; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10011963 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10011963
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCST complex subunit STN1
Genome locationChr01:15813028..15813594
RNA-Seq ExpressionHG10011963
SyntenyHG10011963
Gene Ontology termsGO:0006468 - protein phosphorylation (biological process)
GO:0008033 - tRNA processing (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0004674 - protein serine/threonine kinase activity (molecular function)
GO:0004712 - protein serine/threonine/tyrosine kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0106310 - protein serine kinase activity (molecular function)
InterPro domainsIPR004365 - OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR012340 - Nucleic acid-binding, OB-fold
IPR040260 - Replication factor A protein-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571457.1 CST complex subunit STN1, partial [Cucurbita argyrosperma subsp. sororia]4.6e-8182.98Show/hide
Query:  MGQKFNSVRT-RELHIRFPMNQRQRLSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCIL
        MG++FNS RT  EL  RFPMNQ++  SL HTHIKLLGFDLNSLTQ+SS SSSSDAVSFSR+GYAVSC EIVGVVV RD KPN+FL+FSVDDGT CV CIL
Subjt:  MGQKFNSVRT-RELHIRFPMNQRQRLSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCIL

Query:  WLNHLTSPYFASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLSPTP
        WLNHLTSPYFA  HQ DVRI+GNMATHFA+QIRVGIVARVRG++SSYRGVVQITVSDVVVE+DPNAEILHWLD MRLALKCYDLSP P
Subjt:  WLNHLTSPYFASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLSPTP

XP_008449339.1 PREDICTED: CST complex subunit STN1 [Cucumis melo]1.2e-7683.8Show/hide
Query:  ELHIRFPMNQRQR--LSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYF
        +LHIRFPMNQRQR   SL  TH+KLLGFDLNSL QN    SSSD+VSFSRKGYAVSCTEIVGVVV RD KPN+FLKFSVDDGTACVGCILWLNHLTS YF
Subjt:  ELHIRFPMNQRQR--LSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYF

Query:  ASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLSPTPT
        AS H  DVRI+ +MATHFA+QIRVGIV RVRG+LSSYRG+VQITVSDVVVEDDPNAEILHWLDSMRLA+KCYDLSP PT
Subjt:  ASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLSPTPT

XP_022963452.1 LOW QUALITY PROTEIN: CST complex subunit STN1 [Cucurbita moschata]3.1e-7784.66Show/hide
Query:  ELHIRFPMNQRQRLSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFAS
        EL  RFPMNQ++  SL HTHIKLLGFDLNSLTQ++S SSSSDAVSFSR+GYAVSC EIVGVVV RD KPN+FL+FSVDDGT CV CILWLNHLTSPYFAS
Subjt:  ELHIRFPMNQRQRLSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFAS

Query:  CHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLSPTP
         HQ DVRI+GNMATHFA+QIRVGIVARVRGR+SSYRGVVQ+TVSDVVVE+DPNAEILHWLD MRLALKCYDLSP P
Subjt:  CHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLSPTP

XP_038887265.1 CST complex subunit STN1 isoform X1 [Benincasa hispida]7.1e-8288.2Show/hide
Query:  MGQKFNSVRTRELHIRFPMNQRQRLSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILW
        MGQKFNS R R+LHIRFPMNQRQRLSL HTHIKLLGFD+NSL Q SS SSSSDAVSFSR GYAVSC+EIVGVVVS D KPN+FLKFSVDDGTACVGCILW
Subjt:  MGQKFNSVRTRELHIRFPMNQRQRLSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILW

Query:  LNHLTSPYFASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLAL
        LNHLTSPYFAS HQ DVRIMGN+ATHFA+QIRVGIVARVRG+LSSYRGVVQITVSDVVVE+DPNAEILHWLDSMR  L
Subjt:  LNHLTSPYFASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLAL

XP_038887266.1 CST complex subunit STN1 isoform X2 [Benincasa hispida]7.8e-8189.08Show/hide
Query:  MGQKFNSVRTRELHIRFPMNQRQRLSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILW
        MGQKFNS R R+LHIRFPMNQRQRLSL HTHIKLLGFD+NSL Q SS SSSSDAVSFSR GYAVSC+EIVGVVVS D KPN+FLKFSVDDGTACVGCILW
Subjt:  MGQKFNSVRTRELHIRFPMNQRQRLSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILW

