CuGenDBv2

Gene ID	HG10011953
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Ribosome-recycling factor, chloroplastic
Genome location	Chr01:15711360..15718243
RNA-Seq Expression	HG10011953
Synteny	HG10011953
Gene Ontology terms	GO:0009658 - chloroplast organization (biological process) GO:0009793 - embryo development ending in seed dormancy (biological process) GO:0032544 - plastid translation (biological process) GO:0050832 - defense response to fungus (biological process) GO:0005739 - mitochondrion (cellular component) GO:0009507 - chloroplast (cellular component) GO:0043023 - ribosomal large subunit binding (molecular function)
InterPro domains	IPR002661 - Ribosome recycling factor IPR023584 - Ribosome recycling factor domain IPR036191 - RRF superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

GAY40688.1 hypothetical protein CUMW_053890 [Citrus unshiu]

1.5e-67

92.11

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Query:  KARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER
        KARMEKTID VR++FNS+RTGRSNPAMLDKIEVEYYGSPVSLKSIAQI+TPD+SSLL+QPYDKSSLKSIEKAIV+SDLG+TPNNDGEVIRLTLPQLTSER
Subjt:  KARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER

Query:  RKELSKVVAKQAEEGKEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEK
        RKELSKVVAKQAEEGKEKKLSEDNVKDLSSDLQKLTD+YMKKID+I+KQKEK
Subjt:  RKELSKVVAKQAEEGKEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEK

KAA0057317.1 ribosome-recycling factor [Cucumis melo var. makuwa]

4.6e-69

85.47

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Query:  KARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER
        KARMEKTIDTVRS+FNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER
Subjt:  KARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER

Query:  RKELSKVVAKQAEEG-------------------KEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEKVWSISTDL
        RKELSKVVAKQAEEG                   KEKKLSEDNVKDLSSDLQKLTDDYMKKID ++KQKEKV SIS +L
Subjt:  RKELSKVVAKQAEEG-------------------KEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEKVWSISTDL

XP_008449433.1 PREDICTED: ribosome-recycling factor, chloroplastic isoform X2 [Cucumis melo]

5.7e-67

86.55

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Query:  KARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER
        KARMEKTIDTVRS+FNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER
Subjt:  KARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER

Query:  RKELSKVVAKQAEEG-------------------KEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEK
        RKELSKVVAKQAEEG                   KEKKLSEDNVKDLSSDLQKLTDDYMKKID ++KQKEK
Subjt:  RKELSKVVAKQAEEG-------------------KEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEK

XP_038888223.1 ribosome-recycling factor, chloroplastic isoform X1 [Benincasa hispida]

3.3e-67

87.13

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Query:  KARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER
        KARMEKTIDTVRS+FNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER
Subjt:  KARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER

Query:  RKELSKVVAKQAEEG-------------------KEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEK
        RKELSKVVAKQAEEG                   KEKKLSEDNVKDLSSDLQKLTDDYMKKID I+KQKEK
Subjt:  RKELSKVVAKQAEEG-------------------KEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEK

XP_038888224.1 ribosome-recycling factor, chloroplastic isoform X2 [Benincasa hispida]

3.3e-67

87.13

Show/hide

Query:  KARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER
        KARMEKTIDTVRS+FNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER
Subjt:  KARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER

Query:  RKELSKVVAKQAEEG-------------------KEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEK
        RKELSKVVAKQAEEG                   KEKKLSEDNVKDLSSDLQKLTDDYMKKID I+KQKEK
Subjt:  RKELSKVVAKQAEEG-------------------KEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KJG4 Ribosome-recycling factor, chloroplastic

4.7e-67

85.96

Show/hide

Query:  KARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER
        KARMEKTIDTVRS+FNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLG+TPNNDGEVIRLTLPQLTSER
Subjt:  KARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER

Query:  RKELSKVVAKQAEEG-------------------KEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEK
        RKELSKVVAKQAEEG                   KEKKLSEDNVKDLSSDLQKLTDDYMKKID ++KQKEK
Subjt:  RKELSKVVAKQAEEG-------------------KEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEK

A0A1S3BMN4 Ribosome-recycling factor, chloroplastic

2.7e-67

86.55

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Query:  KARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER
        KARMEKTIDTVRS+FNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER
Subjt:  KARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER

Query:  RKELSKVVAKQAEEG-------------------KEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEK
        RKELSKVVAKQAEEG                   KEKKLSEDNVKDLSSDLQKLTDDYMKKID ++KQKEK
Subjt:  RKELSKVVAKQAEEG-------------------KEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEK

A0A1S3BMY6 Ribosome-recycling factor, chloroplastic

2.7e-67

86.55

Show/hide

Query:  KARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER
        KARMEKTIDTVRS+FNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER
Subjt:  KARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER

Query:  RKELSKVVAKQAEEG-------------------KEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEK
        RKELSKVVAKQAEEG                   KEKKLSEDNVKDLSSDLQKLTDDYMKKID ++KQKEK
Subjt:  RKELSKVVAKQAEEG-------------------KEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEK

A0A2H5NKI1 Ribosome-recycling factor, chloroplastic

7.2e-68

92.11

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Query:  KARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER
        KARMEKTID VR++FNS+RTGRSNPAMLDKIEVEYYGSPVSLKSIAQI+TPD+SSLL+QPYDKSSLKSIEKAIV+SDLG+TPNNDGEVIRLTLPQLTSER
Subjt:  KARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER

Query:  RKELSKVVAKQAEEGKEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEK
        RKELSKVVAKQAEEGKEKKLSEDNVKDLSSDLQKLTD+YMKKID+I+KQKEK
Subjt:  RKELSKVVAKQAEEGKEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEK

A0A5A7URP7 Ribosome-recycling factor, chloroplastic

2.2e-69

85.47

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Query:  KARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER
        KARMEKTIDTVRS+FNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER
Subjt:  KARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER

Query:  RKELSKVVAKQAEEG-------------------KEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEKVWSISTDL
        RKELSKVVAKQAEEG                   KEKKLSEDNVKDLSSDLQKLTDDYMKKID ++KQKEKV SIS +L
Subjt:  RKELSKVVAKQAEEG-------------------KEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEKVWSISTDL

SwissProt top hits

e value

%identity

Alignment

A2YMU2 Ribosome-recycling factor, chloroplastic

1.8e-55

67.84

Show/hide

Query:  KARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER
        + RMEK I+TV+++FN++RTGR+NPAMLD+IEVEYYG+PV+LKSIAQI+TPDA+SLL+QPYDKSSLK IEK IV ++LG+TP+NDGEVIR+T+P LTS+R
Subjt:  KARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER

Query:  RKELSKVVAKQAEEG-------------------KEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEK
        RKEL+K VAK AEEG                   KEKKLSEDNVKDLS+DLQK+TD+YMKKI+AI KQKE+
Subjt:  RKELSKVVAKQAEEG-------------------KEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEK

A3BLC3 Ribosome-recycling factor, chloroplastic

1.8e-55

67.84

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Query:  KARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER
        + RMEK I+TV+++FN++RTGR+NPAMLD+IEVEYYG+PV+LKSIAQI+TPDA+SLL+QPYDKSSLK IEK IV ++LG+TP+NDGEVIR+T+P LTS+R
Subjt:  KARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER

Query:  RKELSKVVAKQAEEG-------------------KEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEK
        RKEL+K VAK AEEG                   KEKKLSEDNVKDLS+DLQK+TD+YMKKI+AI KQKE+
Subjt:  RKELSKVVAKQAEEG-------------------KEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEK

P37706 Ribosome-recycling factor, chloroplastic (Fragment)

1.6e-59

73.1

Show/hide

Query:  KARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER
        K RMEKTI+ V++SFNSIRT RSNP MLDKI+VEYYG+P SLKSIAQISTPD+SSLLV PYDKSSLK IEKAIVNSDLG+TPNNDG+VIRL++PQLT++R
Subjt:  KARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER

Query:  RKELSKVVAKQAEEG-------------------KEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEK
        RKELSK+VAKQAEEG                   KEKKLSEDNVKDLSSDLQK+ D+Y+KK+D+I KQKEK
Subjt:  RKELSKVVAKQAEEG-------------------KEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEK

P82231 Ribosome-recycling factor, chloroplastic

1.3e-58

68.16

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Query:  EAIARVNKKARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLT
        +++   N K RMEKTI+T+RS+FNS+RT R++P MLD+IEVEYYG+PVSLKSIAQISTPDASSLL+ PYDKSSLK+IEKAIV S LG++PNNDGEVIRL+
Subjt:  EAIARVNKKARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLT

Query:  LPQLTSERRKELSKVVAKQAEEG-------------------KEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEK
        LP LTS+RRKEL+KVV+K AEEG                   KEKKLSEDNVKDLS+DLQKLTD+YMKK+++I+KQKE+
Subjt:  LPQLTSERRKELSKVVAKQAEEG-------------------KEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEK

Q9M1X0 Ribosome-recycling factor, chloroplastic

2.2e-61

76.61

Show/hide

Query:  KARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER
        K++MEKTI+T+R+SFNSIRTGRSN AMLDKIEVEYYGSPVSLKSIAQISTPD SSLL+QPYDKSSLK+IEKAIVNSDLG+TPNNDG+VIRL+LP LTS+R
Subjt:  KARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER

Query:  RKELSKVVAKQAEEG-------------------KEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEK
        RKELSKVVAKQ+EEG                   KEKKLSEDNVKDLSSDLQKL D YMKKI+ ++KQKEK
Subjt:  RKELSKVVAKQAEEG-------------------KEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEK

Arabidopsis top hits

e value

%identity

Alignment

AT3G01800.1 Ribosome recycling factor

1.4e-18

35.12

Show/hide

Query:  ARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERR
        ++ME  ID +      +RTGR+ P MLD I VE  G  + L  +A +S  D  +L V PYD  ++K +EKAIV S LGL P  DG+ +  ++P LT E  
Subjt:  ARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSERR

Query:  KELSKVVAKQAEEGKE-----------------KKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEK
        + + K+V K +E  K+                   L +D VK L  ++ +LT  ++K  + + K KEK
Subjt:  KELSKVVAKQAEEGKE-----------------KKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEK

AT3G63190.1 ribosome recycling factor, chloroplast precursor

1.5e-62

76.61

Show/hide

Query:  KARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER
        K++MEKTI+T+R+SFNSIRTGRSN AMLDKIEVEYYGSPVSLKSIAQISTPD SSLL+QPYDKSSLK+IEKAIVNSDLG+TPNNDG+VIRL+LP LTS+R
Subjt:  KARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLTLPQLTSER

Query:  RKELSKVVAKQAEEG-------------------KEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEK
        RKELSKVVAKQ+EEG                   KEKKLSEDNVKDLSSDLQKL D YMKKI+ ++KQKEK
Subjt:  RKELSKVVAKQAEEG-------------------KEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAGGTAAGAGTTGAAGCAATTGCAAGGGTTAACAAGAAAGCAAGGATGGAAAAGACTATCGATACTGTTCGGTCTAGTTTCAATTCAATTAGGACTGGGAGA
TCAAACCCTGCCATGCTTGATAAGATTGAGGTGGAGTATTACGGCAGTCCAGTTAGCCTGAAGAGCATTGCTCAAATTAGTACACCTGATGCAAGCTCACTTTTG
GTCCAGCCATATGATAAATCCAGCTTAAAGTCAATAGAGAAGGCCATAGTCAACTCTGACTTGGGATTGACTCCAAACAATGATGGAGAAGTCATACGGTTGACT
CTCCCTCAACTCACATCCGAAAGAAGAAAGGAGTTGTCAAAAGTTGTTGCAAAGCAGGCAGAGGAAGGGAAGGAGAAAAAACTTTCGGAAGATAATGTCAAGGAC
TTGTCAAGCGATTTGCAGAAACTGACTGATGACTATATGAAGAAGATTGATGCCATACACAAGCAGAAAGAGAAGGTATGGTCCATCTCGACTGATTTAATTAAA
GCACTCAAGACTTTAATCCATTCCACTGATTTAATTATGAATCCGGACACACAAGTATCGGTAGGATTTGATTTTGGATCTTCATTTCACGAATATTTGCAAGAT
CACTCACTGAACCTATTTTATTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MKVRVEAIARVNKKARMEKTIDTVRSSFNSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVNSDLGLTPNNDGEVIRLT
LPQLTSERRKELSKVVAKQAEEGKEKKLSEDNVKDLSSDLQKLTDDYMKKIDAIHKQKEKVWSISTDLIKALKTLIHSTDLIMNPDTQVSVGFDFGSSFHEYLQD
HSLNLFY

HG10011953 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome