; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10011924 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10011924
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationChr01:15458977..15459669
RNA-Seq ExpressionHG10011924
SyntenyHG10011924
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN75609.1 hypothetical protein VITISV_002943 [Vitis vinifera]6.5e-3739.72Show/hide
Query:  ISPLQYADHIIIFCSGDGLPLDNPWKVTSIFLGCSGLNLNLSKMSLLGINIFYDELNLQAELLECKKDCLPSNYLGFPLGGNHRSIGFWEPIVDKSRRKI
        +S LQ+AD  I F       L N   +  +F   SGL +NL K ++ GIN   + L+  A +LEC+    P +YLG PLGGN ++IGFW+P+V++  R++
Subjt:  ISPLQYADHIIIFCSGDGLPLDNPWKVTSIFLGCSGLNLNLSKMSLLGINIFYDELNLQAELLECKKDCLPSNYLGFPLGGNHRSIGFWEPIVDKSRRKI

Query:  AKWKK---------LLRCSCLSYFLDFEWVALFKPPKGVLKTLTKLIKDFYWEEGDCNLGSHLVNWKIVSLPSVRGGLEIGSLQQSNSALLTKWCWRFTT
          WKK          L  SCLS+   + +++LFK P  +   + K+ +DF W         HL+ W++VS P   GGL  G     NSALL KW WRF  
Subjt:  AKWKK---------LLRCSCLSYFLDFEWVALFKPPKGVLKTLTKLIKDFYWEEGDCNLGSHLVNWKIVSLPSVRGGLEIGSLQQSNSALLTKWCWRFTT

Query:  EEKALWRKVVASIY
        E   LW KV+ASIY
Subjt:  EEKALWRKVVASIY

RVW16834.1 putative ribonuclease H protein [Vitis vinifera]6.5e-3739.72Show/hide
Query:  ISPLQYADHIIIFCSGDGLPLDNPWKVTSIFLGCSGLNLNLSKMSLLGINIFYDELNLQAELLECKKDCLPSNYLGFPLGGNHRSIGFWEPIVDKSRRKI
        +S LQ+AD  I F       L N   +  +F   SGL +NL K ++ GIN   + L+  A +LEC+    P +YLG PLGGN ++IGFW+P+V++  R++
Subjt:  ISPLQYADHIIIFCSGDGLPLDNPWKVTSIFLGCSGLNLNLSKMSLLGINIFYDELNLQAELLECKKDCLPSNYLGFPLGGNHRSIGFWEPIVDKSRRKI

Query:  AKWKK---------LLRCSCLSYFLDFEWVALFKPPKGVLKTLTKLIKDFYWEEGDCNLGSHLVNWKIVSLPSVRGGLEIGSLQQSNSALLTKWCWRFTT
          WKK          L  SCLS+   + +++LFK P  +   + K+ +DF W         HL+ W++VS P   GGL  G     NSALL KW WRF  
Subjt:  AKWKK---------LLRCSCLSYFLDFEWVALFKPPKGVLKTLTKLIKDFYWEEGDCNLGSHLVNWKIVSLPSVRGGLEIGSLQQSNSALLTKWCWRFTT

Query:  EEKALWRKVVASIY
        E   LW KV+ASIY
Subjt:  EEKALWRKVVASIY

RVW19920.1 Biotin synthase, mitochondrial [Vitis vinifera]6.5e-3739.72Show/hide
Query:  ISPLQYADHIIIFCSGDGLPLDNPWKVTSIFLGCSGLNLNLSKMSLLGINIFYDELNLQAELLECKKDCLPSNYLGFPLGGNHRSIGFWEPIVDKSRRKI
        +S LQ+AD  I F       L N   +  +F   SGL +NL K ++ GIN   + L+  A +LEC+    P +YLG PLGGN ++IGFW+P+V++  R++
Subjt:  ISPLQYADHIIIFCSGDGLPLDNPWKVTSIFLGCSGLNLNLSKMSLLGINIFYDELNLQAELLECKKDCLPSNYLGFPLGGNHRSIGFWEPIVDKSRRKI

Query:  AKWKK---------LLRCSCLSYFLDFEWVALFKPPKGVLKTLTKLIKDFYWEEGDCNLGSHLVNWKIVSLPSVRGGLEIGSLQQSNSALLTKWCWRFTT
          WKK          L  SCLS+   + +++LFK P  +   + K+ +DF W         HL+ W++VS P   GGL  G     NSALL KW WRF  
Subjt:  AKWKK---------LLRCSCLSYFLDFEWVALFKPPKGVLKTLTKLIKDFYWEEGDCNLGSHLVNWKIVSLPSVRGGLEIGSLQQSNSALLTKWCWRFTT

Query:  EEKALWRKVVASIY
        E   LW KV+ASIY
Subjt:  EEKALWRKVVASIY

RVW55793.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]6.5e-3739.72Show/hide
Query:  ISPLQYADHIIIFCSGDGLPLDNPWKVTSIFLGCSGLNLNLSKMSLLGINIFYDELNLQAELLECKKDCLPSNYLGFPLGGNHRSIGFWEPIVDKSRRKI
        +S LQ+AD  I F       L N   +  +F   SGL +NL K ++ GIN   + L+  A +LEC+    P +YLG PLGGN ++IGFW+P+V++  R++
Subjt:  ISPLQYADHIIIFCSGDGLPLDNPWKVTSIFLGCSGLNLNLSKMSLLGINIFYDELNLQAELLECKKDCLPSNYLGFPLGGNHRSIGFWEPIVDKSRRKI

Query:  AKWKK---------LLRCSCLSYFLDFEWVALFKPPKGVLKTLTKLIKDFYWEEGDCNLGSHLVNWKIVSLPSVRGGLEIGSLQQSNSALLTKWCWRFTT
          WKK          L  SCLS+   + +++LFK P  +   + K+ +DF W         HL+ W++VS P   GGL  G     NSALL KW WRF  
Subjt:  AKWKK---------LLRCSCLSYFLDFEWVALFKPPKGVLKTLTKLIKDFYWEEGDCNLGSHLVNWKIVSLPSVRGGLEIGSLQQSNSALLTKWCWRFTT

Query:  EEKALWRKVVASIY
        E   LW KV+ASIY
Subjt:  EEKALWRKVVASIY

XP_022158566.1 uncharacterized protein LOC111025019 [Momordica charantia]5.9e-3838.57Show/hide
Query:  IISPLQYADHIIIFCSGDGLPLDNPWKVTSIFLGCSGLNLNLSKMSLLGINIFYDELNLQAELLECKKDCLPSNYLGFPLGGNHRSIGFWEPIVDKSRRK
        ++S L+YAD  IIFC      LD  W + S+F+  SGL +NL+K SL+GINI  +E   + + + C+ + +   YLG PLGGNHR I FW  +V+K+   
Subjt:  IISPLQYADHIIIFCSGDGLPLDNPWKVTSIFLGCSGLNLNLSKMSLLGINIFYDELNLQAELLECKKDCLPSNYLGFPLGGNHRSIGFWEPIVDKSRRK

Query:  IAKWKKLLRCSCLSYFLDFEWVALFKPPKGVLKTLTKLIKDFYWEEGDCNLGSHLVNWKIVSLPSVRGGLEIGSLQQSNSALLTKWCWRFTTEEKALWRK
                                   P  + K + K+++D +W     +   +LV W I SLP   GGL IG+    N+ALL KW W FT EE ALWR+
Subjt:  IAKWKKLLRCSCLSYFLDFEWVALFKPPKGVLKTLTKLIKDFYWEEGDCNLGSHLVNWKIVSLPSVRGGLEIGSLQQSNSALLTKWCWRFTTEEKALWRK

Query:  VVASIYKEDRLGRRFFVPKGNSK
        V+ASIY  D+ G     PKG +K
Subjt:  VVASIYKEDRLGRRFFVPKGNSK

TrEMBL top hitse value%identityAlignment
A0A6J1E196 uncharacterized protein LOC1110250192.8e-3838.57Show/hide
Query:  IISPLQYADHIIIFCSGDGLPLDNPWKVTSIFLGCSGLNLNLSKMSLLGINIFYDELNLQAELLECKKDCLPSNYLGFPLGGNHRSIGFWEPIVDKSRRK
        ++S L+YAD  IIFC      LD  W + S+F+  SGL +NL+K SL+GINI  +E   + + + C+ + +   YLG PLGGNHR I FW  +V+K+   
Subjt:  IISPLQYADHIIIFCSGDGLPLDNPWKVTSIFLGCSGLNLNLSKMSLLGINIFYDELNLQAELLECKKDCLPSNYLGFPLGGNHRSIGFWEPIVDKSRRK

Query:  IAKWKKLLRCSCLSYFLDFEWVALFKPPKGVLKTLTKLIKDFYWEEGDCNLGSHLVNWKIVSLPSVRGGLEIGSLQQSNSALLTKWCWRFTTEEKALWRK
                                   P  + K + K+++D +W     +   +LV W I SLP   GGL IG+    N+ALL KW W FT EE ALWR+
Subjt:  IAKWKKLLRCSCLSYFLDFEWVALFKPPKGVLKTLTKLIKDFYWEEGDCNLGSHLVNWKIVSLPSVRGGLEIGSLQQSNSALLTKWCWRFTTEEKALWRK

Query:  VVASIYKEDRLGRRFFVPKGNSK
        V+ASIY  D+ G     PKG +K
Subjt:  VVASIYKEDRLGRRFFVPKGNSK

A0A803P8A0 Uncharacterized protein1.1e-3740.85Show/hide
Query:  ISPLQYADHIIIFCSGDGLPLDNPWKVTSIFLGCSGLNLNLSKMSLLGINIFYDELNLQAELLECKKDCLPSNYLGFPLGGNHRSIGFWEPIVDKSRRKI
        +S LQ+AD  + F   D   L    K+   F G SGL +NL+K  LLGI +  + +   A L+ C+    P  YLG PLGG+ R   FWEP++DK  +++
Subjt:  ISPLQYADHIIIFCSGDGLPLDNPWKVTSIFLGCSGLNLNLSKMSLLGINIFYDELNLQAELLECKKDCLPSNYLGFPLGGNHRSIGFWEPIVDKSRRKI

Query:  AKWK--------KLLRCSCLSYFLDFEWVALFKPPKGVLKTLTKLIKDFYWEEGDCNLGSHLVNWKIVSLPSVRGGLEIGSLQQSNSALLTKWCWRFTTE
          WK        +L     +   L   +++LFK PK VLK L K+++DF+WE GD   G HLV W  V  P   GGL IG L+  N  LL KW WRF  E
Subjt:  AKWK--------KLLRCSCLSYFLDFEWVALFKPPKGVLKTLTKLIKDFYWEEGDCNLGSHLVNWKIVSLPSVRGGLEIGSLQQSNSALLTKWCWRFTTE

Query:  EKALWRKVVASIY
          +LW KV+ S Y
Subjt:  EKALWRKVVASIY

A0A803QI00 Uncharacterized protein6.3e-3839.44Show/hide
Query:  ISPLQYADHIIIFCSGDGLPLDNPWKVTSIFLGCSGLNLNLSKMSLLGINIFYDELNLQAELLECKKDCLPSNYLGFPLGGNHRSIGFWEPIVDKSRRKI
        IS LQ+AD  + F   D   L    ++   F G SGL +NL+K  LLGI++  + +   AE++ C+    P  YLG PLGG+ R   FWEP++DK  +++
Subjt:  ISPLQYADHIIIFCSGDGLPLDNPWKVTSIFLGCSGLNLNLSKMSLLGINIFYDELNLQAELLECKKDCLPSNYLGFPLGGNHRSIGFWEPIVDKSRRKI

Query:  AKWK--------KLLRCSCLSYFLDFEWVALFKPPKGVLKTLTKLIKDFYWEEGDCNLGSHLVNWKIVSLPSVRGGLEIGSLQQSNSALLTKWCWRFTTE
          WK        +L+    +   L   +++LFK PK VL+ + K+++DF+WE GD   G HLV W  V  P   GGL IG L+  N  LL KW WR+  E
Subjt:  AKWK--------KLLRCSCLSYFLDFEWVALFKPPKGVLKTLTKLIKDFYWEEGDCNLGSHLVNWKIVSLPSVRGGLEIGSLQQSNSALLTKWCWRFTTE

Query:  EKALWRKVVASIY
          +LW KV+ S Y
Subjt:  EKALWRKVVASIY

A0A803QQM3 Uncharacterized protein2.4e-3740.38Show/hide
Query:  ISPLQYADHIIIFCSGDGLPLDNPWKVTSIFLGCSGLNLNLSKMSLLGINIFYDELNLQAELLECKKDCLPSNYLGFPLGGNHRSIGFWEPIVDKSRRKI
        +S LQ+AD  + F   D   L    K+   F G SGL +NL+K  LLG+ +  D +   A  + C+    P  YLG PLGG+ R   FWEP++DK   ++
Subjt:  ISPLQYADHIIIFCSGDGLPLDNPWKVTSIFLGCSGLNLNLSKMSLLGINIFYDELNLQAELLECKKDCLPSNYLGFPLGGNHRSIGFWEPIVDKSRRKI

Query:  AKWK--------KLLRCSCLSYFLDFEWVALFKPPKGVLKTLTKLIKDFYWEEGDCNLGSHLVNWKIVSLPSVRGGLEIGSLQQSNSALLTKWCWRFTTE
          WK        +L     +   L   +++LFK PK VLK L K+++DF+WE GD   G HLV W  V  P   GGL IG L+  N  LL KW WRF  E
Subjt:  AKWK--------KLLRCSCLSYFLDFEWVALFKPPKGVLKTLTKLIKDFYWEEGDCNLGSHLVNWKIVSLPSVRGGLEIGSLQQSNSALLTKWCWRFTTE

Query:  EKALWRKVVASIY
          +LW KV+ S Y
Subjt:  EKALWRKVVASIY

F4NCK1 Reverse transcriptase domain-containing protein4.1e-3741.12Show/hide
Query:  ISPLQYADHIIIFCSGDGLPLDNPWKVTSIFLGCSGLNLNLSKMSLLGINIFYDELNLQAELLECKKDCLPSNYLGFPLGGNHRSIGFWEPIVDKSRRKI
        I+ LQYAD  IIFC      L N  K   +F   SGL +N  K SLLG+N+  + LN  A+ L CK   LP  YLG P+GGN   +  W+P++ K  +K+
Subjt:  ISPLQYADHIIIFCSGDGLPLDNPWKVTSIFLGCSGLNLNLSKMSLLGINIFYDELNLQAELLECKKDCLPSNYLGFPLGGNHRSIGFWEPIVDKSRRKI

Query:  AKWKKLLRC---------SCLSYFLDFEWVALFKPPKGVLKTLTKLIKDFYWEEGDCNLGSHLVNWKIVSLPSVRGGLEIGSLQQSNSALLTKWCWRFTT
        A WK  L           +CLS  L   +++LF  PKGVL  +  + + F W       G  LV+W +++LP   GGL +G+L   N+ALL KW WRF  
Subjt:  AKWKKLLRC---------SCLSYFLDFEWVALFKPPKGVLKTLTKLIKDFYWEEGDCNLGSHLVNWKIVSLPSVRGGLEIGSLQQSNSALLTKWCWRFTT

Query:  EEKALWRKVVASIY
        E  ALWR+VV   Y
Subjt:  EEKALWRKVVASIY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.6e-1227.78Show/hide
Query:  LPSNYLGFPLGGNHRSIGFWEPIVDKSRRKIAKWK--------KLLRCSCLSYFLDFEWVALFKPPKGVLKTLTKLIKDFYWEEGDCNLGSHLVNWKIVS
        LP  YLG PL     +   + P+V+K R +I KW         +L   S + + L   W++ F+ P   +K +  +   F W   + N     V W  V 
Subjt:  LPSNYLGFPLGGNHRSIGFWEPIVDKSRRKIAKWK--------KLLRCSCLSYFLDFEWVALFKPPKGVLKTLTKLIKDFYWEEGDCNLGSHLVNWKIVS

Query:  LPSVRGGLEIGSLQQSN---------SALLTKWCWRFTTEEKAL
         P   GGL I SL+++N         +  L  W W+   + +AL
Subjt:  LPSVRGGLEIGSLQQSN---------SALLTKWCWRFTTEEKAL

