; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

HG10012090 (gene) of Bottle gourd (Hangzhou Gourd) v1 genome

Gene IDHG10012090
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionTranscription factor PIF1-like isoform X1
Genome locationChr01:17402293..17410011
RNA-Seq ExpressionHG10012090
SyntenyHG10012090
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR031066 - Basic helix-loop-helix (bHLH) transcription factors ALC-like, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037888.1 transcription factor PIF1-like isoform X1 [Cucumis melo var. makuwa]5.3e-6780.23Show/hide
Query:  MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPMFPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGM
        MSMGCGMVPMM+PGVQQFMPPMGMGLGMGMGIGME GVNRPMMPYPNMLAGPMFPR AGA QLGP+FSFPPFHMAHV N DPSRIQETNQ DQMHSSSGM
Subjt:  MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPMFPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGM

Query:  QNINQPRASSSLDGYQQFLGSRQMQVRAASSQSSPQ--NQLALPPVTHNQHTSQRLENIDNPESGSPTMDPS
        QNIN PRASSS D Y QF GS+QMQ+ AASSQ SPQ  + +   P T N     RLENIDN E+GSPTMDPS
Subjt:  QNINQPRASSSLDGYQQFLGSRQMQVRAASSQSSPQ--NQLALPPVTHNQHTSQRLENIDNPESGSPTMDPS

XP_011651631.1 transcription factor PIF1 [Cucumis sativus]3.8e-6581.4Show/hide
Query:  MSMGCGMVPMMFPGVQQFMPP--MGMGLGMGMGIGMETGVNRPMMPYPNMLAGPMFPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSS
        MSMGCGMVPMMFPG QQFMPP  MGMGLGMG+GIGME GVNRPMMPYPNMLAG MFP QAGA QLGP+ SFPPFHMAHV NTDPSRIQETNQ DQMHSSS
Subjt:  MSMGCGMVPMMFPGVQQFMPP--MGMGLGMGMGIGMETGVNRPMMPYPNMLAGPMFPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSS

Query:  GMQNINQPRASSSLDGYQQFLGSRQMQVRAASSQSSPQNQ-LALPPVTHNQHTSQRLENIDNPESGSPTMDP
         MQNIN PRASSSLD Y QF GS+QMQ  A+SSQ S QNQ  AL P THNQHT +RLENIDN E+GSPTM P
Subjt:  GMQNINQPRASSSLDGYQQFLGSRQMQVRAASSQSSPQNQ-LALPPVTHNQHTSQRLENIDNPESGSPTMDP

XP_022159238.1 transcription factor PIF1-like isoform X1 [Momordica charantia]1.8e-6277.78Show/hide
Query:  MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPMFPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGM
        MSMGCGM+PMMFPG+QQF+PPMGMGLGMGM  GMET  NRPMMPYPNMLAG  FPRQAGAAQLGPTF F  FHMAH+ + DPSRIQ TNQ D MHSS GM
Subjt:  MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPMFPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGM

Query:  QNINQPRASSSLDGYQQFLGSRQMQVRAASSQSSPQNQLALPPVTHNQHTSQR--LENIDNPESGSPTMDP
        QNINQ R SSSLDGYQQFLGS+QMQV AA SQ SPQNQ A PP THNQHT+ R  LENI+N +SG+ TMDP
Subjt:  QNINQPRASSSLDGYQQFLGSRQMQVRAASSQSSPQNQLALPPVTHNQHTSQR--LENIDNPESGSPTMDP

XP_022159249.1 transcription factor PIF1-like isoform X2 [Momordica charantia]1.8e-6277.78Show/hide
Query:  MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPMFPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGM
        MSMGCGM+PMMFPG+QQF+PPMGMGLGMGM  GMET  NRPMMPYPNMLAG  FPRQAGAAQLGPTF F  FHMAH+ + DPSRIQ TNQ D MHSS GM
Subjt:  MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPMFPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGM

Query:  QNINQPRASSSLDGYQQFLGSRQMQVRAASSQSSPQNQLALPPVTHNQHTSQR--LENIDNPESGSPTMDP
        QNINQ R SSSLDGYQQFLGS+QMQV AA SQ SPQNQ A PP THNQHT+ R  LENI+N +SG+ TMDP
Subjt:  QNINQPRASSSLDGYQQFLGSRQMQVRAASSQSSPQNQLALPPVTHNQHTSQR--LENIDNPESGSPTMDP

XP_038887610.1 transcription factor PIF1-like [Benincasa hispida]4.9e-7386.47Show/hide
Query:  MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPMFPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGM
        MSMGCGM+PMMFPGVQQFMPPMGMGLGMGMG GMETGVNR MMPYPNMLAGPMFPRQAGA QLGPTF FPPFHMAHVPNTDPSRIQETNQ DQMHSSSGM
Subjt:  MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPMFPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGM

Query:  QNINQPRASSSLDGYQQFLGSRQMQVRAASSQSSPQNQLALP-PVTHNQHTSQRLENIDNPESGSPTMDP
        QNIN PRASSSLDGY  FLGS+QMQV AASS  SPQNQ   P P  HNQHTS+RLENIDN ESG  TMDP
Subjt:  QNINQPRASSSLDGYQQFLGSRQMQVRAASSQSSPQNQLALP-PVTHNQHTSQRLENIDNPESGSPTMDP

TrEMBL top hitse value%identityAlignment
A0A0A0LE09 BHLH domain-containing protein1.8e-6581.4Show/hide
Query:  MSMGCGMVPMMFPGVQQFMPP--MGMGLGMGMGIGMETGVNRPMMPYPNMLAGPMFPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSS
        MSMGCGMVPMMFPG QQFMPP  MGMGLGMG+GIGME GVNRPMMPYPNMLAG MFP QAGA QLGP+ SFPPFHMAHV NTDPSRIQETNQ DQMHSSS
Subjt:  MSMGCGMVPMMFPGVQQFMPP--MGMGLGMGMGIGMETGVNRPMMPYPNMLAGPMFPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSS

Query:  GMQNINQPRASSSLDGYQQFLGSRQMQVRAASSQSSPQNQ-LALPPVTHNQHTSQRLENIDNPESGSPTMDP
         MQNIN PRASSSLD Y QF GS+QMQ  A+SSQ S QNQ  AL P THNQHT +RLENIDN E+GSPTM P
Subjt:  GMQNINQPRASSSLDGYQQFLGSRQMQVRAASSQSSPQNQ-LALPPVTHNQHTSQRLENIDNPESGSPTMDP

A0A5D3BE16 Transcription factor PIF1-like isoform X12.6e-6780.23Show/hide
Query:  MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPMFPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGM
        MSMGCGMVPMM+PGVQQFMPPMGMGLGMGMGIGME GVNRPMMPYPNMLAGPMFPR AGA QLGP+FSFPPFHMAHV N DPSRIQETNQ DQMHSSSGM
Subjt:  MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPMFPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGM

Query:  QNINQPRASSSLDGYQQFLGSRQMQVRAASSQSSPQ--NQLALPPVTHNQHTSQRLENIDNPESGSPTMDPS
        QNIN PRASSS D Y QF GS+QMQ+ AASSQ SPQ  + +   P T N     RLENIDN E+GSPTMDPS
Subjt:  QNINQPRASSSLDGYQQFLGSRQMQVRAASSQSSPQ--NQLALPPVTHNQHTSQRLENIDNPESGSPTMDPS

A0A6J1DY63 transcription factor PIF1-like isoform X38.5e-6377.78Show/hide
Query:  MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPMFPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGM
        MSMGCGM+PMMFPG+QQF+PPMGMGLGMGM  GMET  NRPMMPYPNMLAG  FPRQAGAAQLGPTF F  FHMAH+ + DPSRIQ TNQ D MHSS GM
Subjt:  MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPMFPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGM

Query:  QNINQPRASSSLDGYQQFLGSRQMQVRAASSQSSPQNQLALPPVTHNQHTSQR--LENIDNPESGSPTMDP
        QNINQ R SSSLDGYQQFLGS+QMQV AA SQ SPQNQ A PP THNQHT+ R  LENI+N +SG+ TMDP
Subjt:  QNINQPRASSSLDGYQQFLGSRQMQVRAASSQSSPQNQLALPPVTHNQHTSQR--LENIDNPESGSPTMDP

A0A6J1DY96 transcription factor PIF1-like isoform X18.5e-6377.78Show/hide
Query:  MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPMFPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGM
        MSMGCGM+PMMFPG+QQF+PPMGMGLGMGM  GMET  NRPMMPYPNMLAG  FPRQAGAAQLGPTF F  FHMAH+ + DPSRIQ TNQ D MHSS GM
Subjt:  MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPMFPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGM

Query:  QNINQPRASSSLDGYQQFLGSRQMQVRAASSQSSPQNQLALPPVTHNQHTSQR--LENIDNPESGSPTMDP
        QNINQ R SSSLDGYQQFLGS+QMQV AA SQ SPQNQ A PP THNQHT+ R  LENI+N +SG+ TMDP
Subjt:  QNINQPRASSSLDGYQQFLGSRQMQVRAASSQSSPQNQLALPPVTHNQHTSQR--LENIDNPESGSPTMDP

A0A6J1E1W0 transcription factor PIF1-like isoform X28.5e-6377.78Show/hide
Query:  MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPMFPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGM
        MSMGCGM+PMMFPG+QQF+PPMGMGLGMGM  GMET  NRPMMPYPNMLAG  FPRQAGAAQLGPTF F  FHMAH+ + DPSRIQ TNQ D MHSS GM
Subjt:  MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPMFPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGM

Query:  QNINQPRASSSLDGYQQFLGSRQMQVRAASSQSSPQNQLALPPVTHNQHTSQR--LENIDNPESGSPTMDP
        QNINQ R SSSLDGYQQFLGS+QMQV AA SQ SPQNQ A PP THNQHT+ R  LENI+N +SG+ TMDP
Subjt:  QNINQPRASSSLDGYQQFLGSRQMQVRAASSQSSPQNQLALPPVTHNQHTSQR--LENIDNPESGSPTMDP

SwissProt top hitse value%identityAlignment
Q8GT73 Transcription factor bHLH1195.4e-0636.62Show/hide
Query:  MSMGCGMV-PMMFPG-VQQFMPPMGMGLGMGMGIGMETGVNR--PMMPYPNMLAGPMFPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHS
        MSMG GM+ PMM  G  QQFMP M MG+          G+NR  P +P+P    G  FPR    A +GP++   P      P+T  S +   + P  +HS
Subjt:  MSMGCGMV-PMMFPG-VQQFMPPMGMGLGMGMGIGMETGVNR--PMMPYPNMLAGPMFPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHS

Query:  SSGMQNINQPRASSSLDGYQQFLGSRQMQVRAASSQSSPQNQ
        +      NQPR  + ++ Y QF+G  QMQ      Q  P +Q
Subjt:  SSGMQNINQPRASSSLDGYQQFLGSRQMQVRAASSQSSPQNQ

Q8GZM7 Transcription factor PIF19.5e-1139.24Show/hide
Query:  MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPM-FPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSG
        MSMGCGM+PMM+PG+QQ+MP M MG+GM   I   +      MP+PNMLA     P Q   A  GP +   P H      +DPSR+   NQ  Q   +SG
Subjt:  MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPM-FPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSG

Query:  MQNINQPR-ASSSLDGYQQFLGSR-----QMQVRAASSQSSPQNQLALPPVTHNQHTS
             QP+  +   D YQQF G       Q Q +A S  SS +   +     H  HT+
Subjt:  MQNINQPR-ASSSLDGYQQFLGSR-----QMQVRAASSQSSPQNQLALPPVTHNQHTS

Arabidopsis top hitse value%identityAlignment
AT2G20180.1 phytochrome interacting factor 3-like 56.8e-1239.24Show/hide
Query:  MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPM-FPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSG
        MSMGCGM+PMM+PG+QQ+MP M MG+GM   I   +      MP+PNMLA     P Q   A  GP +   P H      +DPSR+   NQ  Q   +SG
Subjt:  MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPM-FPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSG

Query:  MQNINQPR-ASSSLDGYQQFLGSR-----QMQVRAASSQSSPQNQLALPPVTHNQHTS
             QP+  +   D YQQF G       Q Q +A S  SS +   +     H  HT+
Subjt:  MQNINQPR-ASSSLDGYQQFLGSR-----QMQVRAASSQSSPQNQLALPPVTHNQHTS

AT2G20180.2 phytochrome interacting factor 3-like 56.8e-1239.24Show/hide
Query:  MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPM-FPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSG
        MSMGCGM+PMM+PG+QQ+MP M MG+GM   I   +      MP+PNMLA     P Q   A  GP +   P H      +DPSR+   NQ  Q   +SG
Subjt:  MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPM-FPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSG

Query:  MQNINQPR-ASSSLDGYQQFLGSR-----QMQVRAASSQSSPQNQLALPPVTHNQHTS
             QP+  +   D YQQF G       Q Q +A S  SS +   +     H  HT+
Subjt:  MQNINQPR-ASSSLDGYQQFLGSR-----QMQVRAASSQSSPQNQLALPPVTHNQHTS

AT2G20180.3 phytochrome interacting factor 3-like 56.8e-1239.24Show/hide
Query:  MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPM-FPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSG
        MSMGCGM+PMM+PG+QQ+MP M MG+GM   I   +      MP+PNMLA     P Q   A  GP +   P H      +DPSR+   NQ  Q   +SG
Subjt:  MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPM-FPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSG

Query:  MQNINQPR-ASSSLDGYQQFLGSR-----QMQVRAASSQSSPQNQLALPPVTHNQHTS
             QP+  +   D YQQF G       Q Q +A S  SS +   +     H  HT+
Subjt:  MQNINQPR-ASSSLDGYQQFLGSR-----QMQVRAASSQSSPQNQLALPPVTHNQHTS

AT4G28811.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein3.8e-0736.62Show/hide
Query:  MSMGCGMV-PMMFPG-VQQFMPPMGMGLGMGMGIGMETGVNR--PMMPYPNMLAGPMFPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHS
        MSMG GM+ PMM  G  QQFMP M MG+          G+NR  P +P+P    G  FPR    A +GP++   P      P+T  S +   + P  +HS
Subjt:  MSMGCGMV-PMMFPG-VQQFMPPMGMGLGMGMGIGMETGVNR--PMMPYPNMLAGPMFPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHS

Query:  SSGMQNINQPRASSSLDGYQQFLGSRQMQVRAASSQSSPQNQ
        +      NQPR  + ++ Y QF+G  QMQ      Q  P +Q
Subjt:  SSGMQNINQPRASSSLDGYQQFLGSRQMQVRAASSQSSPQNQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCATGGGATGTGGTATGGTGCCTATGATGTTTCCTGGTGTACAACAATTTATGCCTCCAATGGGAATGGGACTTGGAATGGGCATGGGCATTGGCATGGAAACAGG
CGTGAATCGTCCCATGATGCCGTATCCTAACATGTTAGCTGGACCGATGTTTCCGAGGCAAGCTGGAGCCGCTCAACTTGGACCAACTTTCTCTTTTCCACCCTTTCATA
TGGCACATGTTCCGAATACCGATCCATCAAGAATTCAAGAAACAAATCAGCCGGATCAAATGCACAGCTCATCAGGAATGCAAAATATAAATCAGCCAAGGGCCTCAAGT
TCACTTGATGGCTATCAGCAGTTTCTTGGTTCCCGACAGATGCAGGTGAGAGCAGCATCATCACAGTCTTCCCCACAGAATCAACTAGCCCTCCCACCAGTAACCCACAA
TCAACATACTAGTCAGAGACTCGAAAATATCGACAATCCCGAATCAGGAAGTCCTACCATGGATCCATCTGCTCCTAATGAAGCACTTGTAGATAGGCCAATATGTGTTG
GAGACCAGAATGAAGTACTTGAAAAGTTGCAGCTAGAGGCTATTGGTATTAATTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCCATGGGATGTGGTATGGTGCCTATGATGTTTCCTGGTGTACAACAATTTATGCCTCCAATGGGAATGGGACTTGGAATGGGCATGGGCATTGGCATGGAAACAGG
CGTGAATCGTCCCATGATGCCGTATCCTAACATGTTAGCTGGACCGATGTTTCCGAGGCAAGCTGGAGCCGCTCAACTTGGACCAACTTTCTCTTTTCCACCCTTTCATA
TGGCACATGTTCCGAATACCGATCCATCAAGAATTCAAGAAACAAATCAGCCGGATCAAATGCACAGCTCATCAGGAATGCAAAATATAAATCAGCCAAGGGCCTCAAGT
TCACTTGATGGCTATCAGCAGTTTCTTGGTTCCCGACAGATGCAGGTGAGAGCAGCATCATCACAGTCTTCCCCACAGAATCAACTAGCCCTCCCACCAGTAACCCACAA
TCAACATACTAGTCAGAGACTCGAAAATATCGACAATCCCGAATCAGGAAGTCCTACCATGGATCCATCTGCTCCTAATGAAGCACTTGTAGATAGGCCAATATGTGTTG
GAGACCAGAATGAAGTACTTGAAAAGTTGCAGCTAGAGGCTATTGGTATTAATTCATAA
Protein sequenceShow/hide protein sequence
MSMGCGMVPMMFPGVQQFMPPMGMGLGMGMGIGMETGVNRPMMPYPNMLAGPMFPRQAGAAQLGPTFSFPPFHMAHVPNTDPSRIQETNQPDQMHSSSGMQNINQPRASS
SLDGYQQFLGSRQMQVRAASSQSSPQNQLALPPVTHNQHTSQRLENIDNPESGSPTMDPSAPNEALVDRPICVGDQNEVLEKLQLEAIGINS