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HG10011985 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10011985
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionSignal recognition particle 9 kDa protein
Genome locationChr01:16141047..16142421
RNA-Seq ExpressionHG10011985
SyntenyHG10011985
Gene Ontology termsGO:0006614 - SRP-dependent cotranslational protein targeting to membrane (biological process)
GO:0045900 - negative regulation of translational elongation (biological process)
GO:0005786 - signal recognition particle, endoplasmic reticulum targeting (cellular component)
GO:0008312 - 7S RNA binding (molecular function)
InterPro domainsIPR008832 - Signal recognition particle, SRP9 subunit
IPR009018 - Signal recognition particle, SRP9/SRP14 subunit
IPR039432 - SRP9 domain
IPR039914 - Signal recognition particle SRP9


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022146059.1 signal recognition particle 9 kDa protein isoform X1 [Momordica charantia]6.7e-3798.72Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPD
        MVYI SWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPD
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPD

XP_022146062.1 signal recognition particle 9 kDa protein isoform X2 [Momordica charantia]3.0e-3796.3Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDGIL
        MVYI SWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPD +L
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDGIL

XP_022963515.1 signal recognition particle 9 kDa protein [Cucurbita moschata]3.0e-3798.72Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPD
        MVYIASWDEFVERSVQLFRSDPNSTRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPD
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPD

XP_023554094.1 signal recognition particle 9 kDa protein-like [Cucurbita pepo subsp. pepo]3.0e-3798.72Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPD
        MVYIASWDEFVERSVQLFRSDPNSTRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPD
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPD

XP_038887366.1 signal recognition particle 9 kDa protein [Benincasa hispida]6.7e-3797.44Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPD
        MVY+ASWDEFVERSVQLFRSDPNSTRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPD
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPD

TrEMBL top hitse value%identityAlignment
A0A6J1CY87 Signal recognition particle 9 kDa protein3.3e-3798.72Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPD
        MVYI SWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPD
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPD

A0A6J1CYJ0 Signal recognition particle 9 kDa protein1.5e-3796.3Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDGIL
        MVYI SWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPD +L
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDGIL

A0A6J1EY60 Signal recognition particle 9 kDa protein4.3e-3798.72Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPD
        MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFF LMARGPD
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPD

A0A6J1HI87 Signal recognition particle 9 kDa protein1.5e-3798.72Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPD
        MVYIASWDEFVERSVQLFRSDPNSTRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPD
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPD

A0A6J1K1A1 Signal recognition particle 9 kDa protein4.3e-3798.72Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPD
        MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFF LMARGPD
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPD

SwissProt top hitse value%identityAlignment
O04438 Signal recognition particle 9 kDa protein1.1e-3485.9Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPD
        MVY+ SW+EFVERSVQLFR DPN+TRY +KYRHC+GKLVLKVTD+RECLKFKTDQAQDAKKMEKLNNIFF LM RGPD
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPD

P21262 Signal recognition particle 9 kDa protein1.6e-1245.21Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLM
        M    +W+EF   + +L+ +DP   R  +KYRH DG L +KVTD+  CL ++TDQAQD KK+EK ++    LM
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLM

P49458 Signal recognition particle 9 kDa protein1.6e-1248.53Show/hide
Query:  SWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLM
        +W+EF   + +L+ +DP   R  +KYRH DG L +KVTD+  CL +KTDQAQD KK+EK ++    LM
Subjt:  SWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLM

Q55GL2 Signal recognition particle 9 kDa protein4.0e-1649.3Show/hide
Query:  VYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTL
        +YI  WDEF ++S QL+R+DP  TR++ K+RH +GK+VLKVT++   LKF+TD+  D K+++++N++FF L
Subjt:  VYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTL

Q9SMU7 Signal recognition particle 9 kDa protein1.2e-3691.03Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPD
        MVYIASWDEFV+RSVQLFR+DP STRY +KYRHCDGKLVLKVTDN+ECLKFKTDQAQ+AKKMEKLNNIFFTLMARGPD
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPD

Arabidopsis top hitse value%identityAlignment
AT3G49100.1 Signal recognition particle, SRP9/SRP14 subunit8.5e-3891.03Show/hide
Query:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPD
        MVYIASWDEFV+RSVQLFR+DP STRY +KYRHCDGKLVLKVTDN+ECLKFKTDQAQ+AKKMEKLNNIFFTLMARGPD
Subjt:  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCTACATAGCTTCGTGGGATGAATTCGTCGAGCGTTCTGTGCAATTGTTCCGTTCCGATCCCAACTCCACGAGGTATAACATAAAGTATCGACACTGCGATGGGAA
GCTGGTTCTTAAGGTCACCGATAACCGTGAGTGTCTTAAGTTCAAGACTGACCAGGCACAGGATGCCAAAAAGATGGAAAAACTCAACAACATATTCTTCACTCTGATGG
CCCGGGGCCCTGATGGTATTTTGCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCTACATAGCTTCGTGGGATGAATTCGTCGAGCGTTCTGTGCAATTGTTCCGTTCCGATCCCAACTCCACGAGGTATAACATAAAGTATCGACACTGCGATGGGAA
GCTGGTTCTTAAGGTCACCGATAACCGTGAGTGTCTTAAGTTCAAGACTGACCAGGCACAGGATGCCAAAAAGATGGAAAAACTCAACAACATATTCTTCACTCTGATGG
CCCGGGGCCCTGATGGTATTTTGCTTTGA
Protein sequenceShow/hide protein sequence
MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDGILL