CuGenDBv2

Gene ID	HG10011943
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	preprotein translocase subunit SCY2, chloroplastic
Genome location	Chr01:15645918..15648325
RNA-Seq Expression	HG10011943
Synteny	HG10011943
Gene Ontology terms	GO:0015031 - protein transport (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR002208 - SecY/SEC61-alpha family IPR023201 - SecY domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004140093.2 preprotein translocase subunit SCY2, chloroplastic [Cucumis sativus]

4.1e-101

88.99

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Query:  MEATPHCTRLLRPALFPTIPSKFRVAAAYDVQFCHFKFGRSATVINFNSLKFKGRNNVLLNRPLVSKVNQKSFDCLSNQCQ-SRMNVKATSEQCLDLETF
        MEATP+CTRLLRP L  ++ SKF VAAAYDVQFCHFKFGRS  VINFN+ KFKGRNNVLL RPLVSKVNQKSFDC SNQCQ SRMNVKATSEQCLDLETF
Subjt:  MEATPHCTRLLRPALFPTIPSKFRVAAAYDVQFCHFKFGRSATVINFNSLKFKGRNNVLLNRPLVSKVNQKSFDCLSNQCQ-SRMNVKATSEQCLDLETF

Query:  SQESNDGDAFLTSPNGTNFDIRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDEL
        SQESNDGDAFLTS NGTNFDI KPKS+ FRNRFLNL+RLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDEL
Subjt:  SQESNDGDAFLTSPNGTNFDIRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDEL

Query:  GNFTTEMKMSFFQLVMGP
        G+FTTEMKMSFFQL + P
Subjt:  GNFTTEMKMSFFQLVMGP

XP_008449450.1 PREDICTED: preprotein translocase subunit SCY2, chloroplastic [Cucumis melo]

2.1e-100

88.53

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Query:  MEATPHCTRLLRPALFPTIPSKFRVAAAYDVQFCHFKFGRSATVINFNSLKFKGRNNVLLNRPLVSKVNQKSFDCLSNQCQ-SRMNVKATSEQCLDLETF
        MEATP CTRLLRP L  ++ SKFRVAAAYDVQFCHFKFGRS  VINFN+ KFKGRNNVLL RPLVSK+NQKSFDC SNQCQ SRMNVKATSEQCLDLETF
Subjt:  MEATPHCTRLLRPALFPTIPSKFRVAAAYDVQFCHFKFGRSATVINFNSLKFKGRNNVLLNRPLVSKVNQKSFDCLSNQCQ-SRMNVKATSEQCLDLETF

Query:  SQESNDGDAFLTSPNGTNFDIRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDEL
        SQESNDGDAFLTS NGTNFDI KPKS+ FRNRFLNL+RLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGS DEL
Subjt:  SQESNDGDAFLTSPNGTNFDIRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDEL

Query:  GNFTTEMKMSFFQLVMGP
        G+FTTEMKMSFFQL + P
Subjt:  GNFTTEMKMSFFQLVMGP

XP_022963692.1 preprotein translocase subunit SCY2, chloroplastic [Cucurbita moschata]

3.5e-100

88.07

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Query:  MEATPHCTRLLRPALFPTIPSKFRVAAAYDVQFCHFKFGRSATVINFNSLKFKGRNNVLLNRPLVSKVNQKSFDCLSNQCQ-SRMNVKATSEQCLDLETF
        MEA P CTRL  PALFPT PSKFRVAAAYDVQFC  KFGRSA+VINFNSLKFKGRNNVLL+RP VSKVN+KSFDCLSNQC+ SRMNVKATSEQCLDLETF
Subjt:  MEATPHCTRLLRPALFPTIPSKFRVAAAYDVQFCHFKFGRSATVINFNSLKFKGRNNVLLNRPLVSKVNQKSFDCLSNQCQ-SRMNVKATSEQCLDLETF

Query:  SQESNDGDAFLTSPNGTNFDIRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDEL
        SQE NDGDAF TSPNGTN D  KP+SKMFRNRFLNL+RLRSVLNNAAESFFKSEIRRRLFVTAVLIVISR+GYFIPLPG+DRRLIPQDYLSFVSGSVDEL
Subjt:  SQESNDGDAFLTSPNGTNFDIRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDEL

Query:  GNFTTEMKMSFFQLVMGP
        G+FTTEMKMSFFQL + P
Subjt:  GNFTTEMKMSFFQLVMGP

XP_038888194.1 preprotein translocase subunit SCY2, chloroplastic isoform X1 [Benincasa hispida]