Query:  LNHLTSPYFASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSM
        LNHLTSPYFAS HQ DVRIMGN+ATHFA+QIRVGIVARVRG+LSSYRGVVQITVSDVVVE+DPNAEILHWLDSM
Subjt:  LNHLTSPYFASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSM

TrEMBL top hitse value%identityAlignment
A0A0A0LNV0 OB domain-containing protein1.4e-7283.14Show/hide
Query:  MNQRQR--LSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFASCHQAD
        MNQR+R   SL  TH+KLL FDLNSL Q    +SSSD+VSFSRKGYAVSCTEIVGVVV RD KPN+FLKFSVDDGTACVGCILWLNHLTS YFAS H  D
Subjt:  MNQRQR--LSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFASCHQAD

Query:  VRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLSPTPT
        VRI+G+MATHFA+QIRVGIV RVRG+LSSYRG+VQITVSDVVVEDDPNAEILHWLDSMRLA+KCYDLSPTPT
Subjt:  VRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLSPTPT

A0A1S3BLT5 CST complex subunit STN15.7e-7783.8Show/hide
Query:  ELHIRFPMNQRQR--LSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYF
        +LHIRFPMNQRQR   SL  TH+KLLGFDLNSL QN    SSSD+VSFSRKGYAVSCTEIVGVVV RD KPN+FLKFSVDDGTACVGCILWLNHLTS YF
Subjt:  ELHIRFPMNQRQR--LSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYF

Query:  ASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLSPTPT
        AS H  DVRI+ +MATHFA+QIRVGIV RVRG+LSSYRG+VQITVSDVVVEDDPNAEILHWLDSMRLA+KCYDLSP PT
Subjt:  ASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLSPTPT

A0A5D3E3H2 CST complex subunit STN16.5e-7383.72Show/hide
Query:  MNQRQR--LSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFASCHQAD
        MNQRQR   SL  TH+KLLGFDLNSL QN    SSSD+VSFSRKGYAVSCTEIVGVVV RD KPN+FLKFSVDDGTACVGCILWLNHLTS YFAS H  D
Subjt:  MNQRQR--LSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFASCHQAD

Query:  VRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLSPTPT
        VRI+ +MATHFA+QIRVGIV RVRG+LSSYRG+VQITVSDVVVEDDPNAEILHWLDSMRLA+KCYDLSP PT
Subjt:  VRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLSPTPT

A0A6J1HFA9 LOW QUALITY PROTEIN: CST complex subunit STN11.5e-7784.66Show/hide
Query:  ELHIRFPMNQRQRLSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFAS
        EL  RFPMNQ++  SL HTHIKLLGFDLNSLTQ++S SSSSDAVSFSR+GYAVSC EIVGVVV RD KPN+FL+FSVDDGT CV CILWLNHLTSPYFAS
Subjt:  ELHIRFPMNQRQRLSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFAS

Query:  CHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLSPTP
         HQ DVRI+GNMATHFA+QIRVGIVARVRGR+SSYRGVVQ+TVSDVVVE+DPNAEILHWLD MRLALKCYDLSP P
Subjt:  CHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLSPTP

A0A6J1HUX0 CST complex subunit STN16.5e-7382.76Show/hide
Query:  MGQKFNSVRTRELHIRFPMNQRQRLSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILW
        MGQ  NS RT E   RFPMNQ++  SL HTHIKLLGFDLNSLTQ+SS SSSSDAVSFSR+G+AVSC EIVGVVVSRD KPN+FL+FSVDDGT CV CILW
Subjt:  MGQKFNSVRTRELHIRFPMNQRQRLSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILW

Query:  LNHLTSPYFASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSM
        LNHLTSPYFAS HQ DVRI+GNMATHFA+QIRVGIVARVRG++SSYRGVVQITVSDVVVE+DPNAEILHWLD M
Subjt:  LNHLTSPYFASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSM

SwissProt top hitse value%identityAlignment
Q9LMK5 CST complex subunit STN13.2e-3752.56Show/hide
Query:  SLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFASCHQADVRIMGNMAT
        SL  TH KL+  D+  LTQ+ + S+S   +     G  VS  EIVG +VSRD  P KFLKF VDDGT CV C++WLN LTS YF+    A + ++ + A 
Subjt:  SLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFASCHQADVRIMGNMAT

Query:  HFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCY
          A+QIR+G VARVRGR+ SYRGV+QIT +  V E DPNAEILHWL+ ++L   CY
Subjt:  HFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCY

Arabidopsis top hitse value%identityAlignment
AT1G07130.1 Nucleic acid-binding, OB-fold-like protein2.3e-3852.56Show/hide
Query:  SLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFASCHQADVRIMGNMAT
        SL  TH KL+  D+  LTQ+ + S+S   +     G  VS  EIVG +VSRD  P KFLKF VDDGT CV C++WLN LTS YF+    A + ++ + A 
Subjt:  SLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFASCHQADVRIMGNMAT

Query:  HFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCY
          A+QIR+G VARVRGR+ SYRGV+QIT +  V E DPNAEILHWL+ ++L   CY
Subjt:  HFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCY

AT2G24490.1 replicon protein A21.7e-0424Show/hide
Query:  FSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYR
        F SS +       G +++   +VG+V  +D      ++F++DDGT  + C  W++             D R M          +R G   R+ G L +++
Subjt:  FSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYR

Query:  GVVQITVSDVVVEDDPNAEILHWLD
        G  Q+ V  V    D N    H+++
Subjt:  GVVQITVSDVVVEDDPNAEILHWLD

AT2G24490.2 replicon protein A21.7e-0424Show/hide
Query:  FSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYR
        F SS +       G +++   +VG+V  +D      ++F++DDGT  + C  W++             D R M          +R G   R+ G L +++
Subjt:  FSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFASCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYR

Query:  GVVQITVSDVVVEDDPNAEILHWLD
        G  Q+ V  V    D N    H+++
Subjt:  GVVQITVSDVVVEDDPNAEILHWLD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCCAGAAATTTAACTCAGTCAGAACCAGAGAATTACACATTAGGTTTCCGATGAACCAACGGCAACGCCTCTCCCTCAACCACACCCACATCAAGCTTCTTGGTTT
CGACCTTAATTCCCTCACCCAAAATTCCTCTTTTTCTTCTTCTTCTGATGCAGTTTCTTTCTCTCGGAAAGGCTATGCCGTTTCCTGTACAGAGATCGTCGGCGTTGTGG
TCTCTCGTGACCGCAAACCTAACAAGTTTCTCAAATTTTCCGTCGACGATGGTACCGCCTGTGTCGGTTGCATCCTGTGGCTAAATCATCTCACATCGCCTTATTTTGCT
TCCTGCCATCAGGCAGATGTTCGAATAATGGGAAATATGGCGACCCATTTCGCATCCCAAATTAGGGTTGGGATTGTTGCTAGGGTTCGGGGGAGATTGAGCAGCTATAG
GGGAGTGGTGCAGATTACAGTGTCAGATGTTGTGGTTGAGGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCTATGAGGTTGGCTCTAAAGTGTTATGACCTCT
CCCCTACACCCACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGCCAGAAATTTAACTCAGTCAGAACCAGAGAATTACACATTAGGTTTCCGATGAACCAACGGCAACGCCTCTCCCTCAACCACACCCACATCAAGCTTCTTGGTTT
CGACCTTAATTCCCTCACCCAAAATTCCTCTTTTTCTTCTTCTTCTGATGCAGTTTCTTTCTCTCGGAAAGGCTATGCCGTTTCCTGTACAGAGATCGTCGGCGTTGTGG
TCTCTCGTGACCGCAAACCTAACAAGTTTCTCAAATTTTCCGTCGACGATGGTACCGCCTGTGTCGGTTGCATCCTGTGGCTAAATCATCTCACATCGCCTTATTTTGCT
TCCTGCCATCAGGCAGATGTTCGAATAATGGGAAATATGGCGACCCATTTCGCATCCCAAATTAGGGTTGGGATTGTTGCTAGGGTTCGGGGGAGATTGAGCAGCTATAG
GGGAGTGGTGCAGATTACAGTGTCAGATGTTGTGGTTGAGGACGACCCAAATGCTGAAATTCTGCATTGGTTGGATTCTATGAGGTTGGCTCTAAAGTGTTATGACCTCT
CCCCTACACCCACTTAG
Protein sequenceShow/hide protein sequence
MGQKFNSVRTRELHIRFPMNQRQRLSLNHTHIKLLGFDLNSLTQNSSFSSSSDAVSFSRKGYAVSCTEIVGVVVSRDRKPNKFLKFSVDDGTACVGCILWLNHLTSPYFA
SCHQADVRIMGNMATHFASQIRVGIVARVRGRLSSYRGVVQITVSDVVVEDDPNAEILHWLDSMRLALKCYDLSPTPT