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HG10011923 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10011923
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationChr01:15458336..15458665
RNA-Seq ExpressionHG10011923
SyntenyHG10011923
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0048583 - regulation of response to stimulus (biological process)
GO:0071704 - organic substance metabolic process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0016020 - membrane (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0016772 - transferase activity, transferring phosphorus-containing groups (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBN69274.1 TatD related DNase [Prunus dulcis]3.7e-1448.51Show/hide
Query:  FFKS-WIIVKADLLKAFQDFFLKEVVNKRTNENYIYLDPKTLKANRVGDFRPISLTTII--ATAKVLPEKLRQLLPDSIANTQATFVEGRKILDVILAAS
        FF+S W +VK DL+K  QDFF   +VN  TNE +I L PK   + +V DFRPISL T +    +KVL  +LR++L ++I+ TQ  FV+ R+ILD +L A+
Subjt:  FFKS-WIIVKADLLKAFQDFFLKEVVNKRTNENYIYLDPKTLKANRVGDFRPISLTTII--ATAKVLPEKLRQLLPDSIANTQATFVEGRKILDVILAAS

Query:  E
        E
Subjt:  E

RVW20986.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]1.1e-1342.72Show/hide
Query:  ISEFFKSWIIVKADLLKAFQDFFLKEVVNKRTNENYIYLDPKTLKANRVGDFRPISLTTII--ATAKVLPEKLRQLLPDSIANTQATFVEGRKILDVILA
        I+ F   W ++K DL++ F +F   E++N+ TN ++I L PK  ++ ++ DFRPISL T +    AKVL  +LR +L ++I +TQ  FV+GR+ILD +L 
Subjt:  ISEFFKSWIIVKADLLKAFQDFFLKEVVNKRTNENYIYLDPKTLKANRVGDFRPISLTTII--ATAKVLPEKLRQLLPDSIANTQATFVEGRKILDVILA

Query:  ASE
        A+E
Subjt:  ASE

RVW98505.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]8.2e-1443.69Show/hide
Query:  ISEFFKSWIIVKADLLKAFQDFFLKEVVNKRTNENYIYLDPKTLKANRVGDFRPISLTTII--ATAKVLPEKLRQLLPDSIANTQATFVEGRKILDVILA
        I+ F   W ++K DL++ F +F    ++N+ TN ++I L PK  ++ R+ DFRPISL T +    AKVL E+LR +L ++I +TQ  FV+GR+ILD +L 
Subjt:  ISEFFKSWIIVKADLLKAFQDFFLKEVVNKRTNENYIYLDPKTLKANRVGDFRPISLTTII--ATAKVLPEKLRQLLPDSIANTQATFVEGRKILDVILA

Query:  ASE
        A+E
Subjt:  ASE

VVA20479.1 Hypothetical predicted protein, partial [Prunus dulcis]1.1e-1347.52Show/hide
Query:  FFKS-WIIVKADLLKAFQDFFLKEVVNKRTNENYIYLDPKTLKANRVGDFRPISLTTII--ATAKVLPEKLRQLLPDSIANTQATFVEGRKILDVILAAS
        FF+S W +VK DL+K  QDFF   +VN  TNE +I L PK   + +V DFRPISL T +    +KVL  +LR++L ++I+ +Q  FV+ R+ILD +L A+
Subjt:  FFKS-WIIVKADLLKAFQDFFLKEVVNKRTNENYIYLDPKTLKANRVGDFRPISLTTII--ATAKVLPEKLRQLLPDSIANTQATFVEGRKILDVILAAS

Query:  E
        E
Subjt:  E

XP_023518084.1 uncharacterized protein LOC111781628 [Cucurbita pepo subsp. pepo]1.1e-1550.49Show/hide
Query:  SEFF-KSWIIVKADLLKAFQDFFLKEVVNKRTNENYIYLDPKTLKANRVGDFRPISLTTII--ATAKVLPEKLRQLLPDSIANTQATFVEGRKILDVILA
        SEFF K W  ++ D+++ F DFF   V+N   NE YIYL  K L A  V DFRPISLTT +    A+VL E+L+++LP +I   Q  FVEGR+ILD  L 
Subjt:  SEFF-KSWIIVKADLLKAFQDFFLKEVVNKRTNENYIYLDPKTLKANRVGDFRPISLTTII--ATAKVLPEKLRQLLPDSIANTQATFVEGRKILDVILA

Query:  ASE
        A+E
Subjt:  ASE

TrEMBL top hitse value%identityAlignment
A0A438CDE2 LINE-1 retrotransposable element ORF2 protein5.2e-1442.72Show/hide
Query:  ISEFFKSWIIVKADLLKAFQDFFLKEVVNKRTNENYIYLDPKTLKANRVGDFRPISLTTII--ATAKVLPEKLRQLLPDSIANTQATFVEGRKILDVILA
        I+ F   W ++K DL++ F +F   E++N+ TN ++I L PK  ++ ++ DFRPISL T +    AKVL  +LR +L ++I +TQ  FV+GR+ILD +L 
Subjt:  ISEFFKSWIIVKADLLKAFQDFFLKEVVNKRTNENYIYLDPKTLKANRVGDFRPISLTTII--ATAKVLPEKLRQLLPDSIANTQATFVEGRKILDVILA

Query:  ASE
        A+E
Subjt:  ASE

A0A438IPG2 Transposon TX1 uncharacterized 149 kDa protein3.9e-1443.69Show/hide
Query:  ISEFFKSWIIVKADLLKAFQDFFLKEVVNKRTNENYIYLDPKTLKANRVGDFRPISLTTII--ATAKVLPEKLRQLLPDSIANTQATFVEGRKILDVILA
        I+ F   W ++K DL++ F +F    ++N+ TN ++I L PK  ++ R+ DFRPISL T +    AKVL E+LR +L ++I +TQ  FV+GR+ILD +L 
Subjt:  ISEFFKSWIIVKADLLKAFQDFFLKEVVNKRTNENYIYLDPKTLKANRVGDFRPISLTTII--ATAKVLPEKLRQLLPDSIANTQATFVEGRKILDVILA

Query:  ASE
        A+E
Subjt:  ASE

A0A4Y1RS61 TatD related DNase5.2e-1447.52Show/hide
Query:  FFKS-WIIVKADLLKAFQDFFLKEVVNKRTNENYIYLDPKTLKANRVGDFRPISLTTII--ATAKVLPEKLRQLLPDSIANTQATFVEGRKILDVILAAS
        FF+S W +VK DL+K  QDFF   +VN  TNE +I L PK   + +V DFRPISL T +    +KVL  +LR++L ++I+ +Q  FV+ R+ILD +L A+
Subjt:  FFKS-WIIVKADLLKAFQDFFLKEVVNKRTNENYIYLDPKTLKANRVGDFRPISLTTII--ATAKVLPEKLRQLLPDSIANTQATFVEGRKILDVILAAS

Query:  E
        E
Subjt:  E

A0A5E4FWN6 Reverse transcriptase domain-containing protein (Fragment)5.2e-1447.52Show/hide
Query:  FFKS-WIIVKADLLKAFQDFFLKEVVNKRTNENYIYLDPKTLKANRVGDFRPISLTTII--ATAKVLPEKLRQLLPDSIANTQATFVEGRKILDVILAAS
        FF+S W +VK DL+K  QDFF   +VN  TNE +I L PK   + +V DFRPISL T +    +KVL  +LR++L ++I+ +Q  FV+ R+ILD +L A+
Subjt:  FFKS-WIIVKADLLKAFQDFFLKEVVNKRTNENYIYLDPKTLKANRVGDFRPISLTTII--ATAKVLPEKLRQLLPDSIANTQATFVEGRKILDVILAAS

Query:  E
        E
Subjt:  E

A0A5H2XQW2 TatD related DNase1.8e-1448.51Show/hide
Query:  FFKS-WIIVKADLLKAFQDFFLKEVVNKRTNENYIYLDPKTLKANRVGDFRPISLTTII--ATAKVLPEKLRQLLPDSIANTQATFVEGRKILDVILAAS
        FF+S W +VK DL+K  QDFF   +VN  TNE +I L PK   + +V DFRPISL T +    +KVL  +LR++L ++I+ TQ  FV+ R+ILD +L A+
Subjt:  FFKS-WIIVKADLLKAFQDFFLKEVVNKRTNENYIYLDPKTLKANRVGDFRPISLTTII--ATAKVLPEKLRQLLPDSIANTQATFVEGRKILDVILAAS

Query:  E
        E
Subjt:  E

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCAGTGAATTTTTTAAGTCTTGGATCATTGTTAAAGCAGACTTGCTTAAGGCGTTCCAAGATTTTTTTCTAAAGGAGGTTGTAAACAAGAGAACAAATGAG
AACTACATTTATCTGGATCCAAAGACGTTGAAGGCAAACAGAGTTGGGGACTTCCGTCCAATTAGCCTCACTACCATCATTGCCACTGCCAAAGTTCTTCCTGAG
AAGCTTAGACAATTGCTGCCGGATTCCATTGCTAATACCCAAGCAACTTTTGTGGAAGGAAGAAAAATTCTTGATGTCATCCTTGCAGCTTCTGAAGATGCGGGG
GGACTTGAAAGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGATCAGTGAATTTTTTAAGTCTTGGATCATTGTTAAAGCAGACTTGCTTAAGGCGTTCCAAGATTTTTTTCTAAAGGAGGTTGTAAACAAGAGAACAAATGAG
AACTACATTTATCTGGATCCAAAGACGTTGAAGGCAAACAGAGTTGGGGACTTCCGTCCAATTAGCCTCACTACCATCATTGCCACTGCCAAAGTTCTTCCTGAG
AAGCTTAGACAATTGCTGCCGGATTCCATTGCTAATACCCAAGCAACTTTTGTGGAAGGAAGAAAAATTCTTGATGTCATCCTTGCAGCTTCTGAAGATGCGGGG
GGACTTGAAAGCTAG
Protein sequenceShow/hide protein sequence
MISEFFKSWIIVKADLLKAFQDFFLKEVVNKRTNENYIYLDPKTLKANRVGDFRPISLTTIIATAKVLPEKLRQLLPDSIANTQATFVEGRKILDVILAASEDAG
GLES