AT4G29090.1 Ribonuclease H-like superfamily protein3.3e-0731.76Show/hide
Query:  VALFKPPKGVLKTLTKLIKDFYWEEGDCNLGSHLVNWKIVSLPSVRGGLEIGSLQQSNSALLTKWCWRFTTEEKALWRKVVASIY
        +A F  PK V K +  ++ DF+W       G H   W  +S     GG+    ++  N ALL K  WR  +  ++L  KV  S Y
Subjt:  VALFKPPKGVLKTLTKLIKDFYWEEGDCNLGSHLVNWKIVSLPSVRGGLEIGSLQQSNSALLTKWCWRFTTEEKALWRKVVASIY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATTATTTCTCCTCTCCAATATGCAGATCATATAATCATTTTCTGCTCAGGCGATGGTCTTCCTTTGGATAATCCATGGAAGGTGACTTCTATTTTCCTTGGGTG
CTCAGGCCTGAATCTTAACCTTTCCAAAATGTCTCTGTTAGGCATTAATATTTTTTATGATGAGTTGAACTTGCAGGCGGAGCTTTTAGAGTGCAAAAAAGATTGTCTCC
CTTCGAATTATCTTGGTTTCCCGCTGGGAGGAAATCATCGCTCCATTGGCTTTTGGGAGCCCATCGTTGATAAATCCAGAAGAAAGATTGCTAAATGGAAGAAGCTGTTG
AGGTGCTCATGTTTATCCTATTTCCTTGATTTTGAATGGGTTGCCCTTTTTAAACCGCCAAAAGGGGTCCTCAAAACTTTGACAAAGTTGATTAAAGACTTCTATTGGGA
AGAAGGCGATTGTAATCTAGGTAGCCATCTTGTGAATTGGAAAATTGTTTCTCTTCCCTCAGTCAGGGGCGGCCTCGAGATTGGTTCCTTGCAGCAAAGCAACTCAGCTC
TCCTTACCAAATGGTGTTGGAGGTTTACTACAGAGGAAAAGGCGCTTTGGAGAAAGGTGGTGGCCAGTATCTACAAAGAAGATCGGCTAGGTAGGAGGTTCTTTGTGCCC
AAAGGAAACTCCAAGAAATCAGCCCTGGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGATTATTTCTCCTCTCCAATATGCAGATCATATAATCATTTTCTGCTCAGGCGATGGTCTTCCTTTGGATAATCCATGGAAGGTGACTTCTATTTTCCTTGGGTG
CTCAGGCCTGAATCTTAACCTTTCCAAAATGTCTCTGTTAGGCATTAATATTTTTTATGATGAGTTGAACTTGCAGGCGGAGCTTTTAGAGTGCAAAAAAGATTGTCTCC
CTTCGAATTATCTTGGTTTCCCGCTGGGAGGAAATCATCGCTCCATTGGCTTTTGGGAGCCCATCGTTGATAAATCCAGAAGAAAGATTGCTAAATGGAAGAAGCTGTTG
AGGTGCTCATGTTTATCCTATTTCCTTGATTTTGAATGGGTTGCCCTTTTTAAACCGCCAAAAGGGGTCCTCAAAACTTTGACAAAGTTGATTAAAGACTTCTATTGGGA
AGAAGGCGATTGTAATCTAGGTAGCCATCTTGTGAATTGGAAAATTGTTTCTCTTCCCTCAGTCAGGGGCGGCCTCGAGATTGGTTCCTTGCAGCAAAGCAACTCAGCTC
TCCTTACCAAATGGTGTTGGAGGTTTACTACAGAGGAAAAGGCGCTTTGGAGAAAGGTGGTGGCCAGTATCTACAAAGAAGATCGGCTAGGTAGGAGGTTCTTTGTGCCC
AAAGGAAACTCCAAGAAATCAGCCCTGGTTTGA
Protein sequenceShow/hide protein sequence
MEIISPLQYADHIIIFCSGDGLPLDNPWKVTSIFLGCSGLNLNLSKMSLLGINIFYDELNLQAELLECKKDCLPSNYLGFPLGGNHRSIGFWEPIVDKSRRKIAKWKKLL
RCSCLSYFLDFEWVALFKPPKGVLKTLTKLIKDFYWEEGDCNLGSHLVNWKIVSLPSVRGGLEIGSLQQSNSALLTKWCWRFTTEEKALWRKVVASIYKEDRLGRRFFVP
KGNSKKSALV