN

XP_023537014.1 pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita pepo subsp. pepo]2.3e-2380.28Show/hide
Query:  MYSCCASGIHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACAN
        MYSCC+ GI +ARKVFDEM KSDSVTW AMIGGYA VG STEAVALFREMQ  EVCPDEITMV +LSAC +
Subjt:  MYSCCASGIHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACAN

XP_038884201.1 pentatricopeptide repeat-containing protein At4g21065-like [Benincasa hispida]1.0e-2383.1Show/hide
Query:  MYSCCASGIHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACAN
        MYSCCA GI+ ARKVFDEM KSDSVTW AMIGGYA VG STEAVALFREMQ  EVCPDEITMV ILSAC +
Subjt:  MYSCCASGIHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACAN

TrEMBL top hitse value%identityAlignment
A0A0A0LQ71 DYW_deaminase domain-containing protein1.1e-2381.69Show/hide
Query:  MYSCCASGIHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACAN
        MYSCCA GI+ ARKVFDEM KSDSVTW AMIGGYA VG STEAVALFREMQ  EVCPDEITMV +LSAC +
Subjt:  MYSCCASGIHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACAN

A0A1S3BC37 pentatricopeptide repeat-containing protein At4g21065-like1.1e-2381.69Show/hide
Query:  MYSCCASGIHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACAN
        MYSCCA GI+ ARKVFDEM KSDSVTW AMIGGYA VG STEAVALFREMQ  EVCPDEITMV +LSAC +
Subjt:  MYSCCASGIHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACAN

A0A5A7V9A4 Pentatricopeptide repeat-containing protein1.1e-2381.69Show/hide
Query:  MYSCCASGIHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACAN
        MYSCCA GI+ ARKVFDEM KSDSVTW AMIGGYA VG STEAVALFREMQ  EVCPDEITMV +LSAC +
Subjt:  MYSCCASGIHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACAN

A0A6J1BQ70 pentatricopeptide repeat-containing protein At4g21065-like1.1e-2380.28Show/hide
Query:  MYSCCASGIHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACAN
        MYSCCA GI++ARKVFDEM KSDSVTW AMIGGYA VG  TEAV+LFREMQ  EVCPDEITMV ILSAC +
Subjt:  MYSCCASGIHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACAN

A0A6J1GHH7 pentatricopeptide repeat-containing protein At4g21065-like1.1e-2380.28Show/hide
Query:  MYSCCASGIHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACAN
        MYSCC+ GI +ARKVFDEM KSDSVTW AMIGGYA VG STEAVALFREMQ  EVCPDEITMV +LSAC +
Subjt:  MYSCCASGIHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACAN

SwissProt top hitse value%identityAlignment
O04590 Pentatricopeptide repeat-containing protein At1g62260, mitochondrial2.4e-1048.61Show/hide
Query:  MYSCCASGIHYARKVFDEM-LKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACAN
        MYS C   I  +R++FDEM LK + +TW AMIGGYA  G ++EA+ LF  M++  + P  IT V +L+ACA+
Subjt:  MYSCCASGIHYARKVFDEM-LKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACAN

O64705 Pentatricopeptide repeat-containing protein At2g344002.4e-1043.66Show/hide
Query:  MYSCCASGIHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACAN
        MY+ C   + YARK+FDE+ + D+V+W +MI GY+  G + +A+ LFR+M+     PDE T+V +L AC++
Subjt:  MYSCCASGIHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACAN

Q9LN01 Pentatricopeptide repeat-containing protein At1g08070, chloroplastic1.4e-1053.23Show/hide
Query:  IHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACA
        I  A+K+FDE+   D V+W AMI GYA  G   EA+ LF++M  T V PDE TMV ++SACA
Subjt:  IHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACA

Q9LSB8 Putative pentatricopeptide repeat-containing protein At3g159301.1e-1048.33Show/hide
Query:  ARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACAN
        AR  FD+M   D ++W  MI GY   GC  E++ +FREMQ+  + PDE TMV +L+ACA+
Subjt:  ARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACAN

Q9SUH6 Pentatricopeptide repeat-containing protein At4g307001.1e-1050Show/hide
Query:  IHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACA
        I  ARK+FDE  +    +W AMI GY   G + +A++LFREMQ +E  P+ +T+ CILSACA
Subjt:  IHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACA

Arabidopsis top hitse value%identityAlignment
AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein9.8e-1253.23Show/hide
Query:  IHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACA
        I  A+K+FDE+   D V+W AMI GYA  G   EA+ LF++M  T V PDE TMV ++SACA
Subjt:  IHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACA

AT1G62260.1 mitochondrial editing factor 91.7e-1148.61Show/hide
Query:  MYSCCASGIHYARKVFDEM-LKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACAN
        MYS C   I  +R++FDEM LK + +TW AMIGGYA  G ++EA+ LF  M++  + P  IT V +L+ACA+
Subjt:  MYSCCASGIHYARKVFDEM-LKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACAN

AT2G34400.1 Pentatricopeptide repeat (PPR-like) superfamily protein1.7e-1143.66Show/hide
Query:  MYSCCASGIHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACAN
        MY+ C   + YARK+FDE+ + D+V+W +MI GY+  G + +A+ LFR+M+     PDE T+V +L AC++
Subjt:  MYSCCASGIHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACAN

AT3G15930.1 Pentatricopeptide repeat (PPR) superfamily protein7.5e-1248.33Show/hide
Query:  ARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACAN
        AR  FD+M   D ++W  MI GY   GC  E++ +FREMQ+  + PDE TMV +L+ACA+
Subjt:  ARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACAN

AT4G30700.1 Pentatricopeptide repeat (PPR) superfamily protein7.5e-1250Show/hide
Query:  IHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACA
        I  ARK+FDE  +    +W AMI GY   G + +A++LFREMQ +E  P+ +T+ CILSACA
Subjt:  IHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACTCCTGCTGTGCCAGTGGGATCCATTATGCCCGGAAGGTGTTCGATGAAATGCTCAAGTCAGATTCTGTGACTTGGATTGCGATGATTGGTGGGTATGCTCATGT
AGGGTGCTCCACTGAAGCAGTGGCCTTATTTAGGGAGATGCAAACGACAGAGGTTTGCCCAGATGAGATCACTATGGTTTGCATTCTCTCTGCTTGTGCCAATCCCTTTT
GGAGCTACCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTACTCCTGCTGTGCCAGTGGGATCCATTATGCCCGGAAGGTGTTCGATGAAATGCTCAAGTCAGATTCTGTGACTTGGATTGCGATGATTGGTGGGTATGCTCATGT
AGGGTGCTCCACTGAAGCAGTGGCCTTATTTAGGGAGATGCAAACGACAGAGGTTTGCCCAGATGAGATCACTATGGTTTGCATTCTCTCTGCTTGTGCCAATCCCTTTT
GGAGCTACCTCTGA
Protein sequenceShow/hide protein sequence
MYSCCASGIHYARKVFDEMLKSDSVTWIAMIGGYAHVGCSTEAVALFREMQTTEVCPDEITMVCILSACANPFWSYL