CuGenDBv2

Gene ID	HG10012085
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	protein LOW PSII ACCUMULATION 1, chloroplastic
Genome location	Chr01:17335999..17339870
RNA-Seq Expression	HG10012085
Synteny	HG10012085
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR021883 - Protein LOW PSII ACCUMULATION 1-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7011306.1 Protein LOW PSII ACCUMULATION 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.5e-163

78.54

Show/hide

Query:  AANSGYRGGIETIPRNLLPLTNCETTSRVNAQFLESLTMVVSLSMPNISSCNNIARP-------LHNTPDFRSCRRFRCHVHRKAASFNSSPSLPDSLRF
        AANSGYRG IET  RNLLPL   ETT  +N Q+LE   MVVS+++  I SCNN  RP        HN  + + CRR  CHVHR   SFN  PS+ DSLR+
Subjt:  AANSGYRGGIETIPRNLLPLTNCETTSRVNAQFLESLTMVVSLSMPNISSCNNIARP-------LHNTPDFRSCRRFRCHVHRKAASFNSSPSLPDSLRF

Query:  LHYARRNLANFTCSAADKPEI--------------------SSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKG
        L Y  R+LA+ TCSA+DKPEI                    SSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDIL G
Subjt:  LHYARRNLANFTCSAADKPEI--------------------SSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKG

Query:  LGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTL
        LGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVI ISTLRGIARLVICAGPESFIMEAFK+SEPFTERLLERGVLV+P ATD S+L
Subjt:  LGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTL

Query:  KFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
         FEFDEREE+KDITTKRKRLWRLTPVYM++WSAWLD+QKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  KFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

XP_004152010.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus]

2.0e-160

88.17

Show/hide

Query:  MVVSLSMPNISSCNNIA-------RPLHNTPDFRSCRRFRCHVHRKAASFNSSPSLPDSLRFLHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSV
        M VSL  P+ISS NNIA        P HN  DF+  RR  C VHRK  SF+SSP LP SLRFL Y RRNLANF CSAADKPEISSTAKIRSEVLSPFRSV
Subjt:  MVVSLSMPNISSCNNIA-------RPLHNTPDFRSCRRFRCHVHRKAASFNSSPSLPDSLRFLHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSV

Query:  RMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR
        RMFFYLTFIASGTLGGLIATTQLL ALANSSRA+EVPDIL+GLG+DFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPIS LRGIAR
Subjt:  RMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR

Query:  LVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
        LVICAGPESFI+EAFKSSEPFTERLLERGVLVVPLATDV+TL FEFD+REEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGV+SDSPVYLSLRMDG
Subjt:  LVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG

Query:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

XP_022963501.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata]

1.4e-169

83.24

Show/hide

Query:  AANSGYRGGIETIPRNLLPLTNCETTSRVNAQFLESLTMVVSLSMPNISSCNNIARP-------LHNTPDFRSCRRFRCHVHRKAASFNSSPSLPDSLRF
        AANSGYRG IET  RNLLPL   ETT  +N Q+LE   MVVS+++  I SCNN  RP        HN  + + CRR  CHVHR   SFN  PS+ DSLR+
Subjt:  AANSGYRGGIETIPRNLLPLTNCETTSRVNAQFLESLTMVVSLSMPNISSCNNIARP-------LHNTPDFRSCRRFRCHVHRKAASFNSSPSLPDSLRF

Query:  LHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENN
        L Y RRNLA+ TCSA+DKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDIL GLGIDFGAVALFAFLYFRENN
Subjt:  LHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENN

Query:  AKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRL
        AKNAQLARLSREESLSNLKLRVDQNKVI ISTLRGIARLVICAGPESFIMEAFK+SEPFTERLLERGVLV+P ATD S+L FEFDEREE+KDITTKRKRL
Subjt:  AKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRL

Query:  WRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        WRLTPVYM++WSAWLD+QKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  WRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

XP_023554665.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita pepo subsp. pepo]

1.2e-168

82.71

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Query:  AANSGYRGGIETIPRNLLPLTNCETTSRVNAQFLESLTMVVSLSMPNISSCNNIARP-------LHNTPDFRSCRRFRCHVHRKAASFNSSPSLPDSLRF
        AANSGYRG IET  RNLLPL   ETT  +N ++LE   MVVS+++  I SCNN  RP        HN  + + CRR  CHVHR   SFN  PS+ DSLR+
Subjt:  AANSGYRGGIETIPRNLLPLTNCETTSRVNAQFLESLTMVVSLSMPNISSCNNIARP-------LHNTPDFRSCRRFRCHVHRKAASFNSSPSLPDSLRF

Query:  LHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENN
        L Y RRNLA+ TCSA+DKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDIL GLGIDFGAVA FAFLYFRENN
Subjt:  LHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENN

Query:  AKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRL
        AKNAQLARLSREESLSNLKLRVDQNKVI ISTLRGIARLVICAGPESFIMEAFK+SEPFTERLLERGVLV+P ATD S+L FEFDEREE+KDITTKRKRL
Subjt:  AKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRL

Query:  WRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        WRLTPVYM++WSAWLD+QKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  WRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

XP_038888898.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida]

2.7e-170

93.99

Show/hide

Query:  MVVSLSMPNISSCNNIARPLH--NTPDFRSCRRFRCHVHRKAASFNSSPSLPDSLRFLHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFY
        M VSLS PNISSCNNI RP H   T DF+  RR  CHVHRK  SFNSSP+LPDSL  LHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFY
Subjt:  MVVSLSMPNISSCNNIARPLH--NTPDFRSCRRFRCHVHRKAASFNSSPSLPDSLRFLHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFY

Query:  LTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICA
        LTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICA
Subjt:  LTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICA

Query:  GPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGS
        GPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTL FEFDEREEVKD+TTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGS
Subjt:  GPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGS

Query:  GVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        GVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  GVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L902 Uncharacterized protein

9.5e-161

88.17

Show/hide

Query:  MVVSLSMPNISSCNNIA-------RPLHNTPDFRSCRRFRCHVHRKAASFNSSPSLPDSLRFLHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSV
        M VSL  P+ISS NNIA        P HN  DF+  RR  C VHRK  SF+SSP LP SLRFL Y RRNLANF CSAADKPEISSTAKIRSEVLSPFRSV
Subjt:  MVVSLSMPNISSCNNIA-------RPLHNTPDFRSCRRFRCHVHRKAASFNSSPSLPDSLRFLHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSV

Query:  RMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR
        RMFFYLTFIASGTLGGLIATTQLL ALANSSRA+EVPDIL+GLG+DFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPIS LRGIAR
Subjt:  RMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR

Query:  LVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
        LVICAGPESFI+EAFKSSEPFTERLLERGVLVVPLATDV+TL FEFD+REEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGV+SDSPVYLSLRMDG
Subjt:  LVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG

Query:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

A0A1S3BHU5 protein LOW PSII ACCUMULATION 1, chloroplastic

1.1e-159

87.87

Show/hide

Query:  MVVSLSMPNISSCNNIA-------RPLHNTPDFRSCRRFRCHVHRKAASFNSSPSLPDSLRFLHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSV
        M VSLS   +SS NNIA        P HN PDF+ CRR   HVHRK  SF+SSP LP SLRF  Y RRNLAN+  SAADKPEISSTAKIRSEVLSPFRSV
Subjt:  MVVSLSMPNISSCNNIA-------RPLHNTPDFRSCRRFRCHVHRKAASFNSSPSLPDSLRFLHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSV

Query:  RMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR
        RMFFYLTFIASGTLGGLIATTQLL ALANSSRA+EVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR
Subjt:  RMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR

Query:  LVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
        LVICAGPESF++EAFKSSEPFTE+LLERGVLVVPLATDV+TL FEFDEREEVKDIT+KRK+LWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
Subjt:  LVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG

Query:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

A0A5D3BG35 Protein LOW PSII ACCUMULATION 1

1.1e-159

87.87

Show/hide

Query:  MVVSLSMPNISSCNNIA-------RPLHNTPDFRSCRRFRCHVHRKAASFNSSPSLPDSLRFLHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSV
        M VSLS   +SS NNIA        P HN PDF+ CRR   HVHRK  SF+SSP LP SLRF  Y RRNLAN+  SAADKPEISSTAKIRSEVLSPFRSV
Subjt:  MVVSLSMPNISSCNNIA-------RPLHNTPDFRSCRRFRCHVHRKAASFNSSPSLPDSLRFLHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSV

Query:  RMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR
        RMFFYLTFIASGTLGGLIATTQLL ALANSSRA+EVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR
Subjt:  RMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR

Query:  LVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
        LVICAGPESF++EAFKSSEPFTE+LLERGVLVVPLATDV+TL FEFDEREEVKDIT+KRK+LWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
Subjt:  LVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG

Query:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

A0A6J1HGA1 protein LOW PSII ACCUMULATION 1, chloroplastic

6.6e-170

83.24

Show/hide

Query:  AANSGYRGGIETIPRNLLPLTNCETTSRVNAQFLESLTMVVSLSMPNISSCNNIARP-------LHNTPDFRSCRRFRCHVHRKAASFNSSPSLPDSLRF
        AANSGYRG IET  RNLLPL   ETT  +N Q+LE   MVVS+++  I SCNN  RP        HN  + + CRR  CHVHR   SFN  PS+ DSLR+
Subjt:  AANSGYRGGIETIPRNLLPLTNCETTSRVNAQFLESLTMVVSLSMPNISSCNNIARP-------LHNTPDFRSCRRFRCHVHRKAASFNSSPSLPDSLRF

Query:  LHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENN
        L Y RRNLA+ TCSA+DKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDIL GLGIDFGAVALFAFLYFRENN
Subjt:  LHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENN

Query:  AKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRL
        AKNAQLARLSREESLSNLKLRVDQNKVI ISTLRGIARLVICAGPESFIMEAFK+SEPFTERLLERGVLV+P ATD S+L FEFDEREE+KDITTKRKRL
Subjt:  AKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRL

Query:  WRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        WRLTPVYM++WSAWLD+QKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  WRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

A0A6J1HWD0 protein LOW PSII ACCUMULATION 1, chloroplastic

9.2e-156

84.62

Show/hide

Query:  MVVSLSMPNISSCNNIARP-------LHNTPDFRSCRRFRCHVHRKAASFNSSPSLPDSLRFLHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSV
        MVVS+++  I SCNN  RP        HN  + + CRR  CHVHR   SFN  PS+ DSLR+L Y RRNLA+ TCSA+DKPEISSTAKIRSEVLSPFRSV
Subjt:  MVVSLSMPNISSCNNIARP-------LHNTPDFRSCRRFRCHVHRKAASFNSSPSLPDSLRFLHYARRNLANFTCSAADKPEISSTAKIRSEVLSPFRSV

Query:  RMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR
        RMFFYLTFIASGTLGGLIATTQLLAALAN+SRAEEVPDIL GLGIDFGAVA FAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVI ISTLRGIAR
Subjt:  RMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR

Query:  LVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
        LVICAGPES IMEAFK+SEPFTERLLERGVLV+P ATD S+L FEFDEREE+KDITTKRKRLWRLTPVYM++WSAWLD+QKKLAGVSSDSPVYLSLRMDG
Subjt:  LVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG

Query:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

SwissProt top hits

e value

%identity

Alignment

Q9SRY4 Protein LOW PSII ACCUMULATION 1, chloroplastic

2.6e-30

30.94

Show/hide

Query:  KIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQN
        K+ SEV +PFR VR FFY  F A+  +       +L+ A+     A  + +      I+ G + +   L+  EN  +  Q+ +++R+E+LS L LR+  N
Subjt:  KIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQN

Query:  KVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPL---------------------ATDVSTLKFEFDEREE--VKDITTKRKRLWR
        +V+ +  LR   R VI AG +  +  A + ++ F   LL RGVL+VP+                     AT + ++  +FD R +  V     K +  ++
Subjt:  KVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPL---------------------ATDVSTLKFEFDEREE--VKDITTKRKRLWR

Query:  LTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGL
           V   EW  W+ +Q+   GV+    VY+ LR+DGRVR SG G P W  +  +LPP+  + S L
Subjt:  LTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGL

Arabidopsis top hits

e value

%identity

Alignment

AT1G02910.1 tetratricopeptide repeat (TPR)-containing protein

1.8e-31

30.94

Show/hide

Query:  KIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQN
        K+ SEV +PFR VR FFY  F A+  +       +L+ A+     A  + +      I+ G + +   L+  EN  +  Q+ +++R+E+LS L LR+  N
Subjt:  KIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQN

Query:  KVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPL---------------------ATDVSTLKFEFDEREE--VKDITTKRKRLWR
        +V+ +  LR   R VI AG +  +  A + ++ F   LL RGVL+VP+                     AT + ++  +FD R +  V     K +  ++
Subjt:  KVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPL---------------------ATDVSTLKFEFDEREE--VKDITTKRKRLWR

Query:  LTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGL
           V   EW  W+ +Q+   GV+    VY+ LR+DGRVR SG G P W  +  +LPP+  + S L
Subjt:  LTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGL

AT4G28740.1 FUNCTIONS IN: molecular_function unknown

1.3e-101

57.51

Show/hide

Query:  TSRVNAQFLESLTMVVSLSMPNISSCNNIARPLHNTPDFRSCRRFRCHVHRKAASFNSSPSLPDSLRFLHYARRNLANFTCSAADKP-EISSTAKIRSEV
        T  V       +  +VS S   I  C+   + L+   +  S RR   H HR+   F+        L      +    N  C AAD+P EIS+ A+IRSEV
Subjt:  TSRVNAQFLESLTMVVSLSMPNISSCNNIARPLHNTPDFRSCRRFRCHVHRKAASFNSSPSLPDSLRFLHYARRNLANFTCSAADKP-EISSTAKIRSEV

Query:  LSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQ-NKVIPI
        LSPFRSVRMFFYL FIASG+LGGLIAT++L+ ALAN +R+ EV +I+KGLG+D GA +LFAFLYF EN  KNAQ+ARLSREE+L  LK+RV++ NKVI +
Subjt:  LSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQ-NKVIPI

Query:  STLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLKFEFDEREEV-KDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSP
          LRG+ARLVICAGP  FI EAFK S+ +T+ L+ERGV+VV  ATD ++   EFDE +   ++++ +RK+LWR+TPV++ EW  WL+EQKKLA VSSDSP
Subjt:  STLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLKFEFDEREEV-KDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSP

Query:  VYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRV
        VYLSLR+DGRVR SGVGYPPW A VAQLPPVKG+W+GLLDGMDGRV
Subjt:  VYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRV

Sequences

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CDS sequence

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ATGGTGGCGGCAAATTCTGGGTATCGTGGCGGCATCGAGACCATCCCTCGAAATTTGCTTCCATTGACAAACTGTGAAACTACCTCACGTGTCAATGCTCAGTTTCTCGA
GTCGTTAACCATGGTGGTTTCCCTTTCCATGCCCAACATTTCCTCCTGCAACAACATTGCTCGTCCTCTTCATAACACTCCTGATTTCAGATCCTGCCGCCGTTTCCGCT
GCCATGTTCATCGGAAGGCGGCCTCCTTTAATTCTAGCCCTAGTCTACCAGATTCGCTTCGTTTTCTTCATTACGCCAGACGAAATTTAGCTAACTTCACTTGCTCGGCT
GCTGATAAACCGGAAATCAGTTCCACGGCCAAGATAAGAAGTGAAGTTCTTTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATTGCAAGTGGTACATT
GGGAGGATTGATAGCAACCACTCAATTGCTTGCTGCATTGGCAAACTCATCAAGAGCTGAAGAAGTCCCTGATATTCTGAAAGGACTTGGAATAGACTTCGGAGCCGTAG
CCCTTTTTGCATTTCTTTATTTCAGAGAGAACAATGCAAAAAATGCTCAGTTGGCTAGACTGTCAAGAGAAGAAAGCCTTTCCAATTTAAAGCTTCGAGTGGACCAAAAC
AAAGTTATTCCCATCAGCACTTTGCGTGGGATTGCTCGTCTGGTAATTTGTGCTGGCCCTGAATCCTTTATCATGGAAGCTTTTAAATCAAGTGAACCTTTCACTGAACG
ACTTCTAGAACGGGGTGTTTTAGTCGTACCCCTTGCCACAGATGTCAGTACACTGAAGTTTGAGTTTGATGAACGTGAAGAGGTGAAGGATATAACCACCAAAAGGAAAA
GACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCAGCGTGGTTAGATGAACAGAAGAAGTTGGCTGGAGTCTCCTCCGACTCTCCAGTGTATCTATCTCTGCGA
ATGGATGGCCGTGTTCGTGGTAGCGGTGTTGGCTATCCTCCATGGAATGCTCTTGTAGCACAATTACCACCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGA
CGGGAGAGTTCTTTGA

mRNA sequence

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Protein sequence

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MVAANSGYRGGIETIPRNLLPLTNCETTSRVNAQFLESLTMVVSLSMPNISSCNNIARPLHNTPDFRSCRRFRCHVHRKAASFNSSPSLPDSLRFLHYARRNLANFTCSA
ADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQN
KVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLR
MDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

HG10012085 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome