; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10012019 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10012019
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationChr01:16642271..16642672
RNA-Seq ExpressionHG10012019
SyntenyHG10012019
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571513.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]9.2e-6090.48Show/hide
Query:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD
        MEFEPNSIIWGALLNGCKLHGN EIAKDAVQQL ILEP NSGHYNLLVSMYAEEK WM+V HIRAMMKE GVEKKYPGSSWIELEGRIHQFSASA+ HPD
Subjt:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD

Query:  SDEIYFILTELDGQLKLAGYILEPSV
        SD+IYFILTELDGQLKLAG +LEPSV
Subjt:  SDEIYFILTELDGQLKLAGYILEPSV

XP_008447444.1 PREDICTED: pentatricopeptide repeat-containing protein At1g06145-like [Cucumis melo]8.9e-6392.91Show/hide
Query:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD
        MEFEPNSIIWGALLNGCKLHGN  IAKDAV+QLMILEPMNSGHYNLLVSM AEEKDWMEV HIR MMKEQGVEKKYPGSSWIELEG IHQFSASADSHPD
Subjt:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD

Query:  SDEIYFILTELDGQLKLAGYILEPSVC
        SD+IYF+LTELDGQLKLAGYILEPSVC
Subjt:  SDEIYFILTELDGQLKLAGYILEPSVC

XP_011651448.1 pentatricopeptide repeat-containing protein At1g06143 [Cucumis sativus]1.0e-6392.91Show/hide
Query:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD
        MEFEPNSIIWGALLNGCKLHGN EIA+DAV+QLMILEPMNSGHYNLLVSMYAEEKDWMEV HIR+MMKE+GVEKKYPGSSWIELEG IHQFSASADSHPD
Subjt:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD

Query:  SDEIYFILTELDGQLKLAGYILEPSVC
        SD+IYF+LTELDGQLKLAGYILEPSVC
Subjt:  SDEIYFILTELDGQLKLAGYILEPSVC

XP_023554768.1 pentatricopeptide repeat-containing protein At1g06143 [Cucurbita pepo subsp. pepo]2.4e-6091.27Show/hide
Query:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD
        MEFEPNSIIWGALLNGCKLHGN EIAKDAV+QL ILEP NSGHYNLLVSMYAEEK WMEV HIRAMMKE GVEKKYPGSSWIELEGRIHQFSASAD HPD
Subjt:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD

Query:  SDEIYFILTELDGQLKLAGYILEPSV
        SD+IYFILTELDGQLKLAG +LEPSV
Subjt:  SDEIYFILTELDGQLKLAGYILEPSV

XP_038888390.1 pentatricopeptide repeat-containing protein At1g06143 [Benincasa hispida]7.8e-6795.35Show/hide
Query:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD
        MEFEPNSIIWGALLNGCKLHGN EIAKDAVQQLMILEPM+SGHYNLLVSMYAEEKDWMEV HIRAMMKEQGVEKKYPGSSWIEL+GRIHQFSASADSHPD
Subjt:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD

Query:  SDEIYFILTELDGQLKLAGYILEPSVCCN
        SDEIYF+LTELDGQLKLAGYILEP VCCN
Subjt:  SDEIYFILTELDGQLKLAGYILEPSVCCN

TrEMBL top hitse value%identityAlignment
A0A0A0LB99 Uncharacterized protein5.1e-6492.91Show/hide
Query:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD
        MEFEPNSIIWGALLNGCKLHGN EIA+DAV+QLMILEPMNSGHYNLLVSMYAEEKDWMEV HIR+MMKE+GVEKKYPGSSWIELEG IHQFSASADSHPD
Subjt:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD

Query:  SDEIYFILTELDGQLKLAGYILEPSVC
        SD+IYF+LTELDGQLKLAGYILEPSVC
Subjt:  SDEIYFILTELDGQLKLAGYILEPSVC

A0A1S3BHH1 pentatricopeptide repeat-containing protein At1g06145-like4.3e-6392.91Show/hide
Query:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD
        MEFEPNSIIWGALLNGCKLHGN  IAKDAV+QLMILEPMNSGHYNLLVSM AEEKDWMEV HIR MMKEQGVEKKYPGSSWIELEG IHQFSASADSHPD
Subjt:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD

Query:  SDEIYFILTELDGQLKLAGYILEPSVC
        SD+IYF+LTELDGQLKLAGYILEPSVC
Subjt:  SDEIYFILTELDGQLKLAGYILEPSVC

A0A5A7T9J0 Pentatricopeptide repeat-containing protein4.3e-6392.91Show/hide
Query:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD
        MEFEPNSIIWGALLNGCKLHGN  IAKDAV+QLMILEPMNSGHYNLLVSM AEEKDWMEV HIR MMKEQGVEKKYPGSSWIELEG IHQFSASADSHPD
Subjt:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD

Query:  SDEIYFILTELDGQLKLAGYILEPSVC
        SD+IYF+LTELDGQLKLAGYILEPSVC
Subjt:  SDEIYFILTELDGQLKLAGYILEPSVC

A0A6J1HIB3 pentatricopeptide repeat-containing protein At1g061435.8e-6089.68Show/hide
Query:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD
        MEFEPNSIIWGALLNGCKLHGN EIAKDAVQQL +LEP NSGHYNLLVSMYAEEK WM+V HIRAMMKE GVEKKYPGSSWIELEGRIHQFSASA+ HPD
Subjt:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD

Query:  SDEIYFILTELDGQLKLAGYILEPSV
        SD+IYFILTELDGQLKLAG +LEPSV
Subjt:  SDEIYFILTELDGQLKLAGYILEPSV

A0A6J1HUY6 pentatricopeptide repeat-containing protein At1g061431.3e-5989.68Show/hide
Query:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD
        MEFEPNSIIWGALLNGCKLHGN EIAKDAV++L ILEP NSGHYNLLVSMYAEEK W+EV HIRAMMKE GVEKKYPGSSWIELEGRIHQFSASAD HPD
Subjt:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD

Query:  SDEIYFILTELDGQLKLAGYILEPSV
        SD+IYFILTELDGQLKLAG +LEPSV
Subjt:  SDEIYFILTELDGQLKLAGYILEPSV

SwissProt top hitse value%identityAlignment
A8MQA3 Pentatricopeptide repeat-containing protein At4g210656.5e-2444.63Show/hide
Query:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD
        M  +PN +IW  LL  C +HG+ ++A+ A  Q++ LEP +SG Y LL +MYA E+ W +V  IR  M   GV KK PG S +E+  R+H+F     SHP 
Subjt:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD

Query:  SDEIYFILTELDGQLKLAGYI
        SD IY  L E+ G+L+  GY+
Subjt:  SDEIYFILTELDGQLKLAGYI

Q56X05 Pentatricopeptide repeat-containing protein At1g061431.5e-3354.47Show/hide
Query:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD
        MEFEPN++IWGALL+GC++H N  IA+ A  +LM+LEPMNSG+Y LLVSMYAE+  W +V  IR  M+E G+EK  PG+S I ++ R H F+A+  SH  
Subjt:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD

Query:  SDEIYFILTELDGQLKLAGYILE
        SDE+  +L E+  Q+ LAGY+ E
Subjt:  SDEIYFILTELDGQLKLAGYILE

Q9SR82 Putative pentatricopeptide repeat-containing protein At3g088203.1e-2643.8Show/hide
Query:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD
        M   PN+I+WGALL+GC+L  + ++A+  +++L+ LEP N+G+Y  L ++Y+    W E   +R MM ++G+ KK PG SWIELEG++H+F A   SHP 
Subjt:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD

Query:  SDEIYFILTELDGQLKLAGYI
        SD+IY  L +L  +++L G++
Subjt:  SDEIYFILTELDGQLKLAGYI

Q9STE1 Pentatricopeptide repeat-containing protein At4g213003.1e-2644.35Show/hide
Query:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD
        M F P++ +WG LL  C+LH N E+A+ A  +LM L+P NSG+Y L+ + +A  ++W  V  +R++MKE+ V+ K PG SWIE+  R H F +   +HP+
Subjt:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD

Query:  SDEIYFILTELDGQLKLAGYILEP
        S  IY +L  L G+L+L GYI +P
Subjt:  SDEIYFILTELDGQLKLAGYILEP

Q9SY02 Pentatricopeptide repeat-containing protein At4g027503.0e-2946.03Show/hide
Query:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD
        M FEP++ IWG LL   ++HGN E+A+ A  ++  +EP NSG Y LL ++YA    W +VG +R  M+++GV KK PG SWIE++ + H FS   + HP+
Subjt:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD

Query:  SDEIYFILTELDGQLKLAGYILEPSV
         DEI+  L ELD ++K AGY+ + SV
Subjt:  SDEIYFILTELDGQLKLAGYILEPSV

Arabidopsis top hitse value%identityAlignment
AT1G06150.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.1e-3454.47Show/hide
Query:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD
        MEFEPN++IWGALL+GC++H N  IA+ A  +LM+LEPMNSG+Y LLVSMYAE+  W +V  IR  M+E G+EK  PG+S I ++ R H F+A+  SH  
Subjt:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD

Query:  SDEIYFILTELDGQLKLAGYILE
        SDE+  +L E+  Q+ LAGY+ E
Subjt:  SDEIYFILTELDGQLKLAGYILE

AT3G08820.1 Pentatricopeptide repeat (PPR) superfamily protein2.2e-2743.8Show/hide
Query:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD
        M   PN+I+WGALL+GC+L  + ++A+  +++L+ LEP N+G+Y  L ++Y+    W E   +R MM ++G+ KK PG SWIELEG++H+F A   SHP 
Subjt:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD

Query:  SDEIYFILTELDGQLKLAGYI
        SD+IY  L +L  +++L G++
Subjt:  SDEIYFILTELDGQLKLAGYI

AT4G02750.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.1e-3046.03Show/hide
Query:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD
        M FEP++ IWG LL   ++HGN E+A+ A  ++  +EP NSG Y LL ++YA    W +VG +R  M+++GV KK PG SWIE++ + H FS   + HP+
Subjt:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD

Query:  SDEIYFILTELDGQLKLAGYILEPSV
         DEI+  L ELD ++K AGY+ + SV
Subjt:  SDEIYFILTELDGQLKLAGYILEPSV

AT4G21065.1 Tetratricopeptide repeat (TPR)-like superfamily protein4.6e-2544.63Show/hide
Query:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD
        M  +PN +IW  LL  C +HG+ ++A+ A  Q++ LEP +SG Y LL +MYA E+ W +V  IR  M   GV KK PG S +E+  R+H+F     SHP 
Subjt:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD

Query:  SDEIYFILTELDGQLKLAGYI
        SD IY  L E+ G+L+  GY+
Subjt:  SDEIYFILTELDGQLKLAGYI

AT4G21300.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.2e-2744.35Show/hide
Query:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD
        M F P++ +WG LL  C+LH N E+A+ A  +LM L+P NSG+Y L+ + +A  ++W  V  +R++MKE+ V+ K PG SWIE+  R H F +   +HP+
Subjt:  MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPD

Query:  SDEIYFILTELDGQLKLAGYILEP
        S  IY +L  L G+L+L GYI +P
Subjt:  SDEIYFILTELDGQLKLAGYILEP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTTGAACCAAACTCTATCATTTGGGGAGCCTTGTTGAATGGTTGCAAGCTTCATGGGAACCCTGAGATTGCTAAAGATGCTGTTCAACAGTTGATGATTTTGGA
GCCCATGAATAGTGGGCATTACAATCTTTTGGTTAGCATGTATGCTGAAGAAAAGGACTGGATGGAGGTTGGCCATATCCGAGCAATGATGAAAGAACAAGGAGTAGAAA
AGAAATATCCTGGGTCAAGTTGGATCGAATTGGAAGGGAGAATTCATCAGTTTTCAGCTTCAGCTGATTCTCACCCTGATTCTGACGAAATATACTTTATACTGACAGAA
TTAGATGGACAGCTGAAGCTAGCTGGTTACATACTCGAGCCTTCAGTATGCTGTAACTTTGGTTTGCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAATTTGAACCAAACTCTATCATTTGGGGAGCCTTGTTGAATGGTTGCAAGCTTCATGGGAACCCTGAGATTGCTAAAGATGCTGTTCAACAGTTGATGATTTTGGA
GCCCATGAATAGTGGGCATTACAATCTTTTGGTTAGCATGTATGCTGAAGAAAAGGACTGGATGGAGGTTGGCCATATCCGAGCAATGATGAAAGAACAAGGAGTAGAAA
AGAAATATCCTGGGTCAAGTTGGATCGAATTGGAAGGGAGAATTCATCAGTTTTCAGCTTCAGCTGATTCTCACCCTGATTCTGACGAAATATACTTTATACTGACAGAA
TTAGATGGACAGCTGAAGCTAGCTGGTTACATACTCGAGCCTTCAGTATGCTGTAACTTTGGTTTGCTCTGA
Protein sequenceShow/hide protein sequence
MEFEPNSIIWGALLNGCKLHGNPEIAKDAVQQLMILEPMNSGHYNLLVSMYAEEKDWMEVGHIRAMMKEQGVEKKYPGSSWIELEGRIHQFSASADSHPDSDEIYFILTE
LDGQLKLAGYILEPSVCCNFGLL