8.6e-107

93.12

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Query:  MEATPHCTRLLRPALFPTIPSKFRVAAAYDVQFCHFKFGRSATVINFNSLKFKGRNNVLLNRPLVSKVNQKSFDCLSNQCQ-SRMNVKATSEQCLDLETF
        ME TPHCTRLLRPA FPTIPSKF VAA+YDVQFCHFKFGRSATVINFN LKFKGRNNVLLNRPLVSKVNQKS DCLSNQCQ SRMNVKATSEQCLDL+TF
Subjt:  MEATPHCTRLLRPALFPTIPSKFRVAAAYDVQFCHFKFGRSATVINFNSLKFKGRNNVLLNRPLVSKVNQKSFDCLSNQCQ-SRMNVKATSEQCLDLETF

Query:  SQESNDGDAFLTSPNGTNFDIRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDEL
        SQESNDGDAFLTSPN TNFDI KPKSKMFRNRFLNL+RLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDEL
Subjt:  SQESNDGDAFLTSPNGTNFDIRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDEL

Query:  GNFTTEMKMSFFQLVMGP
        G+FTTEMKMSFFQL + P
Subjt:  GNFTTEMKMSFFQLVMGP

XP_038888195.1 preprotein translocase subunit SCY2, chloroplastic isoform X2 [Benincasa hispida]

8.6e-107

93.12

Show/hide

Query:  MEATPHCTRLLRPALFPTIPSKFRVAAAYDVQFCHFKFGRSATVINFNSLKFKGRNNVLLNRPLVSKVNQKSFDCLSNQCQ-SRMNVKATSEQCLDLETF
        ME TPHCTRLLRPA FPTIPSKF VAA+YDVQFCHFKFGRSATVINFN LKFKGRNNVLLNRPLVSKVNQKS DCLSNQCQ SRMNVKATSEQCLDL+TF
Subjt:  MEATPHCTRLLRPALFPTIPSKFRVAAAYDVQFCHFKFGRSATVINFNSLKFKGRNNVLLNRPLVSKVNQKSFDCLSNQCQ-SRMNVKATSEQCLDLETF

Query:  SQESNDGDAFLTSPNGTNFDIRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDEL
        SQESNDGDAFLTSPN TNFDI KPKSKMFRNRFLNL+RLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDEL
Subjt:  SQESNDGDAFLTSPNGTNFDIRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDEL

Query:  GNFTTEMKMSFFQLVMGP
        G+FTTEMKMSFFQL + P
Subjt:  GNFTTEMKMSFFQLVMGP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KHN4 Uncharacterized protein

2.0e-101

88.99

Show/hide

Query:  MEATPHCTRLLRPALFPTIPSKFRVAAAYDVQFCHFKFGRSATVINFNSLKFKGRNNVLLNRPLVSKVNQKSFDCLSNQCQ-SRMNVKATSEQCLDLETF
        MEATP+CTRLLRP L  ++ SKF VAAAYDVQFCHFKFGRS  VINFN+ KFKGRNNVLL RPLVSKVNQKSFDC SNQCQ SRMNVKATSEQCLDLETF
Subjt:  MEATPHCTRLLRPALFPTIPSKFRVAAAYDVQFCHFKFGRSATVINFNSLKFKGRNNVLLNRPLVSKVNQKSFDCLSNQCQ-SRMNVKATSEQCLDLETF

Query:  SQESNDGDAFLTSPNGTNFDIRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDEL
        SQESNDGDAFLTS NGTNFDI KPKS+ FRNRFLNL+RLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDEL
Subjt:  SQESNDGDAFLTSPNGTNFDIRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDEL

Query:  GNFTTEMKMSFFQLVMGP
        G+FTTEMKMSFFQL + P
Subjt:  GNFTTEMKMSFFQLVMGP

A0A1S3BM25 preprotein translocase subunit SCY2, chloroplastic

9.9e-101

88.53

Show/hide

Query:  MEATPHCTRLLRPALFPTIPSKFRVAAAYDVQFCHFKFGRSATVINFNSLKFKGRNNVLLNRPLVSKVNQKSFDCLSNQCQ-SRMNVKATSEQCLDLETF
        MEATP CTRLLRP L  ++ SKFRVAAAYDVQFCHFKFGRS  VINFN+ KFKGRNNVLL RPLVSK+NQKSFDC SNQCQ SRMNVKATSEQCLDLETF
Subjt:  MEATPHCTRLLRPALFPTIPSKFRVAAAYDVQFCHFKFGRSATVINFNSLKFKGRNNVLLNRPLVSKVNQKSFDCLSNQCQ-SRMNVKATSEQCLDLETF

Query:  SQESNDGDAFLTSPNGTNFDIRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDEL
        SQESNDGDAFLTS NGTNFDI KPKS+ FRNRFLNL+RLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGS DEL
Subjt:  SQESNDGDAFLTSPNGTNFDIRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDEL

Query:  GNFTTEMKMSFFQLVMGP
        G+FTTEMKMSFFQL + P
Subjt:  GNFTTEMKMSFFQLVMGP

A0A6J1DS34 preprotein translocase subunit SCY2, chloroplastic isoform X2

2.5e-88

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Query:  MEATPHCTRLLR--PALFPTIPSKFRVAAAYDVQFCHFKFGRSATVINFNSLKFKGRNNVLLNRPLVSKVNQKSFDCLSNQCQ-SRMNVKATSEQCLDLE
        MEAT H TRLL   P LFPT  SKFRVA AYDV+FC  +FGRS+TVIN  SL+FKGR + L NR    KVNQKSF+CLSNQCQ S +NVKATSEQCLDLE
Subjt:  MEATPHCTRLLR--PALFPTIPSKFRVAAAYDVQFCHFKFGRSATVINFNSLKFKGRNNVLLNRPLVSKVNQKSFDCLSNQCQ-SRMNVKATSEQCLDLE

Query:  TFSQESNDGDAFLTSPNGTNFDIRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVD
        TF QES DGDAFLTSPNG++FD  KP+S+ F NRFLNL+RLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVD
Subjt:  TFSQESNDGDAFLTSPNGTNFDIRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVD

Query:  ELGNFTTEMKMSFFQLVMGP
        ELG+FTTEMKMSFFQL + P
Subjt:  ELGNFTTEMKMSFFQLVMGP

A0A6J1HFX8 preprotein translocase subunit SCY2, chloroplastic

1.7e-100

88.07

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Query:  MEATPHCTRLLRPALFPTIPSKFRVAAAYDVQFCHFKFGRSATVINFNSLKFKGRNNVLLNRPLVSKVNQKSFDCLSNQCQ-SRMNVKATSEQCLDLETF
        MEA P CTRL  PALFPT PSKFRVAAAYDVQFC  KFGRSA+VINFNSLKFKGRNNVLL+RP VSKVN+KSFDCLSNQC+ SRMNVKATSEQCLDLETF
Subjt:  MEATPHCTRLLRPALFPTIPSKFRVAAAYDVQFCHFKFGRSATVINFNSLKFKGRNNVLLNRPLVSKVNQKSFDCLSNQCQ-SRMNVKATSEQCLDLETF

Query:  SQESNDGDAFLTSPNGTNFDIRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDEL
        SQE NDGDAF TSPNGTN D  KP+SKMFRNRFLNL+RLRSVLNNAAESFFKSEIRRRLFVTAVLIVISR+GYFIPLPG+DRRLIPQDYLSFVSGSVDEL
Subjt:  SQESNDGDAFLTSPNGTNFDIRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDEL

Query:  GNFTTEMKMSFFQLVMGP
        G+FTTEMKMSFFQL + P
Subjt:  GNFTTEMKMSFFQLVMGP

A0A6J1HWW7 preprotein translocase subunit SCY2, chloroplastic

1.1e-94

84.86

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Query:  MEATPHCTRLLRPALFPTIPSKFRVAAAYDVQFCHFKFGRSATVINFNSLKFKGRNNVLLNRPLVSKVNQKSFDCLSNQCQ-SRMNVKATSEQCLDLETF
        MEA P CTR     LFPT PSKFRVAAAYDVQFC  KFGRSA VINFNSLK KGRNNVLL+RP VSKVN+KSFDCLSNQC+ SRMNVKATSEQCLDLETF
Subjt:  MEATPHCTRLLRPALFPTIPSKFRVAAAYDVQFCHFKFGRSATVINFNSLKFKGRNNVLLNRPLVSKVNQKSFDCLSNQCQ-SRMNVKATSEQCLDLETF

Query:  SQESNDGDAFLTSPNGTNFDIRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDEL
        SQE NDGD F TSPNGTN +  KP+SKMFRNRFLNL+RLRS LNNAAESFFKSEIRRRLFVTAVLIVISR+GYFIPLPG+DRRLIPQDYLSFVSGSVDEL
Subjt:  SQESNDGDAFLTSPNGTNFDIRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDEL

Query:  GNFTTEMKMSFFQLVMGP
        G+FTTEMKMSFFQL + P
Subjt:  GNFTTEMKMSFFQLVMGP

SwissProt top hits

e value

%identity

Alignment

F4IQV7 Preprotein translocase subunit SCY2, chloroplastic

1.4e-35

Show/hide

Query:  RSATVINFNSLKFKGRNNVLLNRPLVSKVNQKSFDCLSNQCQSRMNVKATSEQ----CLDLETFSQESNDGDAFLTSPNGTNFDIRKPKSKMFRNRFLNL
        R     N N  + +  +++ +NR  +    +KSF    N      +   +SE+     LD+E    +S D      S         +PKS  FRNRFL+ 
Subjt:  RSATVINFNSLKFKGRNNVLLNRPLVSKVNQKSFDCLSNQCQSRMNVKATSEQ----CLDLETFSQESNDGDAFLTSPNGTNFDIRKPKSKMFRNRFLNL

Query:  LRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDELGNFTTEMKMSFFQLVMGP
        +R+ SVLN AAE FFKSEIRRRLFVTAVL+V+SRVGYFIPLPGFDRRLIPQDYLSFVSGSV+ELG F  E+K+S FQL + P
Subjt:  LRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDELGNFTTEMKMSFFQLVMGP

Arabidopsis top hits

e value

%identity

Alignment

AT2G31530.1 SecY protein transport family protein

1.0e-36

Show/hide

Query:  RSATVINFNSLKFKGRNNVLLNRPLVSKVNQKSFDCLSNQCQSRMNVKATSEQ----CLDLETFSQESNDGDAFLTSPNGTNFDIRKPKSKMFRNRFLNL
        R     N N  + +  +++ +NR  +    +KSF    N      +   +SE+     LD+E    +S D      S         +PKS  FRNRFL+ 
Subjt:  RSATVINFNSLKFKGRNNVLLNRPLVSKVNQKSFDCLSNQCQSRMNVKATSEQ----CLDLETFSQESNDGDAFLTSPNGTNFDIRKPKSKMFRNRFLNL

Query:  LRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDELGNFTTEMKMSFFQLVMGP
        +R+ SVLN AAE FFKSEIRRRLFVTAVL+V+SRVGYFIPLPGFDRRLIPQDYLSFVSGSV+ELG F  E+K+S FQL + P
Subjt:  LRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDELGNFTTEMKMSFFQLVMGP

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAAGCAACGCCTCACTGCACTCGTCTTCTCCGTCCTGCTCTGTTCCCTACTATACCCTCAAAGTTTCGAGTTGCTGCAGCTTATGACGTCCAATTCTGTCATTTCAA
GTTTGGTAGATCTGCCACTGTGATTAATTTCAACTCTCTAAAATTCAAGGGAAGAAATAATGTGTTATTGAATAGGCCTTTGGTCTCTAAAGTGAACCAAAAGTCGTTTG
ATTGTTTGTCAAATCAGTGCCAAAGCCGTATGAATGTCAAGGCAACATCTGAGCAGTGTCTAGACCTTGAAACTTTTTCACAGGAATCGAATGATGGGGATGCTTTTCTC
ACTTCTCCCAATGGCACTAACTTTGATATCAGGAAGCCTAAATCTAAAATGTTTAGAAATAGATTCTTGAATCTTCTACGTCTTCGTTCTGTTCTCAACAATGCTGCTGA
ATCATTTTTTAAAAGTGAAATACGACGAAGGTTATTTGTAACAGCAGTGCTAATTGTAATAAGTCGGGTTGGATACTTCATTCCTCTTCCTGGGTTTGATAGGAGGTTGA
TACCACAAGATTACCTTAGCTTTGTTTCTGGATCTGTTGATGAACTTGGTAATTTTACTACGGAGATGAAAATGTCTTTTTTCCAGCTAGTCATGGGGCCCACAAACTCC
TTGGCCAAACAAGGAGTGGAGTTCACAACTCCTACTCCCCAACTCCTACTTCTCAACAACTTCCTAAACTTTATAACTCCTTACTCCTTAGGCCGAACACACCCTTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MEATPHCTRLLRPALFPTIPSKFRVAAAYDVQFCHFKFGRSATVINFNSLKFKGRNNVLLNRPLVSKVNQKSFDCLSNQCQSRMNVKATSEQCLDLETFSQESNDGDAFL
TSPNGTNFDIRKPKSKMFRNRFLNLLRLRSVLNNAAESFFKSEIRRRLFVTAVLIVISRVGYFIPLPGFDRRLIPQDYLSFVSGSVDELGNFTTEMKMSFFQLVMGPTNS
LAKQGVEFTTPTPQLLLLNNFLNFITPYSLGRTHP

HG10011943 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome